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2005

Interhead distance measurements in myosin VI via SHRImP support a simplified hand-over-hand model

Balci, H., Ha, T., Sweeney, H. L. & Selvin, P. R., Jul 2005, In : Biophysical journal. 89, 1, p. 413-417 5 p.

Research output: Contribution to journalArticle

In vivo HP1 targeting causes large-scale chromatin condensation and enhanced histone lysine methylation

Verschure, P. J., Van Der Kraan, I., De Leeuw, W., Van Der Vlag, J., Carpenter, A. E., Belmont, A. S. & Van Driel, R., Jun 2005, In : Molecular and cellular biology. 25, 11, p. 4552-4564 13 p.

Research output: Contribution to journalArticle

Mammalian target of rapamycin (mTOR) signaling is required for a late-stage fusion process during skeletal myotube maturation

Park, I. H. & Chen, J., Sep 9 2005, In : Journal of Biological Chemistry. 280, 36, p. 32009-32017 9 p.

Research output: Contribution to journalArticle

Modified nodal integral method for the three-dimensional, time-dependent, incompressible Navier-Stokes equations

Wang, F. & Rizwan-Uddin, Jan 2005, In : Nuclear Science and Engineering. 149, 1, p. 107-114 8 p.

Research output: Contribution to journalArticle

Molecular motors one at a time: FIONA to the rescue

Kural, C., Balci, H. & Selvin, P. R., Nov 30 2005, In : Journal of Physics Condensed Matter. 17, 47, p. S3979-S3995

Research output: Contribution to journalArticle

Mulan: Multiple-sequence local alignment and visualization for studying function and evolution

Ovcharenko, I., Loots, G. G., Giardine, B. M., Hou, M., Ma, J., Hardison, R. C., Stubbs, L. & Miller, W., Jan 2005, In : Genome Research. 15, 1, p. 184-194 11 p.

Research output: Contribution to journalArticle

Neural and eye-specific defects associated with loss of the Imitation Switch (ISWI) chromatin remodeler in Xenopus laevis

Dirscherl, S. S., Henry, J. J. & Krebs, J. E., Nov 1 2005, In : Mechanisms of Development. 122, 11, p. 1157-1170 14 p.

Research output: Contribution to journalArticle

Neutrophil microtubules suppress polarity and enhance directional migration

Xu, J., Wang, F., Van Keymeulen, A., Rentel, M. & Bourne, H. R., May 10 2005, In : Proceedings of the National Academy of Sciences of the United States of America. 102, 19, p. 6884-6889 6 p.

Research output: Contribution to journalArticle

New light on an old paradox: Site-dependent effects of carbachol on circadian rhythms

Buchanan, G. F. & Gillette, M. U., Jun 2005, In : Experimental Neurology. 193, 2, p. 489-496 8 p.

Research output: Contribution to journalArticle

Oligodeoxynucleotide methods for analyzing the circadian clock in the suprachiasmatic nucleus

Tischkau, S. A. & Gillette, M. U., Jan 1 2005, In : Methods in enzymology. 393, p. 593-610 18 p., 31.

Research output: Contribution to journalArticle

Regulating gene expression through RNA nuclear retention

Prasanth, K. V., Prasanth, S. G., Xuan, Z., Hearn, S., Freier, S. M., Bennett, C. F., Zhang, M. Q. & Spector, D. L., Oct 21 2005, In : Cell. 123, 2, p. 249-263 15 p.

Research output: Contribution to journalArticle

Regulation of an insect cytochrome P450 monooxygenase gene (CYP6B1) by aryl hydrocarbon and xanthotoxin response cascades

Brown, R. P., McDonnell, C. M., Berenbaum, M. R. & Schuler, M. A., Sep 26 2005, In : Gene. 358, 1-2, p. 39-52 14 p.

Research output: Contribution to journalArticle

Skeletal myocyte hypertrophy requires mTOR kinase activity and S6K1

Park, I. H., Erbay, E., Nuzzi, P. & Chen, J., Sep 10 2005, In : Experimental Cell Research. 309, 1, p. 211-219 9 p.

Research output: Contribution to journalArticle

Small vertical movement of a K+ channel voltage sensor measured with luminescence energy transfer

Posson, D. J., Ge, P., Miller, C., Bezanilla, F. & Selvin, P. R., Aug 11 2005, In : Nature. 436, 7052, p. 848-851 4 p.

Research output: Contribution to journalArticle

Step-size is determined by neck length in myosin V

Sakamoto, T., Yildez, A., Selvin, P. R. & Sellers, J. R., Dec 13 2005, In : Biochemistry. 44, 49, p. 16203-16210 8 p.

Research output: Contribution to journalArticle

Two reciprocal translocations provide new clues to the high mutability of the Grid2 locus

Robinson, K. O., Petersen, A. M., Morrison, S. N., Elso, C. M. & Stubbs, L., Jan 1 2005, In : Mammalian Genome. 16, 1, p. 32-40 9 p.

Research output: Contribution to journalArticle

Variations in CYP74B2 (Hydroperoxide Lyase) gene expression differentially affect hexenal signaling in the Columbia and Landsberg erecta ecotypes of arabidopsis

Duan, H., Huang, M. Y., Palacio, K. & Schuler, M. A., Dec 1 2005, In : Plant physiology. 139, 3, p. 1529-1544 16 p.

Research output: Contribution to journalArticle

2006

Accessions of Solanum tuberosum ssp. andigena show differences in photosynthetic recovery after drought stress as reflected in gene expression profiles

Watkinson, J. I., Hendricks, L., Sioson, A. A., Vasquez-Robinet, C., Stromberg, V., Heath, L. S., Schuler, M., Bohnert, H. J., Bonierbale, M. & Grene, R., Dec 1 2006, In : Plant Science. 171, 6, p. 745-758 14 p.

Research output: Contribution to journalArticle

A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

Huntley, S., Baggott, D. M., Hamilton, A. T., Tran-Gyamfi, M., Yang, S., Kim, J., Gordon, L., Branscomb, E. & Stubbs, L., May 2006, In : Genome Research. 16, 5, p. 669-677 9 p.

Research output: Contribution to journalArticle

Adaptability of myosin V studied by simultaneous detection of position and orientation

Syed, S., Snyder, G. E., Franzini-Armstrong, C., Selvin, P. R. & Goldman, Y. E., May 3 2006, In : EMBO Journal. 25, 9, p. 1795-1803 9 p.

Research output: Contribution to journalArticle

A deficit of detoxification enzymes: Pesticide sensitivity and environmental response in the honeybee

Claudianos, C., Ranson, H., Johnson, R. M., Biswas, S., Schuler, M. A., Berenbaum, M. R., Feyereisen, R. & Oakeshott, J. G., Oct 1 2006, In : Insect Molecular Biology. 15, 5, p. 615-636 22 p.

Research output: Contribution to journalArticle

Allele-specific deposition of macroH2A1 in imprinting control regions

Choo, J. H., Kim, J. D., Chung, J. H., Stubbs, L. & Kim, J., Mar 1 2006, In : Human molecular genetics. 15, 5, p. 717-724 8 p.

Research output: Contribution to journalArticle

A nuclear transport signal in mammalian target of rapamycin is critical for its cytoplasmic signaling to S6 kinase

Bachmann, R. A., Kim, J. H., Wu, A. L., Park, I. H. & Chen, J., Mar 17 2006, In : Journal of Biological Chemistry. 281, 11, p. 7357-7363 7 p.

Research output: Contribution to journalArticle

Cell specification and the role of the polar lobe in the gastropod mollusc Crepidula fornicata

Henry, J. Q., Perry, K. J. & Martindale, M. Q., Sep 15 2006, In : Developmental Biology. 297, 2, p. 295-307 13 p.

Research output: Contribution to journalArticle

Class-dependent sequence alignment strategy improves the structural and functional modeling of P450s

Baudry, J., Rupasinghe, S. & Schuler, M. A., Aug 1 2006, In : Protein Engineering, Design and Selection. 19, 8, p. 345-353 9 p.

Research output: Contribution to journalArticle

Comprehensive phosphoprotein analysis of linker histone H1 from tetrahymena thermophila

Garcia, B. A., Joshi, S., Thomas, C. E., Chitta, R. K., Diaz, R. L., Busby, S. A., Andrews, P. C., Ogorzalek Loo, R. R., Shabanowitz, J., Kelleher, N. L., Mizzen, C. A., Allis, C. D. & Hunt, D. F., Sep 1 2006, In : Molecular and Cellular Proteomics. 5, 9, p. 1593-1609 17 p.

Research output: Contribution to journalArticle

CYP6B1 and CYP6B3 of the black swallowtail (Papilio polyxenes): Adaptive evolution through subfunctionalization

Wen, Z., Rupasinghe, S., Niu, G., Berenbaum, M. R. & Schuler, M. A., Dec 1 2006, In : Molecular biology and evolution. 23, 12, p. 2434-2443 10 p.

Research output: Contribution to journalArticle

Defocused orientation and position imaging (DOPI) of myosin V

Toprak, E., Enderlein, J., Syed, S., McKinney, S. A., Petschek, R. G., Ha, T., Goldman, Y. E. & Selvin, P. R., Apr 25 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 17, p. 6495-6499 5 p.

Research output: Contribution to journalArticle

Distance measurements reveal a common topology of prokaryotic voltage-gated ion channels in the lipid bilayer

Richardson, J., Blunck, R., Ge, P., Selvin, P. R., Bezanilla, F., Papazian, D. M. & Correa, A. M., Oct 24 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 43, p. 15865-15870 6 p.

Research output: Contribution to journalArticle

Electrical signals control wound healing through phosphatidylinositol-3-OH kinase-γ and PTEN

Zhao, M., Song, B., Pu, J., Wada, T., Reid, B., Tai, G., Wang, F., Guo, A., Walczysko, P., Gu, Y., Sasaki, T., Suzuki, A., Forrester, J. V., Bourne, H. R., Devreotes, P. N., McCaig, C. D. & Penninger, J. M., Jul 27 2006, In : Nature. 442, 7101, p. 457-460 4 p.

Research output: Contribution to journalArticle

Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes

Hamilton, A. T., Huntley, S., Tran-Gyamfi, M., Baggott, D. M., Gordon, L. & Stubbs, L., May 1 2006, In : Genome Research. 16, 5, p. 584-594 11 p.

Research output: Contribution to journalArticle

Extracting dwell time sequences from processive molecular motor data

Milescu, L. S., Yildiz, A., Selvin, P. R. & Sachs, F., Nov 2006, In : Biophysical journal. 91, 9, p. 3135-3150 16 p.

Research output: Contribution to journalArticle

Full-length myosin VI dimerizes and moves processively along actin filaments upon monomer clustering

Park, H., Ramamurthy, B., Travaglia, M., Safer, D., Chen, L. Q., Franzini-Armstrong, C., Selvin, P. R. & Sweeney, H. L., Feb 3 2006, In : Molecular cell. 21, 3, p. 331-336 6 p.

Research output: Contribution to journalArticle

Functional CpG methylation system in a social insect

Wang, Y., Jorda, M., Jones, P. L., Maleszka, R., Ling, X., Robertson, H. M., Mizzen, C. A., Peinado, M. A. & Robinson, G. E., Oct 27 2006, In : Science. 314, 5799, p. 645-647 3 p.

Research output: Contribution to journalArticle

Gene-specific characterization of human histone H2B by electron capture dissociation

Siuti, N., Roth, M. J., Mizzen, C. A., Kelleher, N. L. & Pesavento, J. J., Feb 1 2006, In : Journal of Proteome Research. 5, 2, p. 233-239 7 p.

Research output: Contribution to journalArticle

Identification and characterization of the methyl arginines in the fragile X mental retardation protein Fmrp

Stetler, A., Winograd, C., Sayegh, J., Cheever, A., Patton, E., Zhang, X., Clarke, S. & Ceman, S., Jan 1 2006, In : Human molecular genetics. 15, 1, p. 87-96 10 p.

Research output: Contribution to journalArticle

Identification of clustered YY1 binding sites in imprinting control regions

Kim, J. D., Hinz, A. K., Bergmann, A., Huang, J. M., Ovcharenko, I., Stubbs, L. & Kim, J., Jul 10 2006, In : Genome Research. 16, 7, p. 901-911 11 p.

Research output: Contribution to journalArticle

Insights into social insects from the genome of the honeybee Apis mellifera

Weinstock, G. M., Robinson, G. E., Gibbs, R. A., Worley, K. C., Evans, J. D., Maleszka, R., Robertson, H. M., Weaver, D. B., Beye, M., Bork, P., Elsik, C. G., Hartfelder, K., Hunt, G. J., Zdobnov, E. M., Amdam, G. V., Bitondi, M. M. G., Collins, A. M., Cristino, A. S., Lattorff, H. M. G., Lobo, C. H. & 204 others, Moritz, R. F. A., Nunes, F. M. F., Page, R. E., Simões, Z. L. P., Wheeler, D., Carninci, P., Fukuda, S., Hayashizaki, Y., Kai, C., Kawai, J., Sakazume, N., Sasaki, D., Tagami, M., Albert, S., Baggerman, G., Beggs, K. T., Bloch, G., Cazzamali, G., Cohen, M., Drapeau, M. D., Eisenhardt, D., Emore, C., Ewing, M. A., Fahrbach, S. E., Forêt, S., Grimmelikhuijzen, C. J. P., Hauser, F., Hummon, A. B., Huybrechts, J., Jones, A. K., Kadowaki, T., Kaplan, N., Kucharski, R., Leboulle, G., Linial, M., Littleton, J. T., Mercer, A. R., Richmond, T. A., Rodriguez-Zas, S. L., Rubin, E. B., Sattelle, D. B., Schlipalius, D., Schoofs, L., Shemesh, Y., Sweedler, J. V., Velarde, R., Verleyen, P., Vierstraete, E., Williamson, M. R., Ament, S. A., Brown, S. J., Corona, M., Dearden, P. K., Dunn, W. A., Elekonich, M. M., Fujiyuki, T., Gattermeier, I., Gempe, T., Hasselmann, M., Kage, E., Kamikouchi, A., Kubo, T., Kunieda, T., Lorenzen, M., Milshina, N. V., Morioka, M., Ohashi, K., Overbeek, R., Ross, C. A., Schioett, M., Shippy, T., Takeuchi, H., Toth, A. L., Willis, J. H., Wilson, M. J., Gordon, K. H. J., Letunic, I., Hackett, K., Peterson, J., Felsenfeld, A., Guyer, M., Solignac, M., Agarwala, R., Cornuet, J. M., Monnerot, M., Mougel, F., Reese, J. T., Vautrin, D., Gillespie, J. J., Cannone, J. J., Gutell, R. R., Johnston, J. S., Eisen, M. B., Iyer, V. N., Iyer, V., Kosarev, P., Mackey, A. J., Solovyev, V., Souvorov, A., Aronstein, K. A., Bilikova, K., Chen, Y. P., Clark, A. G., Decanini, L. I., Gelbart, W. M., Hetru, C., Hultmark, D., Imler, J. L., Jiang, H., Kanost, M., Kimura, K., Lazzaro, B. P., Lopez, D. L., Simuth, J., Thompson, G. J., Zou, Z., De Jong, P., Sodergren, E., Csurös, M., Milosavljevic, A., Osoegawa, K., Richards, S., Shu, C. L., Duret, L., Elhaik, E., Graur, D., Anzola, J. M., Campbell, K. S., Childs, K. L., Collinge, D., Crosby, M. A., Dickens, C. M., Grametes, L. S., Grozinger, C. M., Jones, P. L., Jorda, M., Ling, X., Matthews, B. B., Miller, J., Mizzen, C., Peinado, M. A., Reid, J. G., Russo, S. M., Schroeder, A. J., St. Pierre, S. E., Wang, Y., Zhou, P., Jiang, H., Kitts, P., Ruef, B., Venkatraman, A., Zhang, L., Aquino-Perez, G., Whitfield, C. W., Behura, S. K., Berlocher, S. H., Sheppard, W. S., Smith, D. R., Suarez, A. V., Tsutsui, N. D., Wei, X., Wheeler, D., Havlak, P., Li, B., Liu, Y., Jovilet, A., Lee, S., Nazareth, L. V., Pu, L. L., Thorn, R., Stolc, V., Newman, T., Samanta, M., Tongprasit, W. A., Claudianos, C., Berenbaum, M. R., Biswas, S., De Graaf, D. C., Feyereisen, R., Johnson, R. M., Oakeshott, J. G., Ranson, H., Schuler, M. A., Muzny, D., Chacko, J., Davis, C., Dinh, H., Gill, R., Hernandez, J., Hines, S., Hume, J., Jackson, L. R., Kovar, C., Lewis, L., Miner, G., Morgan, M., Nguyen, N., Okwuonu, G., Paul, H., Santibanez, J., Savery, G., Svatek, A., Villasana, D. & Wright, R., Oct 26 2006, In : Nature. 443, 7114, p. 931-949 19 p.

Research output: Contribution to journalArticle

Isolation and characterization of a novel gene, xMADML, involved in Xenopus laevis eye development

Elkins, M. B. & Henry, J. J., Jul 1 2006, In : Developmental Dynamics. 235, 7, p. 1845-1857 13 p.

Research output: Contribution to journalArticle

Long-Range Directional Movement of an Interphase Chromosome Site

Chuang, C. H., Carpenter, A. E., Fuchsova, B., Johnson, T., de Lanerolle, P. & Belmont, A. S., Apr 18 2006, In : Current Biology. 16, 8, p. 825-831 7 p.

Research output: Contribution to journalArticle

Mass spectrometric characterization of human histone H3: A bird's eye view

Thomas, C. E., Kelleher, N. L. & Mizzen, C. A., Feb 1 2006, In : Journal of Proteome Research. 5, 2, p. 240-247 8 p.

Research output: Contribution to journalArticle

Maximum likelihood estimation of molecular motor kinetics from staircase dwell-time sequences

Milescu, L. S., Yildiz, A., Selvin, P. R. & Sachs, F., Jan 1 2006, In : Biophysical journal. 91, 4, p. 1156-1168 13 p.

Research output: Contribution to journalArticle

Mediation of pyrethroid insecticide toxicity to honey bees (Hymenoptera: Apidae) by cytochrome P450 monooxygenases

Johnson, R. M., Wen, Z., Schuler, M. A. & Berenbaum, M. R., Aug 2006, In : Journal of economic entomology. 99, 4, p. 1046-1050 5 p.

Research output: Contribution to journalArticle

Modifications of H3 and H4 during chromatin replication, nucleosome assembly, and histone exchange

Benson, L. J., Gu, Y., Yakovleva, T., Tong, K., Barrows, C., Strack, C. L., Cook, R. G., Mizzen, C. A. & Annunziato, A. T., Apr 7 2006, In : Journal of Biological Chemistry. 281, 14, p. 9287-9296 10 p.

Research output: Contribution to journalArticle

Neuronal leucine-rich repeat 6 (XlNLRR-6) is required for late lens and retina development in Xenopus laevis

Wolfe, A. D. & Henry, J. J., Apr 1 2006, In : Developmental Dynamics. 235, 4, p. 1027-1041 15 p.

Research output: Contribution to journalArticle

PIAS1 confers DNA-binding specificity on the Msx1 homeoprotein

Lee, H., Quinn, J. C., Prasanth, K. V., Swiss, V. A., Economides, K. D., Camacho, M. M., Spector, D. L. & Abate-Shen, C., Apr 1 2006, In : Genes and Development. 20, 7, p. 784-794 11 p.

Research output: Contribution to journalArticle

Polarization effect on position accuracy of fluorophore localization

Enderlein, J., Toprak, E. & Selvin, P. R., Jan 1 2006, In : Optics Express. 14, 18, p. 8111-8120 10 p.

Research output: Contribution to journalArticle

Precise characterization of human histones in the H2A gene family by top down mass spectrometry

Boyne, M. T., Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Feb 1 2006, In : Journal of Proteome Research. 5, 2, p. 248-253 6 p.

Research output: Contribution to journalArticle