Research Output 1976 2020

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Review article
2020

Microbiome Composition in Pediatric Populations from Birth to Adolescence: Impact of Diet and Prebiotic and Probiotic Interventions

Davis, E. C., Dinsmoor, A. M., Wang, M. & Donovan, S. M., Jan 1 2020, (Accepted/In press) In : Digestive Diseases and Sciences.

Research output: Contribution to journalReview article

Prebiotics
Microbiota
Probiotics
Parturition
Pediatrics
2019

A small-molecule competitive inhibitor of phosphatidic acid binding by the AAA+ protein NSF/Sec18 blocks the SNARE-priming stage of vacuole fusion

Sparks, R. P., Arango, A. S., Starr, M. L., Aboff, Z. L., Hurst, L. R., Rivera-Kohr, D. A., Zhang, C., Harnden, K. A., Jenkins, J. L., Guida, W. C., Tajkhorshid, E. & Fratti, R. A., Jan 1 2019, In : Journal of Biological Chemistry. 294, 46, p. 17168-17185 18 p.

Research output: Contribution to journalReview article

Open Access
N-Ethylmaleimide-Sensitive Proteins
SNARE Proteins
Phosphatidic Acids
Vacuoles
Carrier Proteins

Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation

Muller, M. P., Jiang, T., Sun, C., Lihan, M., Pant, S., Mahinthichaichan, P., Trifan, A. & Tajkhorshid, E., May 8 2019, In : Chemical reviews. 119, 9, p. 6086-6161 76 p.

Research output: Contribution to journalReview article

Membrane Proteins
Modulation
Lipids
Proteins
Molecular dynamics

Computational Dissection of Membrane Transport at a Microscopic Level

Jiang, T., Wen, P. C., Trebesch, N., Zhao, Z., Pant, S., Kapoor, K., Shekhar, M. & Tajkhorshid, E., Jan 1 2019, (Accepted/In press) In : Trends in Biochemical Sciences.

Research output: Contribution to journalReview article

Dissection
Membrane Transport Proteins
Membranes
Molecular Dynamics Simulation
Computational methods

Effectiveness of Workplace Lactation Interventions on Breastfeeding Outcomes in the United States: An Updated Systematic Review

Kim, J. H., Shin, J. C. & Donovan, S. M., Feb 1 2019, In : Journal of Human Lactation. 35, 1, p. 100-113 14 p.

Research output: Contribution to journalReview article

Breast Feeding
Lactation
Workplace
Breast
Parental Leave

Exercise and the Gut Microbiome: A Review of the Evidence, Potential Mechanisms, and Implications for Human Health

Mailing, L. J., Allen, J. M., Buford, T. W., Fields, C. J. & Woods, J. A., Apr 1 2019, In : Exercise and Sport Sciences Reviews. 47, 2, p. 75-85 11 p.

Research output: Contribution to journalReview article

Health
Gastrointestinal Tract
Exercise
Gastrointestinal Microbiome

Health benefits of yogurt among infants and toddlers aged 4 to 24 months: A systematic review

Donovan, S. M. & Rao, G., Jan 1 2019, In : Nutrition reviews. 77, 7, p. 478-486 9 p.

Research output: Contribution to journalReview article

Yogurt
Insurance Benefits
Cohort Studies
Cultured Milk Products
Information Storage and Retrieval
Psychoneuroimmunology
Inflammasomes
Rodentia
Brain
Overnutrition

Preface

Donovan, S. M., German, J. B., Lönnerdal, B. & Lucas, A., Jan 1 2019, In : Nestle Nutrition Institute Workshop Series. 90, p. VII-IX

Research output: Contribution to journalReview article

Open Access

Translating human cancer sequences into personalized porcine cancer models

Xu, C., Wu, S., Schook, L. B. & Schachtschneider, K. M., Jan 1 2019, In : Frontiers in Oncology. 9, FEB, 00105.

Research output: Contribution to journalReview article

Open Access
Swine
Neoplasms
Precision Medicine
Mutation
Technology

Visual hallucinations, thalamocortical physiology and Lewy body disease: A review

Esmaeeli, S., Murphy, K., Swords, G. M., Ibrahim, B. A., Brown, J. W. & Llano, D. A., Aug 2019, In : Neuroscience and Biobehavioral Reviews. 103, p. 337-351 15 p.

Research output: Contribution to journalReview article

Lewy Body Disease
Hallucinations
Thalamic Nuclei
Thalamus
Arousal
2018

Auditory system dysfunction in Alzheimer disease and its prodromal states: A review

Swords, G. M., Nguyen, L. T., Mudar, R. & Llano, D. A., Jul 2018, In : Ageing Research Reviews. 44, p. 49-59 11 p.

Research output: Contribution to journalReview article

Prodromal Symptoms
Alzheimer Disease
Central Auditory Diseases
Quality of Life
Pure-Tone Audiometry

Diverse evolutionary origins and mechanisms of lens regeneration

Henry, J. J. & Hamilton, P. W., Jan 1 2018, In : Molecular biology and evolution. 35, 7, p. 1563-1575 13 p.

Research output: Contribution to journalReview article

Lens
Lenses
Regeneration
regeneration
vertebrate

Editorial: Building strategies for porcine cancer models

Collares, T., Seixas, F. K., Rund, L. A. & Schook, L. B., Oct 2 2018, In : Frontiers in Genetics. 9, OCT, 377.

Research output: Contribution to journalReview article

Swine
Neoplasms

Microscopic view of lipids and their diverse biological functions

Wen, P. C., Mahinthichaichan, P., Trebesch, N., Jiang, T., Zhao, Z., Shinn, E., Wang, Y., Shekhar, M., Kapoor, K., Chan, C. K. & Tajkhorshid, E., Aug 2018, In : Current Opinion in Structural Biology. 51, p. 177-186 10 p.

Research output: Contribution to journalReview article

Lipids
Membranes
Physiological Phenomena
Lipid Bilayers
Hydrodynamics

Narrative review of culinary interventions with children in schools to promote healthy eating: Directions for future research and practice

Muzaffar, H., Metcalfe, J. J. & Fiese, B., Jun 1 2018, In : Current Developments in Nutrition. 2, 6, nzy016.

Research output: Contribution to journalReview article

Open Access
school children
healthy diet
Cooking
cooking
body mass index

Of Mice, Dogs, Pigs, and Men: Choosing the Appropriate Model for Immuno-Oncology Research

Overgaard, N. H., Fan, T. M., Schachtschneider, K. M., Principe, D. R., Schook, L. B. & Jungersen, G., Dec 31 2018, In : ILAR Journal. 59, 3, p. 247-262 16 p.

Research output: Contribution to journalReview article

Oncology
Tumors
Swine
Dogs
swine

P-TEFb: Finding its ways to release promoter-proximally paused RNA polymerase II

Li, Y., Liu, M., Chen, L-F. & Chen, R., Mar 15 2018, In : Transcription. 9, 2, p. 88-94 7 p.

Research output: Contribution to journalReview article

Positive Transcriptional Elongation Factor B
RNA Polymerase II
Small Nuclear Ribonucleoproteins
Genetic Promoter Regions
Genes

Reconstitution and substrate specificity for isopentenyl pyrophosphate of the antiviral radical SAM enzyme viperin

Chakravarti, A., Selvadurai, K., Shahoei, R., Lee, H., Fatma, S., Tajkhorshid, E. & Huang, R. H., Jan 1 2018, In : Journal of Biological Chemistry. 293, 36, p. 14122-14133 12 p.

Research output: Contribution to journalReview article

Substrate Specificity
Antiviral Agents
Substrates
Enzymes
Mevalonic Acid

Sensitivity of peripheral membrane proteins to the membrane context: A case study of phosphatidylserine and the TIM proteins

Kerr, D., Tietjen, G. T., Gong, Z., Tajkhorshid, E., Adams, E. J. & Lee, K. Y. C., Oct 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 10, p. 2126-2133 8 p.

Research output: Contribution to journalReview article

T-cells
Phosphatidylserines
Mucins
Immunoglobulins
Membrane Proteins
Food and Beverages
Pediatric Obesity
state law
childhood
food

The American kinesiology association core content for kinesiology programs: From concept to curriculum

Chodzko-Zajko, W., Taylor, E. M. & Reeve, T. G., Nov 1 2018, In : Kinesiology Review. 7, 4, p. 279-285 7 p.

Research output: Contribution to journalReview article

Open Access
Curriculum
Exercise
Quality of Life
Learning
Students
2017

Auditory thalamic circuits and GABAA receptor function: Putative mechanisms in tinnitus pathology

Caspary, D. M. & Llano, D. A., Jun 1 2017, In : Hearing Research. 349, p. 197-207 11 p.

Research output: Contribution to journalReview article

Tinnitus
GABA-A Receptors
Pathology
Geniculate Bodies
Auditory Cortex

Bromodomain and extraterminal proteins - A novel class of therapeutic targets in epigenetics

Chen, J. J., Zhao, X. L., Wang, Z. & Chen, L-F., Jan 1 2017, In : Yaoxue Xuebao. 52, 8, p. 1209-1215 7 p.

Research output: Contribution to journalReview article

Staphylococcal Protein A
Epigenomics
Proteins
Therapeutic Uses
Therapeutics

Clinical translation of handheld optical coherence tomography: Practical considerations and recent advancements

Monroy, G. L., Won, J., Spillman, D. R., Dsouza, R. & Boppart, S. A., Dec 2017, In : Journal of biomedical optics. 22, 12, 121715.

Research output: Contribution to journalReview article

Optical tomography
tomography
form factors
photographic developers
ecosystems

Computational optical coherence tomography [invited]

Liu, Y. Z., South, F. A., Xu, Y., Scott Carney, P. & Boppart, S. A., Mar 1 2017, In : Biomedical Optics Express. 8, 3, p. 1549-1574 26 p.

Research output: Contribution to journalReview article

Optical Coherence Tomography
imaging techniques
tomography
Physics
aberration

Human milk oligosaccharides influence neonatal mucosal and systemic immunity

Donovan, S. M. & Comstock, S. S., Jan 1 2017, In : Annals of Nutrition and Metabolism. 69, 2, p. 42-51 10 p.

Research output: Contribution to journalReview article

Mucosal Immunity
Human Milk
Oligosaccharides
Infant Formula
Milk

Impact of peripheral hearing loss on top-down auditory processing

Lesicko, A. M. H. & Llano, D. A., Jan 1 2017, In : Hearing Research. 343, p. 4-13 10 p.

Research output: Contribution to journalReview article

Hearing Loss
Cues
Auditory Cortex
Cochlear Implants
Cochlea

Intersections of post-transcriptional gene regulatory mechanisms with intermediary metabolism

Arif, W., Datar, G. & Kalsotra, A., Mar 1 2017, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1860, 3, p. 349-362 14 p.

Research output: Contribution to journalReview article

Regulator Genes
Metabolism
Genes
Enzymes
Allosteric Regulation

Mechanisms of Salmonella pathogenesis in animal models

Palmer, A. D. & Slauch, J. M., Nov 17 2017, In : Human and Ecological Risk Assessment. 23, 8, p. 1877-1892 16 p.

Research output: Contribution to journalReview article

Salmonella
Salmonella Infections
Animals
Animal Models
animal

Mitochondrial VDAC1: A key gatekeeper as potential therapeutic target

Camara, A. K. S., Zhou, Y. F., Wen, P. C., Tajkhorshid, E. & Kwok, W. M., Jun 30 2017, In : Frontiers in Physiology. 8, JUN, 460.

Research output: Contribution to journalReview article

Voltage-Dependent Anion Channel 1
Mitochondria
Therapeutics
Apoptosis
Apoptosis Regulatory Proteins

Myotonic dystrophy: disease repeat range, penetrance, age of onset, and relationship between repeat size and phenotypes

Yum, K., Wang, E. T. & Kalsotra, A., Jun 1 2017, In : Current Opinion in Genetics and Development. 44, p. 30-37 8 p.

Research output: Contribution to journalReview article

Myotonic Dystrophy
Penetrance
Genetic Testing
Age of Onset
Myotonia

Review: Capripoxvirus Diseases: Current Status and Opportunities for Control

Tuppurainen, E. S. M., Venter, E. H., Shisler, J. L., Gari, G., Mekonnen, G. A., Juleff, N., Lyons, N. A., De Clercq, K., Upton, C., Bowden, T. R., Babiuk, S. & Babiuk, L. A., Jun 2017, In : Transboundary and Emerging Diseases. 64, 3, p. 729-745 17 p.

Research output: Contribution to journalReview article

Capripoxvirus
Vaccines
vaccines
Lumpy Skin Disease
lumpy skin disease

Review of optical coherence tomography in oncology

Wang, J., Xu, Y. & Boppart, S. A., Dec 2017, In : Journal of biomedical optics. 22, 12, 121711.

Research output: Contribution to journalReview article

Oncology
Optical tomography
tomography
Imaging techniques
Tumors

RNA modifications and structures cooperate to guide RNA-protein interactions

Lewis, C. J. T., Pan, T. & Kalsotra, A., Mar 1 2017, In : Nature Reviews Molecular Cell Biology. 18, 3, p. 202-210 9 p.

Research output: Contribution to journalReview article

Guide RNA
RNA
Proteins
Transcriptome
Gene Expression

The role of early life nutrition in the establishment of gastrointestinal microbial composition and function

Davis, E. C., Wang, M. & Donovan, S. M., Mar 4 2017, In : Gut Microbes. 8, 2, p. 143-171 29 p.

Research output: Contribution to journalReview article

Dysbiosis
Prebiotics
Infant Formula
Microbiota
Probiotics

What Is Driving Obesity? A Review on the Connections Between Obesity and Motorized Transportation

King, D. M. & Jacobson, S. H., Mar 1 2017, In : Current obesity reports. 6, 1, p. 3-9 7 p.

Research output: Contribution to journalReview article

Obesity
Walking
Geographic Information Systems
Automobiles
Leisure Activities
2016
Transcriptome
Lenses
RNA
Polyadenylation
Data handling

Childhood Markers of Health Behavior Relate to Hippocampal Health, Memory, and Academic Performance

Hassevoort, K. M., Khan, N. A., Hillman, C. H. & Cohen, N. J., Sep 1 2016, In : Mind, Brain, and Education. 10, 3, p. 162-170 9 p.

Research output: Contribution to journalReview article

Health Behavior
health behavior
Life Style
brain
childhood

Editorial essay: Introduction to a special issue on work and employment relations in health care

Avgar, A. C., Eaton, A. E., Givan, R. K. & Litwin, A. S., Jan 1 2016, In : Industrial and Labor Relations Review. 69, 4, p. 787-802 16 p.

Research output: Contribution to journalReview article

Health care
Employment relations
Healthcare
Work relations

Exercise and gut immune function: Evidence of alterations in colon immune cell homeostasis and microbiome characteristics with exercise training

Cook, M. D., Allen, J. M., Pence, B. D., Wallig, M. A., Gaskins, H. R., White, B. A. & Woods, J. A., Feb 1 2016, In : Immunology and Cell Biology. 94, 2, p. 158-163 6 p.

Research output: Contribution to journalReview article

Microbiota
Colon
Homeostasis
Dysbiosis
Exercise

Family correlates of childhood binge eating: A systematic review

Saltzman, J. A. & Liechty, J. M., Aug 1 2016, In : Eating Behaviors. 22, p. 62-71 10 p.

Research output: Contribution to journalReview article

Bulimia
Weights and Measures
Binge-Eating Disorder
Education
Thinness

Gut microbiota: Modulation of host physiology in obesity

Nehra, V., Allen, J. M., Mailing, L. J., Kashyap, P. C. & Woods, J. A., Sep 2016, In : Physiology. 31, 5, p. 327-335 9 p.

Research output: Contribution to journalReview article

Microbiota
Obesity
Dysbiosis
Symbiosis
Adiposity

Impact of early gut microbiota on immune and metabolic development and function

Wang, M., Siegel, M. H. & Donovan, S. M., Dec 1 2016, In : Seminars in Fetal and Neonatal Medicine. 21, 6, p. 380-387 8 p.

Research output: Contribution to journalReview article

Prebiotics
Microbiota
Metabolic Diseases
Immune System Diseases
Probiotics

Introduction: New Research on Managing and Resolving Workplace Conflict: Setting the Stage

Lipsky, D. B., Avgar, A. C. & Ryan Lamare, J., Jan 1 2016, In : Advances in Industrial and Labor Relations. 22, p. ix-xxxiii

Research output: Contribution to journalReview article

workplace
Work place

Magnetomotive Optical Coherence Elastography for Magnetic Hyperthermia Dosimetry Based on Dynamic Tissue Biomechanics

Huang, P. C., Pande, P., Ahmad, A., Marjanovic, M., Spillman, D. R., Odintsov, B. & Boppart, S. A., Jul 2016, In : IEEE Journal of Selected Topics in Quantum Electronics. 22, 4, 7355327.

Research output: Contribution to journalReview article

biodynamics
Biomechanics
hyperthermia
Dosimetry
dosimeters

Molluscan models: Crepidula fornicata

Henry, J. Q. & Lyons, D. C., Aug 1 2016, In : Current Opinion in Genetics and Development. 39, p. 138-148 11 p.

Research output: Contribution to journalReview article

Snails
Clustered Regularly Interspaced Short Palindromic Repeats
Introduced Species
Gastrulation
Gastropoda

Nutritional cognitive neuroscience: Innovations for healthy brain aging

Zamroziewicz, M. K. & Barbey, A. K., Jun 6 2016, In : Frontiers in Neuroscience. 10, JUN, 240.

Research output: Contribution to journalReview article

Brain
Food
Health
Epidemiology
Biomarkers

Physical activity, fitness, cognitive function, and academic achievement in children: A systematic review

Donnelly, J. E., Hillman, C. H., Castelli, D., Etnier, J. L., Lee, S., Tomporowski, P., Lambourne, K. & Szabo-Reed, A. N., Jun 1 2016, In : Medicine and Science in Sports and Exercise. 48, 6, p. 1223-1224 2 p.

Research output: Contribution to journalReview article

Physical Fitness
Cognition
Exercise

Physical activity, fitness, cognitive function, and academic achievement in children: A systematic review

Donnelly, J. E., Hillman, C. H., Castelli, D., Etnier, J. L., Lee, S., Tomporowski, P., Lambourne, K. & Szabo-Reed, A. N., Jun 1 2016, In : Medicine and Science in Sports and Exercise. 48, 6, p. 1197-1222 26 p.

Research output: Contribution to journalReview article

Physical Fitness
Cognition
Exercise
Brain
Physical Education and Training