College of Agricultural, Consumer and Environmental Sciences

Research Output 1970 2019

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Review article
2019

Computational methods to identify bimodal gene expression and facilitate personalized treatment in cancer patients

Moody, L., Mantha, S., Chen, H. & Pan, Y-X., Mar 1 2019, In : Journal of Biomedical Informatics: X. 1, 100001.

Research output: Contribution to journalReview article

Computational methods
Gene expression
Genes
Gene Expression
Neoplasms

Food-First Approach to Enhance the Regulation of Post-exercise Skeletal Muscle Protein Synthesis and Remodeling

Burd, N. A., Beals, J. W., Martinez, I. G., Salvador, A. F. & Skinner, S. K., Feb 15 2019, In : Sports Medicine. 49, p. 59-68 10 p.

Research output: Contribution to journalReview article

Muscle Proteins
Skeletal Muscle
Food
Dietary Proteins
Proteins
2018

Achieving optimal post-exercise muscle protein remodeling in physically active adults through whole food consumption

van Vliet, S., Beals, J. W., Martinez, I. G., Skinner, S. K. & Burd, N. A., Feb 16 2018, In : Nutrients. 10, 2, 224.

Research output: Contribution to journalReview article

Muscle Proteins
muscle protein
food consumption
exercise
Food

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & Delucia, E. H., Jan 15 2018, In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

alley cropping
species diversity
crop
crops
fodder

A model integrating social-cultural concepts of nature into frameworks of interaction between social and natural systems

Muhar, A., Raymond, C. M., van den Born, R. J. G., Bauer, N., Böck, K., Braito, M., Buijs, A., Flint, C., de Groot, W. T., Ives, C. D., Mitrofanenko, T., Plieninger, T., Tucker, C. & Van Riper, C. J., May 12 2018, In : Journal of Environmental Planning and Management. 61, 5-6, p. 756-777 22 p.

Research output: Contribution to journalReview article

Natural resources management
ecological system
research method
interaction
social system

Applications of power ultrasound in oriented modification and degradation of pectin: A review

Wang, W., Chen, W., Zou, M., Lv, R., Wang, D., Hou, F., Feng, H., Ma, X., Zhong, J., Ding, T., Ye, X. & Liu, D., Oct 1 2018, In : Journal of Food Engineering. 234, p. 98-107 10 p.

Research output: Contribution to journalReview article

pectins
degradation
Technology
sustainable technology
functional properties

Applications of social network analysis to obesity: a systematic review

Zhang, S., de la Haye, K., Ji, M. & An, R., Jul 1 2018, In : Obesity Reviews. 19, 7, p. 976-988 13 p.

Research output: Contribution to journalReview article

Social Support
Obesity
Interpersonal Relations
Cross-Sectional Studies
Body Weight

A promising trend for field information collection: An air-ground multi-sensor monitoring system

Zhang, Y., Chen, D., Wang, S. & Tian, L., Jun 1 2018, In : Information Processing in Agriculture. 5, 2, p. 224-233 10 p.

Research output: Contribution to journalReview article

Unmanned aerial vehicles (UAV)
monitoring system
sensors (equipment)
Wireless sensor networks
Remote sensing

Archaea-First and the Co-Evolutionary Diversification of Domains of Life

Staley, J. T. & Caetano-Anolles, G., Aug 1 2018, In : BioEssays. 40, 8, 1800036.

Research output: Contribution to journalReview article

Archaea
Bacteria
Cells
Eukaryota
Methane

Biological consequences of weak acidification caused by elevated carbon dioxide in freshwater ecosystems

Hasler, C. T., Jeffrey, J. D., Schneider, E. V. C., Hannan, K. D., Tix, J. A. & Suski, C. D., Jan 1 2018, In : Hydrobiologia. 806, 1

Research output: Contribution to journalReview article

freshwater ecosystem
acidification
carbon dioxide
biota
ecosystems

Bioprocess engineering for biohythane production from low-grade waste biomass: technical challenges towards scale up

Liu, Z., Si, B., Li, J., He, J., Zhang, C., Lu, Y., Zhang, Y. & Xing, X. H., Apr 1 2018, In : Current Opinion in Biotechnology. 50, p. 25-31 7 p.

Research output: Contribution to journalReview article

Biomass
Fermentation
Biological Phenomena
Biofuels
Biogas

Chronic Noise Exposure and Adiposity: A Systematic Review and Meta-analysis

An, R., Wang, J., Ashrafi, S. A., Yang, Y. & Guan, C., Sep 1 2018, In : American Journal of Preventive Medicine. 55, 3, p. 403-411 9 p.

Research output: Contribution to journalReview article

Adiposity
Noise
Meta-Analysis
Waist Circumference
Library Science

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C., Cerri, C. E. P., Ceulemans, R., Davies, C. A., Delucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 1 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

energy crops
bioenergy
Land use
Crops
Greenhouse gases

Current context on chocolate flavor development — a review

Engeseth, N. J. & Ac Pangan, M. F., Jun 1 2018, In : Current Opinion in Food Science. 21, p. 84-91 8 p.

Research output: Contribution to journalReview article

cocoa (beverage)
flavor
Cacao
cocoa beans
cocoa butter

Does upper respiratory infection exacerbate symptoms of multiple sclerosis?

Ryder, E. & Steelman, A. J., Apr 1 2018, In : Future Microbiology. 13, 5, p. 503-505 3 p.

Research output: Contribution to journalReview article

Respiratory Tract Infections
Multiple Sclerosis

Editorial: Building strategies for porcine cancer models

Collares, T., Seixas, F. K., Rund, L. A. & Schook, L. B., Oct 2 2018, In : Frontiers in Genetics. 9, OCT, 377.

Research output: Contribution to journalReview article

Swine
Neoplasms

Effectiveness of A Body Shape Index (ABSI) in predicting chronic diseases and mortality: a systematic review and meta-analysis

Ji, M., Zhang, S. & An, R., May 1 2018, In : Obesity Reviews. 19, 5, p. 737-759 23 p.

Research output: Contribution to journalReview article

Meta-Analysis
Chronic Disease
Mortality
Waist Circumference
Type 2 Diabetes Mellitus

Extraction techniques and analysis of anthocyanins from food sources by mass spectrometry: An update

Ongkowijoyo, P., Luna-Vital, D. A. & Demejia, E., Jun 1 2018, In : Food Chemistry. 250, p. 113-126 14 p.

Research output: Contribution to journalReview article

Food Analysis
Anthocyanins
Mass spectrometry
anthocyanins
Mass Spectrometry

Gasification of biowaste: A critical review and outlooks

Watson, J., Zhang, Y., Si, B., Chen, W. T. & de Souza, R., Mar 1 2018, In : Renewable and Sustainable Energy Reviews. 83, p. 1-17 17 p.

Research output: Contribution to journalReview article

Gasification
Steam
Gas heating
Tar
Gases

Global warming and obesity: a systematic review

An, R., Ji, M. & Zhang, S., Feb 1 2018, In : Obesity Reviews. 19, 2, p. 150-163 14 p.

Research output: Contribution to journalReview article

Global Warming
Obesity
Renewable Energy
Fossil Fuels
Urbanization

Impact of ambient air pollution on physical activity among adults: a systematic review and meta-analysis

An, R., Zhang, S., Ji, M. & Guan, C., Mar 1 2018, In : Perspectives in Public Health. 138, 2, p. 111-121 11 p.

Research output: Contribution to journalReview article

Air Pollution
Meta-Analysis
Exercise
Air Pollutants
Cross-Sectional Studies

Integration of sudden death syndrome resistance loci in the soybean genome

Chang, H. X., Roth, M. G., Wang, D., Cianzio, S. R., Lightfoot, D. A., Hartman, G. L. & Chilvers, M. I., Apr 1 2018, In : Theoretical and Applied Genetics. 131, 4, p. 757-773 17 p.

Research output: Contribution to journalReview article

Sudden Death
Soybeans
Genome
soybeans
death

Microbiome-mediated effects of the Mediterranean diet on inflammation

Bailey, M. A. & Holscher, H. D., May 1 2018, In : Advances in Nutrition. 9, 3, p. 93-206 114 p.

Research output: Contribution to journalReview article

Mediterranean Diet
endotoxemia
Mediterranean diet
Endotoxemia
Microbiota

Molecular mechanisms underlying the link between diet and DNA methylation

Kadayifci, F. Z., Zheng, S. & Pan, Y-X., Dec 14 2018, In : International Journal of Molecular Sciences. 19, 12, 4055.

Research output: Contribution to journalReview article

diets
methylation
DNA Methylation
Nutrition
Epigenomics

Non-antibiotic feed additives in diets for pigs: A review

Liu, Y., Espinosa, C. D., Abelilla, J. J., Casas, G. A., Lagos, L. V., Lee, S. A., Kwon, W. B., Mathai, J. K., Navarro, D. M. D. L., Jaworski, N. W. & Stein, H-H., Jun 1 2018, In : Animal Nutrition. 4, 2, p. 113-125 13 p.

Research output: Contribution to journalReview article

feed additives
Swine
Diet
Prebiotics
swine
Nutrigenomics
nutrigenomics
hyperlipidemia
Dyslipidemias
Lipid Metabolism

Obesity prevalence and voting behaviors in the 2016 US presidential election

An, R. & Ji, M., Sep 1 2018, In : American Journal of Health Behavior. 42, 5, p. 21-31 11 p.

Research output: Contribution to journalReview article

voting behavior
Politics
presidential election
candidacy
Obesity

Optimizing RNA-seq studies to investigate herbicide resistance

Giacomini, D. A., Gaines, T., Beffa, R. & Tranel, P. J., Oct 1 2018, In : Pest Management Science. 74, 10, p. 2260-2264 5 p.

Research output: Contribution to journalReview article

herbicide resistance
sequence analysis
herbicides
weed science
biotypes

Origins and structure of chloroplastic and mitochondrial plant protoporphyrinogen oxidases: implications for the evolution of herbicide resistance

Dayan, F. E., Barker, A. & Tranel, P. J., Oct 1 2018, In : Pest Management Science. 74, 10, p. 2226-2234 9 p.

Research output: Contribution to journalReview article

protoporphyrinogen oxidase
herbicide resistance
mutation
arginine
Amaranthus tuberculatus

Peptides from legumes with antigastrointestinal cancer potential: current evidence for their molecular mechanisms

Luna-Vital, D. & Demejia, E., Apr 1 2018, In : Current Opinion in Food Science. 20, p. 13-18 6 p.

Research output: Contribution to journalReview article

Fabaceae
legumes
peptides
Peptides
neoplasms

Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO2]?

Ainsworth, E. & Lemonnier, P., Jun 1 2018, In : Current opinion in plant biology. 43, p. 50-56 7 p.

Research output: Contribution to journalReview article

phloem
plant response
carbon dioxide
phloem loading
sucrose

Priorities for wheat intensification in the Eastern Indo-Gangetic Plains

Park, A., Davis, A. & McDonald, A., Jun 1 2018, In : Global Food Security. 17, p. 1-8 8 p.

Research output: Contribution to journalReview article

Triticum
wheat
plain

Processed and raw tomato consumption and risk of prostate cancer: a systematic review and dose–response meta-analysis

Rowles, J. L., Ranard, K. M., Applegate, C. C., Jeon, S., An, R. & Erdman, J. W., Sep 1 2018, In : Prostate Cancer and Prostatic Diseases. 21, 3, p. 319-336 18 p.

Research output: Contribution to journalReview article

Lycopersicon esculentum
Meta-Analysis
Prostatic Neoplasms
Odds Ratio
Confidence Intervals

Protected areas and the sustainable governance of forest resources

Miller, D. C. & Nakamura, K. S., Jun 1 2018, In : Current Opinion in Environmental Sustainability. 32, p. 96-103 8 p.

Research output: Contribution to journalReview article

forest resource
protected area
governance
resources
environmental economics

Review: The epic journey of sperm through the female reproductive tract

Miller, D. J., Jun 1 2018, In : Animal. 12, s1, p. s110-s120

Research output: Contribution to journalReview article

spermatozoa
fertilization (reproduction)
oviducts
oocytes
natural mating

Revisiting paradigms of Ca2+ signaling protein kinase regulation in plants

Bender, K. W., Zielinski, R. E. & Huber, S. C., Jan 15 2018, In : Biochemical Journal. 475, 1, p. 207-223 17 p.

Research output: Contribution to journalReview article

Protein Kinases
Chemical activation
Calcineurin
Sensors
Phosphotransferases

Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions

Caetano-Anolles, G., Nasir, A., Kim, K. M. & Caetano-Anollés, D., Oct 1 2018, In : Evolutionary Bioinformatics. 14

Research output: Contribution to journalReview article

Phylogeny
rooting
phylogeny
Biological Evolution
Data storage equipment

Soy consumption and the risk of prostate cancer: An updated systematic review and meta-analysis

Applegate, C. C., Rowles, J. L., Ranard, K. M., Jeon, S. & Erdman, J. W., Jan 4 2018, In : Nutrients. 10, 1, 40.

Research output: Contribution to journalReview article

Soy Foods
systematic review
prostatic neoplasms
meta-analysis
Isoflavones
Food and Beverages
Pediatric Obesity
state law
childhood
food

Strengths and limitations of Nitrogen rate recommendations for corn and opportunities for improvement

Morris, T. F., Murrell, T. S., Beegle, D. B., Camberato, J. J., Ferguson, R. B., Grove, J., Ketterings, Q., Kyveryga, P. M., Laboski, C. A. M., McGrath, J. M., Meisinger, J. J., Melkonian, J., Moebius-Clune, B. N., Nafziger, E. D., Osmond, D., Sawyer, J. E., Scharf, P. C., Smith, W., Spargo, J. T., Van Es, H. M. & 1 othersYang, H., Jan 1 2018, In : Agronomy Journal. 110, 1, p. 1-37 37 p.

Research output: Contribution to journalReview article

nitrogen fertilizers
corn
nitrogen
ecological footprint
fertilizer rates

Temperate agroforestry research: considering multifunctional woody polycultures and the design of long-term field trials

Lovell, S. T., Dupraz, C., Gold, M., Jose, S., Revord, R., Stanek, E. & Wolz, K. J., Oct 1 2018, In : Agroforestry Systems. 92, 5, p. 1397-1415 19 p.

Research output: Contribution to journalReview article

polyculture
agroforestry
field experimentation
woody plant
woody plants

The Gastrointestinal Microbiome: A Review

Barko, P. C., McMichael, M., Swanson, K. S. & Williams, D. A., Jan 1 2018, In : Journal of veterinary internal medicine. 32, 1, p. 9-25 17 p.

Research output: Contribution to journalReview article

digestive system
Mammals
Health
Microbial Genome
mammals

The significance of cholesterol and its metabolite, 27-hydroxycholesterol in breast cancer

Nelson, E., May 5 2018, In : Molecular and Cellular Endocrinology. 466, p. 73-80 8 p.

Research output: Contribution to journalReview article

Metabolites
Cholesterol
Breast Neoplasms
Life Style
Selective Estrogen Receptor Modulators

Transmission, evolution, and endogenization: Lessons learned from recent retroviral invasions

Greenwood, A. D., O'Brien, S. P., Roca, A. L. & Eiden, M. V., Mar 1 2018, In : Microbiology and Molecular Biology Reviews. 82, 1, e00044-17.

Research output: Contribution to journalReview article

Retroviridae
Endogenous Retroviruses
Phascolarctidae
Germ Cells
Genome

Trends in research on forestry decentralization policies

Lund, J. F., Rutt, R. L. & Ribot, J. C., Jun 1 2018, In : Current Opinion in Environmental Sustainability. 32, p. 17-22 6 p.

Research output: Contribution to journalReview article

decentralization
forestry
trend
policy studies
epistemology

Urban Neighborhood and Residential Factors Associated with Breast Cancer in African American Women: a Systematic Review

Smith, B. P. & Madak-Erdogan, Z., Apr 1 2018, In : Hormones and Cancer. 9, 2, p. 71-81 11 p.

Research output: Contribution to journalReview article

African Americans
Breast Neoplasms
Delayed Diagnosis
Mammography
Social Class

Water transport in starchy foods: Experimental and mathematical aspects

Ozturk, O. K. & Takhar, P. S., Aug 1 2018, In : Trends in Food Science and Technology. 78, p. 11-24 14 p.

Research output: Contribution to journalReview article

food transport
sorption
Food
Water
starch

Wearable sensors: Modalities, challenges, and prospects

Heikenfeld, J., Jajack, A., Rogers, J., Gutruf, P., Tian, L., Pan, T., Li, R., Khine, M., Kim, J., Wang, J. & Kim, J., Jan 1 2018, In : Lab on a chip. 18, 2, p. 217-248 32 p.

Research output: Contribution to journalReview article

Technology
Technology Transfer
Software
Innovation
Skin
2017

27-Hydroxycholesterol, an endogenous selective estrogen receptor modulator

He, S. & Nelson, E., Oct 1 2017, In : Maturitas. 104, p. 29-35 7 p.

Research output: Contribution to journalReview article

Selective Estrogen Receptor Modulators
Estrogen Receptors
Cholesterol
Physiology
Cardiovascular Physiological Phenomena

Application of nutrigenomics in small ruminants: Lactation, growth, and beyond

Osorio, J. S., Vailati-Riboni, M., Palladino, A., Luo, J. & Loor, J. J., Sep 1 2017, In : Small Ruminant Research. 154, p. 29-44 16 p.

Research output: Contribution to journalReview article

Nutrigenomics
nutrigenomics
Ruminants
small ruminants
Lactation