Research Output 1972 2019

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2005

Interhead distance measurements in myosin VI via SHRImP support a simplified hand-over-hand model

Balci, H., Ha, T., Sweeney, H. L. & Selvin, P. R., Jul 2005, In : Biophysical journal. 89, 1, p. 413-417 5 p.

Research output: Contribution to journalArticle

Hand
Head
Cryoelectron Microscopy
Actomyosin
myosin VI

In vivo HP1 targeting causes large-scale chromatin condensation and enhanced histone lysine methylation

Verschure, P. J., Van Der Kraan, I., De Leeuw, W., Van Der Vlag, J., Carpenter, A. E., Belmont, A. S. & Van Driel, R., Jun 1 2005, In : Molecular and cellular biology. 25, 11, p. 4552-4564 13 p.

Research output: Contribution to journalArticle

Protein Transport
Histones
Methylation
Lysine
Chromatin

Mammalian target of rapamycin (mTOR) signaling is required for a late-stage fusion process during skeletal myotube maturation

Park, I. H. & Chen, J., Sep 9 2005, In : Journal of Biological Chemistry. 280, 36, p. 32009-32017 9 p.

Research output: Contribution to journalArticle

Skeletal Muscle Fibers
Sirolimus
Fusion reactions
Phosphotransferases
Muscle Development

Modified nodal integral method for the three-dimensional, time-dependent, incompressible Navier-Stokes equations

Wang, F. & Uddin, R., Jan 2005, In : Nuclear Science and Engineering. 149, 1, p. 107-114 8 p.

Research output: Contribution to journalArticle

Navier Stokes equations
Ordinary differential equations
Prisms
Partial differential equations
Convection

Molecular motors one at a time: FIONA to the rescue

Kural, C., Balci, H. & Selvin, P. R., Nov 30 2005, In : Journal of Physics Condensed Matter. 17, 47

Research output: Contribution to journalArticle

myosins
Myosin Type V
Fluorescence
ribonucleic acids
Dyneins

Neural and eye-specific defects associated with loss of the Imitation Switch (ISWI) chromatin remodeler in Xenopus laevis

Dirscherl, S. S., Henry, J. J. & Krebs, J. E., Nov 1 2005, In : Mechanisms of Development. 122, 11, p. 1157-1170 14 p.

Research output: Contribution to journalArticle

Xenopus laevis
Xenopus
Chromatin
Adenosine Triphosphate
Switch Genes

Neutrophil microtubules suppress polarity and enhance directional migration

Xu, J., Wang, F., Van Keymeulen, A., Rentel, M. & Bourne, H. R., May 10 2005, In : Proceedings of the National Academy of Sciences of the United States of America. 102, 19, p. 6884-6889 6 p.

Research output: Contribution to journalArticle

Nocodazole
Microtubules
methionyl-leucyl-phenylalanine
Neutrophils
Pseudopodia

New light on an old paradox: Site-dependent effects of carbachol on circadian rhythms

Buchanan, G. F. & Gillette, M. L., Jun 2005, In : Experimental Neurology. 193, 2, p. 489-496 8 p.

Research output: Contribution to journalArticle

Carbachol
Circadian Rhythm
Suprachiasmatic Nucleus
Cholinergic Agents
Light

Oligodeoxynucleotide methods for analyzing the circadian clock in the suprachiasmatic nucleus

Tischkau, S. A. & Gillette, M. L., Jan 1 2005, In : Methods in enzymology. 393, p. 593-610 18 p., 31.

Research output: Contribution to journalArticle

Circadian Clocks
Suprachiasmatic Nucleus
Oligodeoxyribonucleotides
Periodicity
Clocks

Regulating gene expression through RNA nuclear retention

Prasanth, K. V., Prasanth, S. G., Xuan, Z., Hearn, S., Freier, S. M., Bennett, C. F., Zhang, M. Q. & Spector, D. L., Oct 21 2005, In : Cell. 123, 2, p. 249-263 15 p.

Research output: Contribution to journalArticle

Nuclear RNA
Gene expression
RNA
Cationic Amino Acid Transporter 2
Gene Expression

Regulation of an insect cytochrome P450 monooxygenase gene (CYP6B1) by aryl hydrocarbon and xanthotoxin response cascades

Brown, R. P., McDonnell, C. M., Berenbaum, M. R. & Schuler, M. A., Sep 26 2005, In : Gene. 358, 1-2, p. 39-52 14 p.

Research output: Contribution to journalArticle

Methoxsalen
Hydrocarbons
Mixed Function Oxygenases
Cytochrome P-450 Enzyme System
Insects

Skeletal myocyte hypertrophy requires mTOR kinase activity and S6K1

Park, I. H., Erbay, E., Nuzzi, P. & Chen, J., Sep 10 2005, In : Experimental Cell Research. 309, 1, p. 211-219 9 p.

Research output: Contribution to journalArticle

Ribosomal Protein S6 Kinases
Skeletal Muscle Fibers
Sirolimus
Hypertrophy
Phosphotransferases

Small vertical movement of a K+ channel voltage sensor measured with luminescence energy transfer

Posson, D. J., Ge, P., Miller, C., Bezanilla, F. & Selvin, P. R., Aug 11 2005, In : Nature. 436, 7052, p. 848-851 4 p.

Research output: Contribution to journalArticle

Voltage-Gated Potassium Channels
Scorpions
S 6
Energy Transfer
Lipid Bilayers

Step-size is determined by neck length in myosin V

Sakamoto, T., Yildez, A., Selvin, P. R. & Sellers, J. R., Dec 13 2005, In : Biochemistry. 44, 49, p. 16203-16210 8 p.

Research output: Contribution to journalArticle

Myosin Type V
Neck
Actins
Actin Cytoskeleton
Calmodulin

Variations in CYP74B2 (Hydroperoxide Lyase) gene expression differentially affect hexenal signaling in the Columbia and Landsberg erecta ecotypes of arabidopsis

Duan, H., Huang, M. Y., Palacio, K. & Schuler, M. A., Dec 1 2005, In : Plant physiology. 139, 3, p. 1529-1544 16 p.

Research output: Contribution to journalArticle

Ecotype
Hexobarbital
lyases
hydroperoxides
ecotypes
2004

A 1.3 kb satellite DNA from Bubalus bubalis not conserved evolutionarily is transcribed

Bhatnagar, S., Bashamboo, A., Chattopadhyay, M., Prasanth, S. G. & Ali, S., Nov 1 2004, In : Zeitschrift fur Naturforschung - Section C Journal of Biosciences. 59, 11-12, p. 874-879 6 p.

Research output: Contribution to journalArticle

Satellite DNA
satellite DNA
RNA-directed DNA polymerase
Buffaloes
RNA-Directed DNA Polymerase

Activation of mTOR signaling by novel fluoromethylene phosphonate analogues of phosphatidic acid

Xu, Y., Fang, Y., Chen, J. & Prestwich, G. D., Mar 22 2004, In : Bioorganic and Medicinal Chemistry Letters. 14, 6, p. 1461-1464 4 p.

Research output: Contribution to journalArticle

Organophosphonates
Phosphatidic Acids
Sirolimus
Chemical activation
Ribosomal Protein S6 Kinases

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Wong, G. K. S., Liu, B., Wang, J., Zhang, Y., Yang, X., Zhang, Z., Meng, Q., Zhou, J., Li, D., Zhang, J., Ni, P., Li, S., Ran, L., Li, H., Zhang, J., Li, R., Li, S., Zheng, H., Lin, W., Li, G. & 94 others, Wang, X., Zhao, W., Li, J., Ye, C., Dai, M., Ruan, J., Zhou, Y., Li, Y., He, X., Zhang, Y., Wang, J., Huang, X., Tong, W., Chen, J., Ye, J., Chen, C., Wei, N., Li, G., Dong, L., Lan, F., Sun, Y., Zhang, Z., Yang, Z., Yu, Y., Huang, Y., He, D., Xi, Y., Wei, D., Qi, Q., Li, W., Shi, J., Wang, M., Xie, F., Wang, J., Zhang, X., Wang, P., Zhao, Y., Li, N., Yang, N., Dong, W., Hu, S., Zeng, C., Zheng, W., Hao, B., Hillier, L. D. W., Yang, S. P., Warren, W. C., Wilson, R. K., Brandström, M., Ellegren, H., Crooijmans, R. P. M. A., van der Poel, J. J., Bovenhuis, H., Groenen, M. A. M., Ovcharenko, I., Gordon, L., Stubbs, L., Lucas, S., Glavina, T., Aerts, A., Kaiser, P., Rothwell, L., Young, J. R., Rogers, S., Walker, B. A., van Hateren, A., Kaufman, J., Bumstead, N., Lamont, S. J., Zhou, H., Hocking, P. M., Morrice, D., de Koning, D. J., Law, A., Bartley, N., Burt, D. W., Hunt, H., Cheng, H. H., Gunnarsson, U., Wahlberg, P., Andersson, L., Kindlund, E., Tammi, M. T., Andersson, B., Webber, C., Ponting, C. P., Overton, I. M., Boardman, P. E., Tang, H., Hubbard, S. J., Wilson, S. A., Yu, J., Wang, J. & Yang, H. M., Dec 9 2004, In : Nature. 432, 7018, p. 717-722 6 p.

Research output: Contribution to journalArticle

Single Nucleotide Polymorphism
Chickens
Domestic Animals
Poultry
Nucleotides

Automated Microscopy Identifies Estrogen Receptor Subdomains with Large-Scale Chromatin Structure Unfolding Activity

Carpenter, A. E., Ashouri, A. & Belmont, A. S., Apr 1 2004, In : Cytometry Part A. 58, 2, p. 157-166 10 p.

Research output: Contribution to journalArticle

Estrogen Receptors
Chromatin
Microscopy
Steroid Receptors
Glucocorticoids

Biochemical and genetic interaction between the fragile X mental retardation protein 3nd the microRNA pathway

Jin, P., Zarnescu, D. C., Ceman, S. S., Nakamoto, M., Mowrey, J., Jongens, T. A., Nelson, D. L., Moses, K. & Warren, S. T., Feb 1 2004, In : Nature Neuroscience. 7, 2, p. 113-117 5 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
MicroRNAs
Molecular Biology
Ligands
Fragile X Syndrome

Carbostyril derivatives as antenna molecules for luminescent lanthanide chelates

Ge, P. & Selvin, P. R., Sep 1 2004, In : Bioconjugate Chemistry. 15, 5, p. 1088-1094 7 p.

Research output: Contribution to journalArticle

Lanthanoid Series Elements
Pentetic Acid
Rare earth elements
Antennas
Derivatives

Characterization and evolution of furanocoumarin-inducible cytochrome P450s in the parsnip webworm, Depressaria pastinacella

Li, W., Zangerl, A. R., Schuler, M. A. & Berenbaum, M. R., Dec 2004, In : Insect Molecular Biology. 13, 6, p. 603-613 11 p.

Research output: Contribution to journalArticle

Depressaria pastinacella
Pastinaca
psoralens
Cytochromes
cytochromes
NADPH-Ferrihemoprotein Reductase
Lipid bilayers
Lipid Bilayers
Arabidopsis
Cytochrome P-450 Enzyme System

Comparative genomics of rice and arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot

Nelson, D. R., Schuler, M. A., Paquette, S. M., Werck-Reichhart, D. & Bak, S., Jun 1 2004, In : Plant physiology. 135, 2, p. 756-772 17 p.

Research output: Contribution to journalArticle

Pseudogenes
pseudogenes
Genomics
Magnoliopsida
Liliopsida
Methoxsalen
Pheromones
allelochemicals
Transcription
cytochrome P-450

Differential large-scale chromatin compaction and intranuclear positioning of transcribed versus nontranscribed transgene arrays containing β-globin regulatory sequences

Dietzel, S., Zolghadr, K., Hepperger, C. & Belmont, A. S., Sep 1 2004, In : Journal of Cell Science. 117, 19, p. 4603-4614 12 p.

Research output: Contribution to journalArticle

Globins
Transgenes
Chromatin
Chromosome Positioning
Chromosomes
Suprachiasmatic Nucleus
hamsters
Cricetinae
physiology
oscillation

Early regeneration genes: Building a molecular profile for shared expression in cornea-lens transdifferentiation and hindlimb regeneration in Xenopus laevis

Wolfe, A. D., Crimmins, G., Cameron, J. A. & Henry, J. J., Aug 1 2004, In : Developmental Dynamics. 230, 4, p. 615-629 15 p.

Research output: Contribution to journalArticle

Xenopus laevis
Hindlimb
Cornea
Lenses
Regeneration

Embryonic expression of pre-initiation DNA replication factors in Xenopus laevis

Walter, B. E. & Henry, J. J., Nov 1 2004, In : Gene Expression Patterns. 5, 1, p. 81-89 9 p.

Research output: Contribution to journalArticle

Xenopus laevis
DNA Replication
Pronephros
Branchial Region
Proliferating Cell Nuclear Antigen

Expression of Protooncogene c-kit Receptor in Rat Testis and Uniqueness of Extracellular Domain Across the Species with Potential in Molecular Phylogeny

Prasanth, S. G., Chattopadhyay, M., Bhat, K. V. & Ali, S., Jan 1 2004, In : DNA and Cell Biology. 23, 1, p. 35-43 9 p.

Research output: Contribution to journalArticle

Proto-Oncogene Proteins c-kit
Phylogeny
Testis
Complementary DNA
Spermatocytes

Heightened susceptibility to chronic gastritis, hyperplasia and metaplasia in Kcnq1 mutant mice

Elso, C. M., Lu, X., Culiat, C. T., Rutledge, J. C., Cacheiro, N. L. A., Generoso, W. M. & Stubbs, L. J., Nov 15 2004, In : Human molecular genetics. 13, 22, p. 2813-2821 9 p.

Research output: Contribution to journalArticle

Metaplasia
Gastritis
Hyperplasia
Helicobacter Infections
Mucins

Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance

Prasanth, S. G., Kannanganattu, P. K., Siddiqui, K., Spector, D. L. & Stillman, B., Jul 7 2004, In : EMBO Journal. 23, 13, p. 2651-2663 13 p.

Research output: Contribution to journalArticle

Centrosome
Heterochromatin
Centromere
Chromosomes
S Phase

Hypophosphorylated SR splicing factors transiently localize around active nucleolar organizing regions in telophase daughter nuclei

Bubulya, P. A., Kannanganattu, P. K., Deerinck, T. J., Gerlich, D., Beaudouin, J., Ellisman, M. H., Ellenberg, J. & Spector, D. L., Oct 11 2004, In : Journal of Cell Biology. 167, 1, p. 51-63 13 p.

Research output: Contribution to journalArticle

Telophase
Proteins
RNA Polymerase II
Nuclear Proteins
Mitosis

Identification of variable amino acids in the SRS1 region of CYP6B1 modulating furanocoumarin metabolism

Pan, L., Wen, Z., Baudry, J., Berenbaum, M. R. & Schuler, M. A., Feb 1 2004, In : Archives of Biochemistry and Biophysics. 422, 1, p. 31-41 11 p.

Research output: Contribution to journalArticle

Heme
Metabolism
Amino Acids
Insects
Hydrogen

Inductive interactions and embryonic equivalence groups in a basal metazoan, the ctenophore Mnemiopsis leidyi

Henry, J. J. & Martindale, M. Q., Jan 2004, In : Evolution and Development. 6, 1, p. 17-24 8 p.

Research output: Contribution to journalArticle

Ctenophora
Mnemiopsis leidyi
metazoan
locomotion
cleavage

Kinesin Walks Hand-Over-Hand

Yildiz, A., Tomishige, M., Vale, R. D. & Selvin, P. R., Jan 30 2004, In : Science. 303, 5658, p. 676-678 3 p.

Research output: Contribution to journalArticle

Kinesin
Hand
Microtubules
Adenosine Triphosphate
Coloring Agents

Lineage-specific imprinting and evolution of the zinc-finger gene ZIM2

Kim, J., Bergmann, A., Lucas, S., Stone, R. & Stubbs, L. J., Jul 1 2004, In : Genomics. 84, 1, p. 47-58 12 p.

Research output: Contribution to journalArticle

Zinc Fingers
Exons
Genes
Testis
Mammals

Melatonin desensitizes endogenous MT2 melatonin receptors in the rat suprachiasmatic nucleus: Relevance for defining the periods of sensitivity of the mammalian circadian clock to melatonin

Gerdin, M. J., Masana, M. I., Rivera-Bermúdez, M. A., Hudson, R. L., Earnest, D. J., Gillette, M. L. & Dubocovich, M. L., Nov 1 2004, In : FASEB Journal. 18, 14, p. 1646-1656 11 p.

Research output: Contribution to journalArticle

Melatonin MT2 Receptor
Circadian Clocks
Suprachiasmatic Nucleus
melatonin
Melatonin
Methoxsalen
Pheromones
Insecticides
Cytochrome P-450 Enzyme System
Zea mays

Molecular profiling: Gene expression reveals discrete phases of lens induction and development in Xenopus laevis

Walter, B. E., Tian, Y., Garlisch, A. K., Carinato, M. E., Elkins, M. B., Wolfe, A. D., Schaefer, J. J., Perry, K. J. & Henry, J. J., Mar 24 2004, In : Molecular Vision. 10, p. 186-198 13 p.

Research output: Contribution to journalArticle

Xenopus laevis
Gene Expression Profiling
Lenses
Genes
Ectoderm

Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin

Yildiz, A., Park, H., Safer, D., Yang, Z., Chen, L. Q., Selvin, P. R. & Sweeney, H. L., Sep 3 2004, In : Journal of Biological Chemistry. 279, 36, p. 37223-37226 4 p.

Research output: Contribution to journalArticle

Actins
Hand
Fluorophores
Optical Imaging
Calmodulin

Nanometer localization of single fluorescent proteins: Evidence that myosin V walks hand-over-hand via telemark configuration

Snyder, G. E., Sakamoto, T., Hammer, J. A., Sellers, J. R. & Selvin, P. R., Sep 2004, In : Biophysical journal. 87, 3, p. 1776-1783 8 p.

Research output: Contribution to journalArticle

Myosin Type V
Myosins
Hand
Proteins
Actin Cytoskeleton

Nanometre localization of single ReAsH molecules

Park, H., Hanson, G. T., Duff, S. R. & Selvin, P. R., Dec 1 2004, In : Journal of Microscopy. 216, 3, p. 199-205 7 p.

Research output: Contribution to journalArticle

cysteinylcysteine
Calmodulin
Photons
Coloring Agents
Observation

Polarity and proliferation are controlled by distinct signaling pathways downstream of PI3-kinase in breast epithelial tumor cells

Liu, H., Radisky, D. C., Wang, F. & Bissell, M. J., Feb 16 2004, In : Journal of Cell Biology. 164, 4, p. 603-612 10 p.

Research output: Contribution to journalArticle

Phosphatidylinositol 3-Kinase
Phosphatidylinositol 3-Kinases
Epithelial Cells
Breast Neoplasms
Phenotype

Protein kinase G type II is required for night-to-day progression of the mammalian circadian clock

Tischkau, S. A., Mitchell, J. W., Pace, L. A., Barnes, J. W., Barnes, J. A. & Gillette, M. L., Aug 19 2004, In : Neuron. 43, 4, p. 539-549 11 p.

Research output: Contribution to journalArticle

Cyclic GMP-Dependent Protein Kinases
Circadian Clocks
Messenger RNA
Suprachiasmatic Nucleus
Oligodeoxyribonucleotides

Purification and Analyses of Histone H1 Variants and H1 Posttranslational Modifications

Mizzen, C. A., Feb 4 2004, In : Methods in enzymology. 375, p. 278-297 20 p.

Research output: Contribution to journalArticle

Molecular Sequence Data
Amino Acid Sequence Homology
Poly(ADP-ribose) Polymerases
Ion Exchange Chromatography
Electrophoresis, Gel, Two-Dimensional

Regulation of peroxisome proliferator-activated receptor-γ activity by mammalian target of rapamycin and amino acids in adipogenesis

Kim, J. E. & Chen, J., Nov 1 2004, In : Diabetes. 53, 11, p. 2748-2756 9 p.

Research output: Contribution to journalArticle

Adipogenesis
Peroxisome Proliferator-Activated Receptors
Sirolimus
Amino Acids
Food

Single-molecule high-resolution imaging with photobleaching

Gordon, M. P., Ha, T. & Selvin, P. R., Apr 27 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 17, p. 6462-6465 4 p.

Research output: Contribution to journalArticle

Photobleaching
Coloring Agents
Fluorescence Resonance Energy Transfer
Fluorescent Dyes
Single Nucleotide Polymorphism
Insect Proteins
flavone
Cytochrome P-450 Enzyme System
Pheromones
Diazinon

The cell lineage of the polyplacophoran, Chaetopleura apiculata: Variation in the spiralian program and implications for molluscan evolution

Henry, J. J., Okusu, A. & Martindale, M. Q., Aug 1 2004, In : Developmental Biology. 272, 1, p. 145-160 16 p.

Research output: Contribution to journalArticle

Cell Lineage
Polyplacophora
Mollusca
Larva
Cephalopoda