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2006

Mass spectrometric characterization of human histone H3: A bird's eye view

Thomas, C. E., Kelleher, N. L. & Mizzen, C. A., Feb 2006, In : Journal of Proteome Research. 5, 2, p. 240-247 8 p.

Research output: Contribution to journalArticle

Maximum likelihood estimation of molecular motor kinetics from staircase dwell-time sequences

Milescu, L. S., Yildiz, A., Selvin, P. R. & Sachs, F., 2006, In : Biophysical journal. 91, 4, p. 1156-1168 13 p.

Research output: Contribution to journalArticle

Mediation of pyrethroid insecticide toxicity to honey bees (Hymenoptera: Apidae) by cytochrome P450 monooxygenases

Johnson, R. M., Wen, Z., Schuler, M. A. & Berenbaum, M. R., Aug 2006, In : Journal of economic entomology. 99, 4, p. 1046-1050 5 p.

Research output: Contribution to journalArticle

Modifications of H3 and H4 during chromatin replication, nucleosome assembly, and histone exchange

Benson, L. J., Gu, Y., Yakovleva, T., Tong, K., Barrows, C., Strack, C. L., Cook, R. G., Mizzen, C. A. & Annunziato, A. T., Apr 7 2006, In : Journal of Biological Chemistry. 281, 14, p. 9287-9296 10 p.

Research output: Contribution to journalArticle

Neuronal leucine-rich repeat 6 (XlNLRR-6) is required for late lens and retina development in Xenopus laevis

Wolfe, A. D. & Henry, J. J., Apr 2006, In : Developmental Dynamics. 235, 4, p. 1027-1041 15 p.

Research output: Contribution to journalArticle

PIAS1 confers DNA-binding specificity on the Msx1 homeoprotein

Lee, H., Quinn, J. C., Prasanth, K. V., Swiss, V. A., Economides, K. D., Camacho, M. M., Spector, D. L. & Abate-Shen, C., Apr 1 2006, In : Genes and Development. 20, 7, p. 784-794 11 p.

Research output: Contribution to journalArticle

Polarization effect on position accuracy of fluorophore localization

Enderlein, J., Toprak, E. & Selvin, P. R., Jan 1 2006, In : Optics Express. 14, 18, p. 8111-8120 10 p.

Research output: Contribution to journalArticle

Precise characterization of human histones in the H2A gene family by top down mass spectrometry

Boyne, M. T., Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Feb 2006, In : Journal of Proteome Research. 5, 2, p. 248-253 6 p.

Research output: Contribution to journalArticle

Quantitative analysis of modified proteins and their positional isomers by tandem mass spectrometry: Human histone H4

Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Jul 1 2006, In : Analytical chemistry. 78, 13, p. 4271-4280 10 p.

Research output: Contribution to journalArticle

Rapid, diffusional shuttling of poly(A) RNA between nuclear speckles and the nucleoplasm

Politz, J. C. R., Tuft, R. A., Prasanth, K. V., Baudendistel, N., Fogarty, K. E., Lifshitz, L. M., Langowski, J., Spector, D. L. & Pederson, T., Mar 2006, In : Molecular biology of the cell. 17, 3, p. 1239-1249 11 p.

Research output: Contribution to journalArticle

Rapid actin monomer-insensitive depolymerization of Listeria actin comet tails by cofilin, coronin, and Aip1

Brieher, W. M., Hao, Y. K., Ballif, B. A. & Mitchison, T. J., Oct 23 2006, In : Journal of Cell Biology. 175, 2, p. 315-324 10 p.

Research output: Contribution to journalArticle

Remarkable substrate-specificity of CYP6AB3 in Depressaria pastinacella, a highly specialized caterpillar

Mao, W., Rupasinghe, S., Zangerl, A. R., Schuler, M. A. & Berenbaum, M. R., Apr 1 2006, In : Insect Molecular Biology. 15, 2, p. 169-179 11 p.

Research output: Contribution to journalArticle

The cytochrome P450 gene family CYP157 does not contain EXXR in the K-helix reducing the absolute conserved P450 residues to a single cysteine

Rupasinghe, S., Schuler, M. A., Kagawa, N., Yuan, H., Lei, L., Zhao, B., Kelly, S. L., Waterman, M. R. & Lamb, D. C., Nov 27 2006, In : FEBS Letters. 580, 27, p. 6338-6342 5 p.

Research output: Contribution to journalArticle

Toxicity of aflatoxin B1 to Helicoverpa zea and bioactivation by cytochrome P450 monooxygenases

Zeng, R. S. L., Niu, G., Wen, Z., Schuler, M. A. & Berenbaum, M. R., 2006, In : Journal of Chemical Ecology. 32, 7, p. 1459-1471 13 p.

Research output: Contribution to journalArticle

Truncated HP1 lacking a functional chromodomain induces heterochromatinization upon in vivo targeting

Brink, M. C., Van Der Velden, Y., De Leeuw, W., Mateos-Langerak, J., Belmont, A. S., Van Driel, R. & Verschure, P. J., Jan 1 2006, In : Histochemistry and Cell Biology. 125, 1-2, p. 53-61 9 p.

Research output: Contribution to journalArticle

2007

Allelochemical induction of cytochrome P450 monooxygenases and amelioration of xenobiotic toxicity in Helicoverpa zea

Zeng, R. S., Wen, Z., Niu, G., Schuler, M. A. & Berenbaum, M. R., Mar 1 2007, In : Journal of Chemical Ecology. 33, 3, p. 449-461 13 p.

Research output: Contribution to journalArticle

Bound attractant at the leading vs. the trailing edge determines chemotactic prowess

Herzmark, P., Campbell, K., Wang, F., Wong, K., El-Samad, H., Groisman, A. & Bourne, H. R., Aug 14 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 33, p. 13349-13354 6 p.

Research output: Contribution to journalArticle

Caspase-11 regulates cell migration by promoting Aip1-Cofilin-mediated actin depolymerization

Li, J., Brieher, W. M., Scimone, M. L., Kang, S. J., Zhu, H., Yin, H., von Andrian, U. H., Mitchison, T. & Yuan, J., Mar 2007, In : Nature Cell Biology. 9, 3, p. 276-286 11 p.

Research output: Contribution to journalArticle

Characterization of neurohistone variants and post-translational modifications by electron capture dissociation mass spectrometry

Garcia, B. A., Siuti, N., Thomas, C. E., Mizzen, C. A. & Kelleher, N. L., Jan 1 2007, In : International Journal of Mass Spectrometry. 259, 1-3, p. 184-196 13 p.

Research output: Contribution to journalArticle

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

Gordon, L., Yang, S., Tran-Gyamfi, M., Baggott, D., Christensen, M., Hamilton, A., Crooijmans, R., Groenen, M., Lucas, S., Ovcharenko, I. & Stubbs, L., Nov 2007, In : Genome Research. 17, 11, p. 1603-1613 11 p.

Research output: Contribution to journalArticle

Determination of haplotypes from single DNA molecules: A method for single-molecule barcoding

Xiao, M., Gordon, M. P., Phong, A., Ha, C., Chan, T. F., Cai, D., Selvin, P. R. & Kwok, P. Y., Sep 1 2007, In : Human mutation. 28, 9, p. 913-921 9 p.

Research output: Contribution to journalArticle

Diversities and similarities in P450 systems: An introduction

Schuler, M. A. & Sligar, S. G., 2007, In : Metal Ions in Life Sciences. 3, p. 1-26 26 p.

Research output: Contribution to journalArticle

FMRP phosphorylation reveals an immediate-early signaling pathway triggered by group I mGluR and mediated by PP2A

Narayanan, U., Nalavadi, V., Nakamoto, M., Pallas, D. C., Ceman, S., Bassell, G. J. & Warren, S. T., Dec 26 2007, In : Journal of Neuroscience. 27, 52, p. 14349-14357 9 p.

Research output: Contribution to journalArticle

Global assessment of combinatorial post-translational modification of core histones in yeast using contemporary mass spectrometry: LYS4 trimethylation correlates with degree of acetylation on the same H3 tail

Jiang, L., Smith, J. N., Anderson, S. L., Ma, P., Mizzen, C. A. & Kelleher, N. L., Sep 21 2007, In : Journal of Biological Chemistry. 282, 38, p. 27923-27934 12 p.

Research output: Contribution to journalArticle

Helicoverpa zea CYP6B8 and CYP321A1: Different molecular solutions to the problem of metabolizing plant toxins and insecticides

Rupasinghe, S. G., Wen, Z., Chiu, T. L. & Schuler, M. A., Dec 1 2007, In : Protein Engineering, Design and Selection. 20, 12, p. 615-624 10 p.

Research output: Contribution to journalArticle

High-pressure treatment of polytene chromosomes improves structural resolution

Novikov, D. V., Kireev, I. & Belmont, A. S., Jun 1 2007, In : Nature Methods. 4, 6, p. 483-485 3 p.

Research output: Contribution to journalArticle

High-resolution fate map of the snail Crepidula fornicata: The origins of ciliary bands, nervous system, and muscular elements

Hejnol, A., Martindale, M. Q. & Henry, J. Q., May 1 2007, In : Developmental Biology. 305, 1, p. 63-76 14 p.

Research output: Contribution to journalArticle

High-yield expression and purification of isotopically labeled cytochrome P450 monooxygenases for solid-state NMR spectroscopy

Rupasinghe, S. G., Duan, H., Frericks Schmidt, H. L., Berthold, D. A., Rienstra, C. M. & Schuler, M. A., Dec 2007, In : Biochimica et Biophysica Acta - Biomembranes. 1768, 12, p. 3061-3070 10 p.

Research output: Contribution to journalArticle

Homology of ciliary bands in Spiralian Trochophores

Henry, J. Q., Hejnol, A., Perry, K. J. & Martindale, M. Q., Dec 2007, In : Integrative and comparative biology. 47, 6, p. 865-871 7 p.

Research output: Contribution to journalArticle

How myosin VI coordinates its heads during processive movement

Sweeney, H. L., Park, H., Zong, A. B., Yang, Z., Selvin, P. R. & Rosenfeld, S. S., Jun 6 2007, In : EMBO Journal. 26, 11, p. 2682-2692 11 p.

Research output: Contribution to journalArticle

Isolation and identification of brain tumor stem cells from human brain neuroepithelial tumors

Fang, J. S., Deng, Y. W., Li, M. C., Chen, F. H., Wang, Y. J., Lu, M., Fang, F., Wu, J., Yang, Z. Y., Zhou, X. Y., Wang, F. & Chen, C., Jan 30 2007, In : National Medical Journal of China. 87, 5, p. 298-303 6 p.

Research output: Contribution to journalArticle

Microfluidic devices for culturing primary mammalian neurons at low densities

Millet, L. J., Stewart, M. E., Sweedler, J. V., Nuzzo, R. G. & Gillette, M. U., Jan 1 2007, In : Lab on a chip. 7, 8, p. 987-994 8 p.

Research output: Contribution to journalArticle

Microtubule binding by dynactin is required for microtubule organization but not cargo transport

Kim, H., Ling, S. C., Rogers, G. C., Kural, C., Selvin, P. R., Rogers, S. L. & Gelfand, V. I., Feb 26 2007, In : Journal of Cell Biology. 176, 5, p. 641-651 11 p.

Research output: Contribution to journalArticle

Mild performic acid oxidation enhances chromatographic and top down mass spectrometric analyses of histones

Pesavento, J. J., Garcia, B. A., Streeky, J. A., Kelleher, N. L. & Mizzen, C. A., Sep 2007, In : Molecular and Cellular Proteomics. 6, 9, p. 1510-1526 17 p.

Research output: Contribution to journalArticle

Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana

Rupasinghe, S. G., Duan, H. & Schuler, M. A., Jul 1 2007, In : Proteins: Structure, Function and Genetics. 68, 1, p. 279-293 15 p.

Research output: Contribution to journalArticle

Myrosinase in horseradish (Armoracia rusticana) root: Isolation of a full-length cDNA and its heterologous expression in Spodoptera frugiperda insect cells

Li, X., Wen, Z., Bohnert, H. J., Schuler, M. A. & Kushad, M. M., Jun 1 2007, In : Plant Science. 172, 6, p. 1095-1102 8 p.

Research output: Contribution to journalArticle

Pervasive combinatorial modification of histone H3 in human cells

Garcia, B. A., Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Jun 1 2007, In : Nature Methods. 4, 6, p. 487-489 3 p.

Research output: Contribution to journalArticle

Rapid DNA mapping by fluorescent single molecule detection

Xiao, M., Phong, A., Ha, C., Chan, T. F., Cai, D., Leung, L., Wan, E., Kistler, A. L., DeRisi, J. L., Selvin, P. R. & Kwok, P. Y., Feb 2007, In : Nucleic acids research. 35, 3, e16.

Research output: Contribution to journalArticle

Splicing-independent recruitment of spliceosomal small nuclear RNPs to nascent RNA polymerase II transcripts

Patel, S. B., Novikova, N. & Bellini, M., Sep 10 2007, In : Journal of Cell Biology. 178, 6, p. 937-949 13 p.

Research output: Contribution to journalArticle

The cellular world according to Hsp90

Richter, K., Hendershot, L. M. & Freeman, B. C., Feb 1 2007, In : Nature Structural and Molecular Biology. 14, 2, p. 90-94 5 p.

Research output: Contribution to journalArticle

The p23 molecular chaperone promotes functional telomerase complexes through DNA dissociation

Toogun, O. A., Zeiger, W. & Freeman, B. C., Apr 3 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 14, p. 5765-5770 6 p.

Research output: Contribution to journalArticle

The tripartite motif of nuclear factor 7 is required for its association with transcriptional units

Beenders, B., Jones, P. L. & Bellini, M., Apr 2007, In : Molecular and cellular biology. 27, 7, p. 2615-2624 10 p.

Research output: Contribution to journalArticle

The unique insert at the end of the myosin VI motor is the sole determinant of directionality

Park, H., Li, A., Chen, L. Q., Houdusse, A., Selvin, P. R. & Sweeney, H. L., Jan 16 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 3, p. 778-783 6 p.

Research output: Contribution to journalArticle

Three-dimensional particle tracking via bifocal imaging

Toprak, E., Balci, H., Blehm, B. H. & Selvin, P. R., Jul 2007, In : Nano letters. 7, 7, p. 2043-2045 3 p.

Research output: Contribution to journalArticle

Tracking melanosomes inside a cell to study molecular motors and their interaction

Kural, C., Serpinskaya, A. S., Chou, Y. H., Goldman, R. D., Gelfand, V. I. & Selvin, P. R., Mar 27 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 13, p. 5378-5382 5 p.

Research output: Contribution to journalArticle

2008

Actin disassembly by cofilin, coronin, and Aip1 occurs in bursts and is inhibited by barbed-end cappers

Hao, Y. K., Charras, G. T., Mitchison, T. J. & Brieher, W. M., Jul 28 2008, In : Journal of Cell Biology. 182, 2, p. 341-353 13 p.

Research output: Contribution to journalArticle

Aflatoxin B1 detoxification by CYP321A1 in Helicoverpa zea

Niu, G., Wen, Z., Rupasinghe, S. G., Ren, S. Z., Berenbaum, M. R. & Schuler, M. A., Sep 2008, In : Archives of Insect Biochemistry and Physiology. 69, 1, p. 32-45 14 p.

Research output: Contribution to journalArticle

Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle

Pesavento, J. J., Yang, H., Kelleher, N. L. & Mizzen, C. A., Jan 2008, In : Molecular and cellular biology. 28, 1, p. 468-486 19 p.

Research output: Contribution to journalArticle