Research Output

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2020

Optically guided mass spectrometry to screen microbial colonies for directed enzyme evolution

Xue, P., Si, T. & Zhao, H., 2020, Methods in Enzymology. Tawfik, D. S. (ed.). Academic Press Inc., p. 255-273 19 p. (Methods in Enzymology; vol. 644).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Construction and Screening of an Antigen-Derived Peptide Library Displayed on Yeast Cell Surface for CD4+ T Cell Epitope Identification

Wen, F., Smith, M. R. & Zhao, H., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 213-234 22 p. (Methods in Molecular Biology; vol. 2024).

Research output: Chapter in Book/Report/Conference proceedingChapter

Delta integration CRISPR-Cas (Di-CRISPR) in saccharomyces cerevisiae

Shi, S., Liang, Y., Ang, E. L. & Zhao, H., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 73-91 19 p. (Methods in Molecular Biology; vol. 1927).

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteases: Pivot points in functional proteomics

Verhamme, I. M., Leonard, S. E. & Perkins, R. C., 2019, Methods in Molecular Biology. Humana Press Inc., p. 313-392 80 p. (Methods in Molecular Biology; vol. 1871).

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Applying advanced dna assembly methods to generate pathway libraries

Eriksen, D. T., Chao, R. & Zhao, H., Mar 15 2018, Synthetic Biology: Parts, Devices and Applications. Wiley-VCH Verlag, p. 331-347 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

In vitro assay for measuring receptor-kinase activity in the bacillus subtilis chemotaxis pathway

Walukiewicz, H. E., Ordal, G. W. & Rao, C. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 95-105 11 p. (Methods in Molecular Biology; vol. 1729).

Research output: Chapter in Book/Report/Conference proceedingChapter

Metabolic Engineering of Saccharomyces cerevisiae Using a Trifunctional CRISPR/Cas System for Simultaneous Gene Activation, Interference, and Deletion

Schultz, C., Lian, J. & Zhao, H., Jan 1 2018, Methods in Enzymology. Scrutton, N. (ed.). Academic Press Inc., p. 265-276 12 p. (Methods in Enzymology; vol. 608).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oxygen reduction catalysts on nanoparticle electrodes

Tsao, K. C. & Yang, H., Jan 1 2018, Encyclopedia of Interfacial Chemistry: Surface Science and Electrochemistry. Elsevier, p. 796-811 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pathway design, engineering, and optimization

Garcia-Ruiz, E., HamediRad, M. & Zhao, H., Jan 1 2018, Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, (Advances in Biochemical Engineering/Biotechnology; vol. 162).

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

2.16 Collagen-GAG materials

Hortensius, R. A. & Harley, B. A. C., Jan 1 2017, Comprehensive Biomaterials II. Elsevier, p. 351-380 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Application of Hidden Markov models in biomolecular simulations

Shukla, S., Shamsi, Z., Moffett, A. S., Selvam, B. & Shukla, D., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1552. p. 29-41 13 p. (Methods in Molecular Biology; vol. 1552).

Research output: Chapter in Book/Report/Conference proceedingChapter

Dynamic measures of flagellar gene expression

Koirala, S. & Rao, C. V., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 73-83 11 p. (Methods in Molecular Biology; vol. 1593).

Research output: Chapter in Book/Report/Conference proceedingChapter

Noninvasive optical imaging of stem cell differentiation in biomaterials using photonic crystal surfaces

Choi, J. S., Zhuo, Y., Cunningham, B. T. & Harley, B. A. C., 2017, Monitoring and Evaluation of Biomaterials and their Performance In Vivo. Elsevier Inc., p. 195-207 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Production and use of H2O2 for atom-efficient functionalization of hydrocarbons and small molecules

Wilson, N. M., Bregante, D. T., Priyadarshini, P. & Flaherty, D. W., Jan 1 2017, Catalysis. Spivey, J. J. & Han, Y-F. (eds.). Royal Society of Chemistry, p. 122-212 91 p. (Catalysis; vol. 29).

Research output: Chapter in Book/Report/Conference proceedingChapter

Strain development by whole-cell directed evolution

Si, T., Lian, J. & Zhao, H., Jan 1 2017, Directed Enzyme Evolution: Advances and Applications. Springer International Publishing, p. 173-200 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Zymomonas mobilis for the conversion of lignocellulosic biomass to fuels and chemicals

Agrawal, M., Dunn, K. L. & Rao, C. V., Jan 1 2017, Engineering of Microorganisms for the Production of Chemicals and Biofuels from Renewable Resources. Springer International Publishing, p. 67-92 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Advances in electrochemical science and engineering

Alkire, R. C., Bartlett, P. N. & Lipkowski, J., May 5 2016, Electrochemistry of Carbon Electrodes. Wiley, Vol. 16. p. 1-449 449 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biocatalysis for Drug Discovery and Development

Liang, Y., Zhang, M. M., Ang, E. L. & Zhao, H., May 13 2016, Green Biocatalysis. Wiley, p. 421-455 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Combined and iterative use of computational design and directed evolution for protein-ligand binding design

Wang, M. & Zhao, H., May 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 139-153 15 p. (Methods in Molecular Biology; vol. 1414).

Research output: Chapter in Book/Report/Conference proceedingChapter

Engineered minicellulosomes for consolidated bioprocessing

Liang, Y., Ang, E. L. & Zhao, H., Jul 11 2016, Handbook of Carbohydrate-Modifying Biocatalysts. Pan Stanford Publishing Pte. Ltd., Vol. 2. p. 965-992 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

High-Efficiency Genome Editing of Streptomyces Species by an Engineered CRISPR/Cas System

Wang, Y., Cobb, R. E. & Zhao, H., 2016, Methods in Enzymology. O'Connor, S. E. (ed.). Academic Press Inc., p. 271-284 14 p. (Methods in Enzymology; vol. 575).

Research output: Chapter in Book/Report/Conference proceedingChapter

High-throughput screening or selection methods for evolutionary enzyme engineering

Shi, S., Zhang, H., Ang, E. L. & Zhao, H., May 17 2016, Understanding Enzymes: Function, Design, Engineering and Analysis. Pan Stanford Publishing Pte. Ltd., p. 707-744 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microfluidic methods in single cell biology

Mukherjee, A. & Schroeder, C. M., Jan 1 2016, Microfluidic Methods for Molecular Biology. Springer International Publishing, p. 19-54 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microfluidics for Studying Pharmacodynamics of Antibiotics

Mohan, R., Desai, A. V., Sanpitakseree, C. & Kenis, P. J. A., Apr 29 2016, Micro- and Nanosystems for Biotechnology. Wiley, p. 177-202 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Advances in electrochemical science and engineering

Alkire, R. C., Bartlett, P. N. & Lipkowski, J., Aug 21 2015, Electrochemical Engineering Across Scales: From Molecules to Processes. Wiley, Vol. 15. p. 1-328 328 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomaterial Scaffolds for Tendon Tissue Engineering

Hortensius, R., Mozdzen, L. & Harley, B., Jan 1 2015, Tendon Regeneration: Understanding Tissue Physiology and Development to Engineer Functional Substitutes. Elsevier Inc., p. 349-380 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemical Synthesis of Nanoscale Heterogeneous Catalysts

Wu, J. & Yang, H., Apr 18 2015, Heterogeneous Catalysis at Nanoscale for Energy Applications. Wiley, p. 9-29 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanomaterials for diagnostic imaging of the brain

Qin, E. & Kong, H., Jul 23 2015, Biomedical Engineering: Frontier Research and Converging Technologies. Springer International Publishing, Vol. 9. p. 77-89 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Advances in Electrochemical Science and Engineering

Alkire, R. C., Kolb, D. M., Kibler, L. A. & Lipkowski, J., Jan 13 2014, Electrocatalysis. Wiley-Blackwell, Vol. 14. p. 1-303 303 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

A two-plasmid bacterial selection system for characterization and engineering of homing endonucleases

Sun, N. & Zhao, H., 2014, Homing Endonucleases: Methods and Protocols. Humana Press Inc., p. 87-96 10 p. (Methods in Molecular Biology; vol. 1123).

Research output: Chapter in Book/Report/Conference proceedingChapter

Directed evolution of enzymes for industrial biocatalysis

Liang, Y., Ang, E. L. & Zhao, H., Jan 1 2014, Industrial Biocatalysis. Pan Stanford Publishing Pte. Ltd., p. 73-114 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

Advances in electrochemical science and engineering

Alkire, R. C., Kolb, D. M., Lipkowski, J. & Ross, P. N., Aug 29 2013, Photoelectrochemical Materials and Energy Conversion Processes. Wiley, Vol. 13. p. 1-359 359 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomaterials for Cell-Based Therapeutic Angiogenesis

Rich, M. H. & Kong, H., Jan 1 2013, Studies in Mechanobiology, Tissue Engineering and Biomaterials. Springer, p. 247-259 13 p. (Studies in Mechanobiology, Tissue Engineering and Biomaterials; vol. 12).

Research output: Chapter in Book/Report/Conference proceedingChapter

Construction and engineering of large biochemical pathways via DNA assembler

Shao, Z. & Zhao, H., 2013, Synthetic Biology. Polizzi, K. & Kontoravdi, C. (eds.). p. 85-106 22 p. (Methods in Molecular Biology; vol. 1073).

Research output: Chapter in Book/Report/Conference proceedingChapter

Construction and screening of an antigen-derived peptide library displayed on yeast cell surface for CD4+ T cell epitope identification

Wen, F. & Zhao, H., Sep 20 2013, Immunoproteomics: Methods and Protocols. Fulton, K. & Twine, S. (eds.). p. 245-264 20 p. (Methods in Molecular Biology; vol. 1061).

Research output: Chapter in Book/Report/Conference proceedingChapter

Drug Discovery and Development via Synthetic Biology

Cobb, R. E., Luo, Y., Freestone, T. & Zhao, H., Aug 27 2013, Synthetic Biology. Elsevier Inc., p. 183-206 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

In Vivo Synthesis of Tissues and Organs

Harley, B. A. & Yannas, I. V., Nov 1 2013, Principles of Tissue Engineering: Fourth Edition. Elsevier Inc., p. 325-355 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pathway engineering as an enabling synthetic biology tool

Eriksen, D. T., Li, S. & Zhao, H., Aug 27 2013, Synthetic Biology. Elsevier Inc., p. 43-61 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Secondary ion mass spectrometry imaging of biological membranes at high spatial resolution

Klitzing, H. A., Weber, P. K. & Kraft, M. L., Jan 1 2013, Nanoimaging: Methods and Protocols. Sousa, A. & Kruhlak, M. (eds.). p. 483-501 19 p. (Methods in Molecular Biology; vol. 950).

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthesis of layered, graded bioscaffolds

Weisgerber, D. W., Caliari, S. R. & Harley, B. A., Jan 1 2013, Structural Interfaces and Attachments in Biology. Springer New York, Vol. 9781461433170. p. 351-371 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

DNA assembler: A synthetic biology tool for characterizing and engineering natural product gene clusters

Shao, Z. & Zhao, H., 2012, Natural Product Biosynthesis by Microorganisms and Plants, Part C. Academic Press Inc., p. 203-224 22 p. (Methods in Enzymology; vol. 517).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA assembler method for construction of zeaxanthin-producing strains of saccharomyces cerevisiae

Shao, Z., Luo, Y. & Zhao, H., 2012, Microbial Carotenoids From Fungi: Methods and Protocols. Jose-Luis, B. (ed.). p. 251-262 12 p. (Methods in Molecular Biology; vol. 898).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mutagenic inverted repeats assisted genome engineering (MIRAGE) in saccharomyces cerevisiae: Deletion of gal7

Nair, N. U. & Zhao, H., Jan 20 2012, Microbial Metabolic Engineering: Methods and Protocols. Cheng, Q. (ed.). p. 63-73 11 p. (Methods in Molecular Biology; vol. 834).

Research output: Chapter in Book/Report/Conference proceedingChapter

Strain Improvement via Evolutionary Engineering

Kim, B., Du, J. & Zhao, H., Oct 24 2012, Engineering Complex Phenotypes in Industrial Strains. John Wiley and Sons, p. 111-131 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2011

Altering Enzyme Substrate and Cofactor Specificity via Protein Engineering

Desieno, M., Du, J. & Zhao, H., Mar 9 2011, Protein Engineering Handbook, Volume 1 & Volume 2. Wiley-VCH, Vol. 2. p. 777-796 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomaterials for studies in cellular mechanotransduction

De Volder, R. & Kong, H., Dec 1 2011, Mechanobiology of Cell-Cell and Cell-Matrix Interactions. Springer US, p. 267-277 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Collagen-GAG materials

Caliari, S. R. & Harley, B. A., Oct 1 2011, Comprehensive Biomaterials. Elsevier, Vol. 2. p. 279-302 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Drug Discovery and Development by Combinatorial Biosynthesis

Desieno, M. A., Denard, C. A. & Zhao, H., May 25 2011, Enzyme Technologies: Metagenomics, Evolution, Biocatalysis, and Biosynthesis. John Wiley and Sons, p. 251-283 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Formation of Ultra-Shallow Junctions

Seebauer, E. G. & Gorai, P., Jan 1 2011, Comprehensive Semiconductor Science and Technology. Elsevier Inc., Vol. 1-6. p. 86-131 46 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantifying integrin-ligand engagement and cell phenotype in 3D scaffolds

DeVolder, R. J. & Kong, H., Oct 1 2011, Comprehensive Biomaterials. Elsevier, Vol. 5. p. 65-71 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter