College of Liberal Arts and Sciences

Research Output

2020

A golden time for nanotechnology

Chang, H. H., Gole, M. T. & Murphy, C. J., May 1 2020, In : MRS Bulletin. 45, 5, p. 387-393 7 p.

Research output: Contribution to journalArticle

A guide to LIGO-Virgo detector noise and extraction of transient gravitational-wave signals

LIGO Scientific Collaboration and Virgo Collaboration, Allen, G., Ricker, P. M. & Seidel, E., Feb 6 2020, In : Classical and Quantum Gravity. 37, 5, 055002.

Research output: Contribution to journalArticle

Open Access

A hypoxia-induced Rab pathway regulates embryo implantation by controlled trafficking of secretory granules

Bhurke, A., Kannan, A., Neff, A., Ma, Q., Laws, M. J., Taylor, R. N., Bagchi, M. K. & Bagchi, I. C., Jun 23 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 25, p. 14532-14542 11 p.

Research output: Contribution to journalArticle

AI-optimized detector design for the future Electron-Ion Collider: The dual-radiator RICH case

Cisbani, E., Del Dotto, A., Fanelli, C., Williams, M., Alfred, M., Barbosa, F., Barion, L., Berdnikov, V., Brooks, W., Cao, T., Contalbrigo, M., Danagoulian, S., Datta, A., Demarteau, M., Denisov, A., Diefenthaler, M., Durum, A., Fields, D., Furletova, Y., Gleason, C. & 27 others, Grosse-Perdekamp, M., Hattawy, M., He, X., Van Hecke, H., Higinbotham, D., Horn, T., Hyde, C., Ilieva, Y., Kalicy, G., Kebede, A., Kim, B., Liu, M., McKisson, J., Mendez, R., Nadel-Turonski, P., Pegg, I., Romanov, D., Sarsour, M., Da Silva, C. L., Stevens, J., Sun, X., Syed, S., Towell, R., Xie, J., Zhao, Z. W., Zihlmann, B. & Zorn, C., May 2020, In : Journal of Instrumentation. 15, 5, P05009.

Research output: Contribution to journalArticle

A Joint Fermi-GBM and LIGO/Virgo Analysis of Compact Binary Mergers from the First and Second Gravitational-wave Observing Runs

LIGO Scientific Collaboration and Virgo Collaboration, Allen, G. D., Ricker, P. M. & Seidel, E., Apr 20 2020, In : The Astrophysical journal. 893, 2

Research output: Contribution to journalArticle

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

All-Mode Quantum-Classical Path Integral Simulation of Bacteriochlorophyll Dimer Exciton-Vibration Dynamics

Bose, A. & Makri, N., Jun 18 2020, In : Journal of Physical Chemistry B. 124, 24, p. 5028-5038 11 p.

Research output: Contribution to journalArticle

Alluvial architecture of mid-channel fluvial–tidal barforms: The mesotidal Lower Columbia River, Oregon/Washington, USA

Prokocki, E. W., Best, J. L., Ashworth, P. J., Sambrook Smith, G. H., Nicholas, A. P., Parsons, D. R. & Simpson, C. J., 2020, (Accepted/In press) In : Sedimentology.

Research output: Contribution to journalArticle

Almost Lyapunov functions for nonlinear systems

Liu, S., Liberzon, D. & Zharnitsky, V., Mar 2020, In : Automatica. 113, 108758.

Research output: Contribution to journalArticle

Open Access

A Logistic Factorization Model for Recommender Systems With Multinomial Responses

Wang, Y., Bi, X. & Qu, A., Apr 2 2020, In : Journal of Computational and Graphical Statistics. 29, 2, p. 396-404 9 p.

Research output: Contribution to journalArticle

A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In : Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

Research output: Contribution to journalArticle

A Matrix-Valued Kuramoto Model

Bronski, J. C., Carty, T. E. & Simpson, S. E., Jan 1 2020, In : Journal of Statistical Physics. 178, 2, p. 595-624 30 p.

Research output: Contribution to journalArticle

A Mode-Jumping Algorithm for Bayesian Factor Analysis

Man, A. X. & Culpepper, S. A., 2020, (Accepted/In press) In : Journal of the American Statistical Association.

Research output: Contribution to journalArticle

Amplitude and decay of long-period coda of great earthquakes

Xia, H., Song, X., Weaver, R. & Li, J., Sep 2020, In : Physics of the Earth and Planetary Interiors. 306, 106538.

Research output: Contribution to journalArticle

A Multifunctional Chemical Agent as an Attenuator of Amyloid Burden and Neuroinflammation in Alzheimer’s Disease

Cho, H-J., Sharma, A. K., Zhang, Y., Gross, M. L. & Mirica, L. M., May 20 2020, In : ACS Chemical Neuroscience. 11, 10, p. 1471-1481 11 p.

Research output: Contribution to journalArticle

A multimodal, longitudinal investigation of alcohol's emotional rewards and drinking over time in young adults

Venerable, W. J. & Fairbairn, C. E., Aug 2020, In : Psychology of Addictive Behaviors. 34, 5, p. 601-612 12 p.

Research output: Contribution to journalArticle

An Activity-Based Sensing Approach for the Detection of Cyclooxygenase-2 in Live Cells

Yadav, A. K., Reinhardt, C. J., Arango, A. S., Huff, H. C., Dong, L., Malkowski, M. G., Das, A., Tajkhorshid, E. & Chan, J., Feb 17 2020, In : Angewandte Chemie - International Edition. 59, 8, p. 3307-3314 8 p.

Research output: Contribution to journalArticle

Analysis in metric spaces

Bonk, M., Capogna, L., Hajłasz, P., Shanmugalingam, N. & Tyson, J., Feb 2020, In : Notices of the American Mathematical Society. 67, 2, p. 253-256 4 p.

Research output: Contribution to journalComment/debate

Open Access

Analysis of cicada wing surface constituents by comprehensive multidimensional gas chromatography for species differentiation

Román-Kustas, J., Hoffman, J. B., Alonso, D., Reed, J. H., Gonsalves, A. E., Oh, J., Hong, S., Jo, K. D., Dana, C. E., Alleyne, M., Miljkovic, N. & Cropek, D. M., Nov 2020, In : Microchemical Journal. 158, 105089.

Research output: Contribution to journalArticle

Open Access

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

Analysis of recent interception records reveals frequent transport of arboreal ants and potential predictors for ant invasion in Taiwan

Lee, C. C., Weng, Y. M., Lai, L. C., Suarez, A. V., Wu, W. J., Lin, C. C. & Yang, C. C. S., Jun 2020, In : Insects. 11, 6, p. 1-13 13 p., 356.

Research output: Contribution to journalArticle

Open Access

An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity

Athukoralage, J. S., McMahon, S. A., Zhang, C., Grüschow, S., Graham, S., Krupovic, M., Whitaker, R. J., Gloster, T. M. & White, M. F., Jan 23 2020, In : Nature. 577, 7791, p. 572-575 4 p.

Research output: Contribution to journalArticle

An Asymmetric Iron-Based Redox-Active System for Electrochemical Separation of Ions in Aqueous Media

Tan, K. J., Su, X. & Hatton, T. A., Apr 2020, In : Advanced Functional Materials. 30, 15, 1910363.

Research output: Contribution to journalArticle

An automated aquatic rack system for rearing marine invertebrates

Henry, J. Q., Lesoway, M. P. & Perry, K. J., May 4 2020, In : BMC biology. 18, 1, 46.

Research output: Contribution to journalArticle

Open Access

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., Kandel, A. W. & 16 others, Lázničková-Galetová, M., Napierala, H., Uerpmann, H. P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K. H., Malhi, R. S., Willerslev, E., Hansen, A. J., Dobney, K., Gilbert, M. T. P., Krause, J., Larson, G., Eriksson, A. & Manica, A., May 1 2020, In : Molecular ecology. 29, 9, p. 1596-1610 15 p.

Research output: Contribution to journalArticle

Open Access

An evolutionary path to altered cofactor specificity in a metalloenzyme

Barwinska-Sendra, A., Garcia, Y. M., Sendra, K. M., Baslé, A., Mackenzie, E. S., Tarrant, E., Card, P., Tabares, L. C., Bicep, C., Un, S., Kehl-Fie, T. E. & Waldron, K. J., Dec 1 2020, In : Nature communications. 11, 1, 2738.

Research output: Contribution to journalArticle

Open Access

A new application of Crapper’s exact solution to waves in constant vorticity flows

Hur, V. M. & Vanden-Broeck, J-M., Sep 1 2020, In : European Journal of Mechanics, B/Fluids. 83, p. 190-194 5 p.

Research output: Contribution to journalArticle

A new approach towards the synthesis of bielschowskysin: Synthesis and photochemistry of an advanced macrocyclic enedione intermediate

Nesic, M., Kincanon, M. M., Ryffel, D. B. & Sarlah, D., 2020, (Accepted/In press) In : Tetrahedron. 131318.

Research output: Contribution to journalArticle

A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator

Sun, H., Zhao, H. & Ang, E. L., Apr 17 2020, In : ACS synthetic biology. 9, 4, p. 698-705 8 p.

Research output: Contribution to journalArticle

A new dynamic wetness index (DWI) predicts soil moisture persistence and correlates with key indicators of surface soil geochemistry

Li, M., Foster, E. J., Le, P. V. V., Yan, Q., Stumpf, A., Hou, T., Papanicolaou, A. N. T., Wacha, K. M., Wilson, C. G., Wang, J., Kumar, P. & Filley, T., Jun 1 2020, In : Geoderma. 368, 114239.

Research output: Contribution to journalArticle

A New Framework for Exploring Process Controls of Flow Duration Curves

Ghotbi, S., Wang, D., Singh, A., Blöschl, G. & Sivapalan, M., Jan 1 2020, In : Water Resources Research. 56, 1, e2019WR026083.

Research output: Contribution to journalArticle

A Newly Synthesized Tris(crown ether) Ionophore for Assisted Ion Transfer at NanoITIES Electrodes

Chen, R., Yang, A., Chang, A., Oweimrin, P. F., Romero, J., Vichitcharoenpaisarn, P., Tapia, S., Ha, K., Villaflor, C. & Shen, M., Feb 17 2020, In : ChemElectroChem. 7, 4, p. 967-974 8 p.

Research output: Contribution to journalArticle

A New Variational Method for Deep Supervised Semantic Image Hashing

Zhuang, F. & Moulin, P., May 2020, 2020 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2020 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 4532-4536 5 p. 9053665. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2020-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An exploratory analysis of individual differences in mind wandering content and consistency

Welhaf, M. S., Smeekens, B. A., Gazzia, N. C., Perkins, J. B., Silvia, P. J., Meier, M. E., Kwapil, T. R. & Kane, M. J., Jun 2020, In : Psychology of Consciousness: Theory Research, and Practice. 7, 2, p. 103-125 23 p.

Research output: Contribution to journalArticle

Angiogenic biomaterials to promote therapeutic regeneration and investigate disease progression

Ngo, M. T. & Harley, B. A. C., Oct 2020, In : Biomaterials. 255, 120207.

Research output: Contribution to journalReview article

An in-silico human cell model reveals the influence of spatial organization on RNA splicing

Ghaemi, Z., Peterson, J. R., Gruebele, M. & Luthey-Schulten, Z., Mar 25 2020, In : PLoS computational biology. 16, 3, e1007717.

Research output: Contribution to journalArticle

Open Access

An integrated process-based model of flutes and tool marks in deep-water environments: Implications for palaeohydraulics, the Bouma sequence and hybrid event beds

Peakall, J., Best, J., Baas, J. H., Hodgson, D. M., Clare, M. A., Talling, P. J., Dorrell, R. M. & Lee, D. R., Jun 1 2020, In : Sedimentology. 67, 4, p. 1601-1666 66 p.

Research output: Contribution to journalArticle

Open Access

An in vitro mimic of in-cell solvation for protein folding studies

Davis, C. M., Deutsch, J. & Gruebele, M., Apr 2020, In : Protein Science. 29, 4, p. 1060-1068 9 p.

Research output: Contribution to journalArticle

Anisotropic mineralized collagen scaffolds accelerate osteogenic response in a glycosaminoglycan-dependent fashion

Dewey, M. J., Nosatov, A. V., Subedi, K. & Harley, B., Apr 21 2020, In : RSC Advances. 10, 26, p. 15629-15641 13 p.

Research output: Contribution to journalArticle

Open Access

An organometallic polymer-based microfluidic platform for redox-mediated electrochemical sensing

Su, X., Harynuk, A., Alan Hatton, T. & Nazemifard, N., 2020, 21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017. Chemical and Biological Microsystems Society, p. 507-508 2 p. (21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Antibody Targeted PET Imaging of 64Cu-DOTA-Anti-CEA PEGylated Lipid Nanodiscs in CEA Positive Tumors

Wong, P., Li, L., Chea, J., Hu, W., Poku, E., Ebner, T., Bowles, N., Wong, J. Y. C., Yazaki, P. J., Sligar, S. & Shively, J. E., Mar 18 2020, In : Bioconjugate Chemistry. 31, 3, p. 743-753 11 p.

Research output: Contribution to journalArticle

Antioxidant Therapies in Traumatic Brain Injury

Pietro, V. D., Yakoub, K. M., Caruso, G., Lazzarino, G., Signoretti, S., Barbey, A. K., Tavazzi, B., Lazzarino, G., Belli, A. & Amorini, A. M., Mar 22 2020, In : Antioxidants. 9, 3, 260.

Research output: Contribution to journalReview article

Open Access

Antiproton over proton and K over K+ multiplicity ratios at high z in DIS

The COMPASS Collaboration, Aug 10 2020, In : Physics Letters, Section B: Nuclear, Elementary Particle and High-Energy Physics. 807, 135600.

Research output: Contribution to journalArticle

Open Access

An X-ray detection of star formation in a highly magnified giant arc

Bayliss, M. B., McDonald, M., Sharon, K., Gladders, M. D., Florian, M., Chisholm, J., Dahle, H., Mahler, G., Paterno-Mahler, R., Rigby, J. R., Rivera-Thorsen, E., Whitaker, K. E., Allen, S., Benson, B. A., Bleem, L. E., Brodwin, M., Canning, R. E. A., Chiu, I., Hlavacek-Larrondo, J., Khullar, G. & 2 others, Reichardt, C. & Vieira, J. D., Feb 1 2020, In : Nature Astronomy. 4, 2, p. 159-166 8 p.

Research output: Contribution to journalLetter

A Pathway for Degradation of Uracil to Acetyl Coenzyme A in Bacillus megaterium

Zhu, D., Wei, Y., Yin, J., Liu, D., Ang, E. L., Zhao, H. & Zhang, Y., Mar 18 2020, In : Applied and environmental microbiology. 86, 7

Research output: Contribution to journalArticle