Research Output

Filter
Article

Improved hidden Markov models for molecular motors, part 2: Extensions and application to experimental data

Syed, S., Müllner, F. E., Selvin, P. R. & Sigworth, F. J., Dec 1 2010, In : Biophysical journal. 99, 11, p. 3696-3703 8 p.

Research output: Contribution to journalArticle

Induction of antiidiotypic antibodies to donor HLA-A2 following blood transfusions in a highly sensitized HLA-A2+ recipient

Burlingham, W. J., Pan, M. H., Mason, B., Ceman, S. & Sollinger, H. W., Jun 1988, In : Transplantation. 45, 6, p. 1066-1071 6 p.

Research output: Contribution to journalArticle

Induction of a secondary body axis in Xenopus by antibodies to β-catenin

McCrea, P. D., Brieher, W. M. & Gumbiner, B. M., Oct 1993, In : Journal of Cell Biology. 123, 2, p. 477-484 8 p.

Research output: Contribution to journalArticle

Induction of cytochrome P450-mediated detoxification of xanthotoxin in the black swallowtail

Cohen, M. B., Berenbaum, M. R. & Schuler, M. A., Sep 1 1989, In : Journal of Chemical Ecology. 15, 9, p. 2347-2355 9 p.

Research output: Contribution to journalArticle

Inductive interactions and embryonic equivalence groups in a basal metazoan, the ctenophore Mnemiopsis leidyi

Henry, J. Q. & Martindale, M. Q., Jan 1 2004, In : Evolution and Development. 6, 1, p. 17-24 8 p.

Research output: Contribution to journalArticle

Inductive processes leading to inner ear formation during Xenopus development

Gallagher, B. C., Henry, J. J. & Grainger, R. M., Apr 10 1996, In : Developmental Biology. 175, 1, p. 95-107 13 p.

Research output: Contribution to journalArticle

Inhibitory cell-cell interactions control development in the embryos of Cerebratulus lacteus.

Henry, J. J. & Martindale, M. Q., Oct 1994, In : The Biological bulletin. 187, 2, p. 238-239 2 p.

Research output: Contribution to journalArticle

Ins and outs of spiralian gastrulation

Lyons, D. C. & Henry, J. Q., 2014, In : International Journal of Developmental Biology. 58, 6-8, p. 413-428 16 p.

Research output: Contribution to journalArticle

Insights into interphase large-scale chromatin structure from analysis of engineered chromosome regions

Belmont, A. S., Hu, Y., Sinclair, P. B., Wu, W., Bian, Q. & Kireev, I., 2010, In : Cold Spring Harbor symposia on quantitative biology. 75, p. 453-460 8 p.

Research output: Contribution to journalArticle

Insights into social insects from the genome of the honeybee Apis mellifera

Weinstock, G. M., Robinson, G. E., Gibbs, R. A., Worley, K. C., Evans, J. D., Maleszka, R., Robertson, H. M., Weaver, D. B., Beye, M., Bork, P., Elsik, C. G., Hartfelder, K., Hunt, G. J., Zdobnov, E. M., Amdam, G. V., Bitondi, M. M. G., Collins, A. M., Cristino, A. S., Lattorff, H. M. G., Lobo, C. H. & 204 others, Moritz, R. F. A., Nunes, F. M. F., Page, R. E., Simões, Z. L. P., Wheeler, D., Carninci, P., Fukuda, S., Hayashizaki, Y., Kai, C., Kawai, J., Sakazume, N., Sasaki, D., Tagami, M., Albert, S., Baggerman, G., Beggs, K. T., Bloch, G., Cazzamali, G., Cohen, M., Drapeau, M. D., Eisenhardt, D., Emore, C., Ewing, M. A., Fahrbach, S. E., Forêt, S., Grimmelikhuijzen, C. J. P., Hauser, F., Hummon, A. B., Huybrechts, J., Jones, A. K., Kadowaki, T., Kaplan, N., Kucharski, R., Leboulle, G., Linial, M., Littleton, J. T., Mercer, A. R., Richmond, T. A., Rodriguez-Zas, S. L., Rubin, E. B., Sattelle, D. B., Schlipalius, D., Schoofs, L., Shemesh, Y., Sweedler, J. V., Velarde, R., Verleyen, P., Vierstraete, E., Williamson, M. R., Ament, S. A., Brown, S. J., Corona, M., Dearden, P. K., Dunn, W. A., Elekonich, M. M., Fujiyuki, T., Gattermeier, I., Gempe, T., Hasselmann, M., Kage, E., Kamikouchi, A., Kubo, T., Kunieda, T., Lorenzen, M., Milshina, N. V., Morioka, M., Ohashi, K., Overbeek, R., Ross, C. A., Schioett, M., Shippy, T., Takeuchi, H., Toth, A. L., Willis, J. H., Wilson, M. J., Gordon, K. H. J., Letunic, I., Hackett, K., Peterson, J., Felsenfeld, A., Guyer, M., Solignac, M., Agarwala, R., Cornuet, J. M., Monnerot, M., Mougel, F., Reese, J. T., Vautrin, D., Gillespie, J. J., Cannone, J. J., Gutell, R. R., Johnston, J. S., Eisen, M. B., Iyer, V. N., Iyer, V., Kosarev, P., Mackey, A. J., Solovyev, V., Souvorov, A., Aronstein, K. A., Bilikova, K., Chen, Y. P., Clark, A. G., Decanini, L. I., Gelbart, W. M., Hetru, C., Hultmark, D., Imler, J. L., Jiang, H., Kanost, M., Kimura, K., Lazzaro, B. P., Lopez, D. L., Simuth, J., Thompson, G. J., Zou, Z., De Jong, P., Sodergren, E., Csurös, M., Milosavljevic, A., Osoegawa, K., Richards, S., Shu, C. L., Duret, L., Elhaik, E., Graur, D., Anzola, J. M., Campbell, K. S., Childs, K. L., Collinge, D., Crosby, M. A., Dickens, C. M., Grametes, L. S., Grozinger, C. M., Jones, P. L., Jorda, M., Ling, X., Matthews, B. B., Miller, J., Mizzen, C., Peinado, M. A., Reid, J. G., Russo, S. M., Schroeder, A. J., St. Pierre, S. E., Wang, Y., Zhou, P., Jiang, H., Kitts, P., Ruef, B., Venkatraman, A., Zhang, L., Aquino-Perez, G., Whitfield, C. W., Behura, S. K., Berlocher, S. H., Sheppard, W. S., Smith, D. R., Suarez, A. V., Tsutsui, N. D., Wei, X., Wheeler, D., Havlak, P., Li, B., Liu, Y., Jovilet, A., Lee, S., Nazareth, L. V., Pu, L. L., Thorn, R., Stolc, V., Newman, T., Samanta, M., Tongprasit, W. A., Claudianos, C., Berenbaum, M. R., Biswas, S., De Graaf, D. C., Feyereisen, R., Johnson, R. M., Oakeshott, J. G., Ranson, H., Schuler, M. A., Muzny, D., Chacko, J., Davis, C., Dinh, H., Gill, R., Hernandez, J., Hines, S., Hume, J., Jackson, L. R., Kovar, C., Lewis, L., Miner, G., Morgan, M., Nguyen, N., Okwuonu, G., Paul, H., Santibanez, J., Savery, G., Svatek, A., Villasana, D. & Wright, R., Oct 26 2006, In : Nature. 443, 7114, p. 931-949 19 p.

Research output: Contribution to journalArticle

Integrated biochemical and mechanical signals regulate multifaceted human embryonic stem cell functions

Li, D., Zhou, J., Wang, L., Shin, M. E., Su, P., Lei, X., Kuang, H., Guo, W., Yang, H., Cheng, L., Tanaka, T. S., Leckband, D. E., Reynolds, A. B., Duan, E. & Wang, F., Nov 1 2010, In : Journal of Cell Biology. 191, 3, p. 631-644 14 p.

Research output: Contribution to journalArticle

Integration of temporal and spatial patterning generates neural diversity

Erclik, T., Li, X., Courgeon, M., Bertet, C., Chen, Z., Baumert, R., Ng, J., Koo, C., Arain, U., Behnia, R., Del Valle Rodriguez, A., Senderowicz, L., Negre, N., White, K. P. & Desplan, C., Jan 19 2017, In : Nature. 541, 7637, p. 365-370 6 p.

Research output: Contribution to journalArticle

Interactions across Exons Can Influence Splice Site Recognition in Plant Nuclei

McCullough, A. J., Baynton, C. E. & Schuler, M. A., Dec 1996, In : Plant Cell. 8, 12, p. 2295-2307 13 p.

Research output: Contribution to journalArticle

Open Access

Interhead distance measurements in myosin VI via SHRImP support a simplified hand-over-hand model

Balci, H., Ha, T., Sweeney, H. L. & Selvin, P. R., Jul 2005, In : Biophysical journal. 89, 1, p. 413-417 5 p.

Research output: Contribution to journalArticle

Internal AU-rich elements modulate activity of two competing 3' splice sites in plant nuclei

Merritt, H., McCullough, A. J. & Schuler, M. A., 1997, In : Plant Journal. 12, 4, p. 937-943 7 p.

Research output: Contribution to journalArticle

Interphase chromosomes undergo constrained diffusional motion in living cells

Marshall, W. F., Straight, A., Marko, J. F., Swedlow, J., Dernburg, A., Belmont, A., Murray, A. W., Agard, D. A. & Sedat, J. W., Dec 1 1997, In : Current Biology. 7, 12, p. 930-939 10 p.

Research output: Contribution to journalArticle

Interphase H1 phosphorylation: Regulation and functions in chromatin

Liao, R. & Mizzen, C. A., Mar 1 2016, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1859, 3, p. 476-485 10 p.

Research output: Contribution to journalArticle

Interphase movements of a DNA chromosome region modulated by VP16 transcriptional activator

Tumbar, T. & Belmont, A. S., Feb 15 2001, In : Nature Cell Biology. 3, 2, p. 134-139 6 p.

Research output: Contribution to journalArticle

Interpreting top-down mass spectra using spectral alignment

Frank, A. M., Pesavento, J. J., Mizzen, C. A., Kelleher, N. L. & Pevzner, P. A., Apr 1 2008, In : Analytical chemistry. 80, 7, p. 2499-2505 7 p.

Research output: Contribution to journalArticle

Intronic and exonic sequences modulate 5′ splice site selection in plant nuclei

McCullough, A. J. & Schuler, M. A., Sep 25 1996, In : Nucleic acids research. 25, 5, p. 1071-1077 7 p.

Research output: Contribution to journalArticle

Invariant chain peptides in most HLA-DR molecules of an antigen-processing mutant

Sette, A., Ceman, S., Kubo, R. T., Sakaguchi, K., Appella, E., Hunt, D. F., Davis, T. A., Michel, H., Shabanowitz, J., Rudersdorf, R., Grey, H. M. & DeMars, R., 1992, In : Science. 258, 5089, p. 1801-1804 4 p.

Research output: Contribution to journalArticle

In vivo analysis of plant pre-mRNA splicing using an autonomously replicating vector

Mccullough, A. J., Lou, H. & Schuler, M. A., Jun 11 1991, In : Nucleic acids research. 19, 11, p. 3001-3009 9 p.

Research output: Contribution to journalArticle

In vivo HP1 targeting causes large-scale chromatin condensation and enhanced histone lysine methylation

Verschure, P. J., Van Der Kraan, I., De Leeuw, W., Van Der Vlag, J., Carpenter, A. E., Belmont, A. S. & Van Driel, R., Jun 2005, In : Molecular and cellular biology. 25, 11, p. 4552-4564 13 p.

Research output: Contribution to journalArticle

In vivo immunogold labeling confirms large-scale chromatin folding motifs

Kireev, I., Lakonishok, M., Liu, W., Joshi, V. N., Powell, R. & Belmont, A. S., Apr 1 2008, In : Nature Methods. 5, 4, p. 311-313 3 p.

Research output: Contribution to journalArticle

In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition

Robinett, C. C., Straight, A., Li, G., Willhelm, C., Sudlow, G., Murray, A. & Belmont, A. S., 1996, In : Journal of Cell Biology. 135, 6 II, p. 1685-1700 16 p.

Research output: Contribution to journalArticle

In vivo optical trapping indicates kinesin's stall force is reduced by dynein during intracellular transport

Blehm, B. H., Schroer, T. A., Trybus, K. M., Chemla, Y. R. & Selvin, P. R., Feb 26 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3381-3386 6 p.

Research output: Contribution to journalArticle

In vivo visualization of chromosomes using lac operator-repressor binding

Belmont, A. S. & Straight, A. F., Mar 1998, In : Trends in Cell Biology. 8, 3, p. 121-124 4 p.

Research output: Contribution to journalArticle

Isolation and characterization of a novel gene, xMADML, involved in Xenopus laevis eye development

Elkins, M. B. & Henry, J. J., Jul 1 2006, In : Developmental Dynamics. 235, 7, p. 1845-1857 13 p.

Research output: Contribution to journalArticle

Isolation and characterization of in vivo modified histones and an activity gel assay for identification of histone acetyltransferases

Wiley, E. A., Mizzen, C. A. & Allis, C. D., 2000, In : Methods in Cell Biology. 62, p. 379-394 16 p.

Research output: Contribution to journalArticle

Isolation and identification of brain tumor stem cells from human brain neuroepithelial tumors

Fang, J. S., Deng, Y. W., Li, M. C., Chen, F. H., Wang, Y. J., Lu, M., Fang, F., Wu, J., Yang, Z. Y., Zhou, X. Y., Wang, F. & Chen, C., Jan 30 2007, In : National Medical Journal of China. 87, 5, p. 298-303 6 p.

Research output: Contribution to journalArticle

Jasmonate and salicylate induce expression of herbivore cytochrome P450 genes

Li, X., Schuler, M. A. & Berenbaum, M. R., Oct 17 2002, In : Nature. 419, 6908, p. 712-715 4 p.

Research output: Contribution to journalArticle

Jones phase microscopy of transparent and anisotropic samples

Wang, Z., Millet, L. J., Gillette, M. U. & Popescu, G., Jun 1 2008, In : Optics Letters. 33, 11, p. 1270-1272 3 p.

Research output: Contribution to journalArticle

Kinesin Walks Hand-Over-Hand

Yildiz, A., Tomishige, M., Vale, R. D. & Selvin, P. R., Jan 30 2004, In : Science. 303, 5658, p. 676-678 3 p.

Research output: Contribution to journalArticle

Knockdown of nuclear-retained long noncoding RNAs using modified DNA antisense oligonucleotides

Zong, X., Huang, L., Tripathi, V., Peralta, R., Freier, S. M., Guo, S. & Prasanth, K. V., 2015, In : Methods in Molecular Biology. 1262, p. 321-331 11 p.

Research output: Contribution to journalArticle

Label-Free Characterization of Emerging Human Neuronal Networks

Mir, M., Kim, T., Majumder, A., Xiang, M., Wang, R., Liu, S. C., Gillette, M. U., Stice, S. & Popescu, G., Apr 1 2014, In : Scientific reports. 4, 4434.

Research output: Contribution to journalArticle

Label-Free Imaging of Single Microtubule Dynamics Using Spatial Light Interference Microscopy

Kandel, M. E., Teng, K. W., Selvin, P. R. & Popescu, G., Jan 24 2017, In : ACS Nano. 11, 1, p. 647-655 9 p.

Research output: Contribution to journalArticle

Label-free intracellular transport measured by spatial light interference microscopy

Wang, Z., Millet, L., Chan, V., Ding, H., Gillette, M. U., Bashir, R. & Popescu, G., Feb 2011, In : Journal of biomedical optics. 16, 2, 026019.

Research output: Contribution to journalArticle

Labeling proteins inside living cells using external fluorophores for microscopy

Teng, K. W., Ishitsuka, Y., Ren, P., Youn, Y., Deng, X., Ge, P., Belmont, A. S. & Selvin, P. R., Dec 9 2016, In : eLife. 5, DECEMBER2016, e20378.

Research output: Contribution to journalArticle

Lack of muscle mTOR kinase activity causes early onset myopathy and compromises whole-body homeostasis

Zhang, Q., Duplany, A., Moncollin, V., Mouradian, S., Goillot, E., Mazelin, L., Gauthier, K., Streichenberger, N., Angleraux, C., Chen, J., Ding, S., Schaeffer, L. & Gangloff, Y. G., Feb 2019, In : Journal of Cachexia, Sarcopenia and Muscle. 10, 1, p. 35-53 19 p.

Research output: Contribution to journalArticle

Lamin B distribution and association with peripheral chromatin revealed by optical sectioning and electron microscopy tomography

Belmont, A. S., Zhai, Y. & Thilenius, A., 1993, In : Journal of Cell Biology. 123, 6 II, p. 1671-1685 15 p.

Research output: Contribution to journalArticle

Open Access

LanCL proteins are not Involved in Lanthionine Synthesis in Mammals

He, C., Zeng, M., Dutta, D., Koh, T. H., Chen, J. & Van Der Donk, W. A., Jan 20 2017, In : Scientific reports. 7, 40980.

Research output: Contribution to journalArticle

Lanthanide-based resonance energy transfer

Selvin, P. R., Dec 1 1996, In : IEEE Journal on Selected Topics in Quantum Electronics. 2, 4, p. 1077-1087 11 p.

Research output: Contribution to journalArticle

Lanthionine synthetase C-like protein 2 (LanCL2) is a novel regulator of Akt

Zeng, M., Van Der Donk, W. A. & Chen, J., Dec 1 2014, In : Molecular biology of the cell. 25, 24, p. 3954-3961 8 p.

Research output: Contribution to journalArticle

Lanthionine synthetase C-like protein 2 (LanCL2) is important for adipogenic differentiation

Dutta, D., Lai, K. Y., Reyes-Ordoñez, A., Chen, J. & van der Donk, W. A., Jan 1 2018, In : Journal of Lipid Research. 59, 8, p. 1433-1445 13 p.

Research output: Contribution to journalArticle