Research Output 1972 2019

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2011

Spatial light interference tomography (SLIT)

Wang, Z., Marks, D. L., Carney, P. S., Millet, L. J., Gillette, M. L., Mihi, A., Braun, P. V., Shen, Z., Prasanth, S. G. & Popescu, G., Oct 10 2011, In : Optics Express. 19, 21, p. 19907-19918 12 p.

Research output: Contribution to journalArticle

tomography
refractivity
interference
numerical aperture
Born approximation

Stimulation of yeast telomerase activity by the ever shorter telomere 3 (Est3) subunit is dependent on direct interaction with the catalytic protein Est2

Talley, J. M., DeZwaan, D. C., Maness, L. D., Freeman, B. C. & Friedman, K. L., Jul 29 2011, In : Journal of Biological Chemistry. 286, 30, p. 26431-26439 9 p.

Research output: Contribution to journalArticle

Telomerase
Telomere
Yeast
Yeasts
Proteins

Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase α

Sun, J., Yang, Y., Wan, K., Mao, N., Yu, T. Y., Lin, Y. C., Dezwaan, D. C., Freeman, B. C., Lin, J. J., Lue, N. F. & Lei, M., Feb 2011, In : Cell Research. 21, 2, p. 258-274 17 p.

Research output: Contribution to journalArticle

Catalytic DNA
Fungal Proteins
Telomere
Dimerization
DNA-Directed DNA Polymerase

The non-receptor tyrosine kinase Lyn controls neutrophil adhesion by recruiting the CrkL-C3G complex and activating Rap1 at the leading edge

He, Y., Kapoor, A., Cook, S., Liu, S., Xiang, Y., Rao, C. V., Kenis, P. J. A. & Wang, F., Jul 1 2011, In : Journal of Cell Science. 124, 13, p. 2153-2164 12 p.

Research output: Contribution to journalArticle

Protein-Tyrosine Kinases
Chemotaxis
Neutrophils
Guanine Nucleotide-Releasing Factor 2
Cell-Matrix Junctions

The PI3K-Akt pathway inhibits senescence and promotes self-renewal of human skin-derived precursors in vitro

Liu, S., Liu, S., Wang, X., Zhou, J., Cao, Y., Wang, F. & Duan, E., Aug 1 2011, In : Aging Cell. 10, 4, p. 661-674 14 p.

Research output: Contribution to journalArticle

Foreskin
Phosphatidylinositol 3-Kinases
Skin
Stem Cells
Glycogen Synthase Kinase 3

Two-photon 3D fiona of individual quantum dots in an aqueous environment

Zhang, R., Rothenberg, E., Fruhwirth, G., Simonson, P. D., Ye, F., Golding, I., Ng, T., Lopes, W. & Selvin, P. R., Oct 12 2011, In : Nano Letters. 11, 10, p. 4074-4078 5 p.

Research output: Contribution to journalArticle

Semiconductor quantum dots
Photons
quantum dots
Microscopic examination
photons
2010

Actin-driven cell dynamics probed by Fourier transform light scattering

Ding, H., Millet, L. J., Gillette, M. L. & Popescu, G., Aug 2 2010, In : Biomedical Optics Express. 1, 1, p. 260-267 8 p.

Research output: Contribution to journalArticle

Fourier Analysis
Actins
light scattering
Light
cells

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression

Bernard, D., Kannanganattu, P. K., Tripathi, V., Colasse, S., Nakamura, T., Xuan, Z., Zhang, M. Q., Sedel, F., Jourdren, L., Coulpier, F., Triller, A., Spector, D. L. & Bessis, A., Sep 2010, In : EMBO Journal. 29, 18, p. 3082-3093 12 p.

Research output: Contribution to journalArticle

Untranslated RNA
Gene expression
Transcription
Neoplasm Metastasis
Gene Expression

A phosphatidylinositol 3-kinase/protein kinase B-independent activation of mammalian target of rapamycin signaling is sufficient to induce skeletal muscle hypertrophy

Goodman, C. A., Miu, M. H., Frey, J. W., Mabrey, D. M., Lincoln, H. C., Ge, Y., Chen, J. & Hornberger, T. A., Sep 15 2010, In : Molecular biology of the cell. 21, 18, p. 3258-3268 11 p.

Research output: Contribution to journalArticle

Phosphatidylinositol 3-Kinase
Proto-Oncogene Proteins c-akt
Sirolimus
Hypertrophy
Skeletal Muscle

Arabidopsis CYP72C1 is an atypical cytochrome P450 that inactivates brassinosteroids

Thornton, L. E., Rupasinghe, S. G., Peng, H., Schuler, M. A. & Neff, M. M., Jul 29 2010, In : Plant Molecular Biology. 74, 1, p. 167-181 15 p.

Research output: Contribution to journalArticle

Brassinosteroids
brassinosteroids
Mixed Function Oxygenases
Arabidopsis
cytochrome P-450

Arginines of the RGG box regulate FMRP association with polyribosomes and mRNA

Blackwell, E., Zhang, X. & Ceman, S., Jan 11 2010, In : Human molecular genetics. 19, 7, p. 1314-1323 10 p., ddq007.

Research output: Contribution to journalArticle

Polyribosomes
Arginine
Messenger RNA
Methylation
RNA

A WD-repeat protein stabilizes ORC binding to chromatin

Shen, Z., Sathyan, K. M., Geng, Y., Zheng, R., Chakraborty, A., Freeman, B. C., Wang, F., Kannanganattu, P. K. & Prasanth, S. G., Oct 8 2010, In : Molecular cell. 40, 1, p. 99-111 13 p.

Research output: Contribution to journalArticle

Origin Recognition Complex
Chromatin
Cell Cycle
WD40 Repeats
Heterochromatin

BAC TG-EMBED: One-step method for high-level, copy-number-dependent, position-independent transgene expression

Bian, Q. & Belmont, A. S., Apr 10 2010, In : Nucleic acids research. 38, 11, gkq178.

Research output: Contribution to journalArticle

Transgenes
Chromosomes
Genes
Chromatin
Mammalian Chromosomes

Circadian integration of glutamatergic signals by little SAAS in novel suprachiasmatic circuits

Atkins, N., Mitchell, J. W., Romanova, E. V., Morgan, D. J., Cominski, T. P., Ecker, J. L., Pintar, J. E., Sweedler, J. V. & Gillette, M. L., Nov 1 2010, In : PloS one. 5, 9, p. 1-13 13 p., e12612.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Gastrin-Releasing Peptide
Light
Networks (circuits)
Vasoactive Intestinal Peptide

Differential localization of mRNAs during early development in the mollusc, Crepidula fornicata

Henry, J. J., Perry, K. J., Fukui, L. & Alvi, N., Nov 1 2010, In : Integrative and Comparative Biology. 50, 5, p. 720-733 14 p.

Research output: Contribution to journalArticle

molluscs
early development
cell division
centrosomes
cells

Direct cellular peptidomics of supraoptic magnocellular and hippocampal neurons in low-density cocultures

Millet, L. J., Bora, A., Sweedler, J. V. & Gillette, M. L., Jan 20 2010, In : ACS Chemical Neuroscience. 1, 1, p. 36-48 13 p.

Research output: Contribution to journalArticle

Coculture Techniques
Neurons
Peptides
Neurokinin B
Chromogranins

Dynamic plasticity of large-scale chromatin structure revealed by self-assembly of engineered chromosome regions

Sinclair, P., Bian, Q., Plutz, M., Heard, E. & Belmont, A. S., Sep 6 2010, In : Journal of Cell Biology. 190, 5, p. 761-776 16 p.

Research output: Contribution to journalArticle

Chromatin
Chromosomes
Bacterial Artificial Chromosomes
Interphase
Erythroblasts

Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry

Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. L., Sweedler, J. V. & Kelleher, N. L., Feb 1 2010, In : Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.

Research output: Contribution to journalArticle

Circadian Clocks
Suprachiasmatic Nucleus
Tandem Mass Spectrometry
Mass spectrometry
Rats

Estrogen fueled, nuclear kiss: Did it move for you?

Belmont, A. S., Jan 1 2010, In : Nucleus. 1, 5, 13051.

Research output: Contribution to journalArticle

Estrogens
Chromosomes
Chromosomes, Human, Pair 15
Interphase
Genes

Facioscapulohumeral muscular dystrophy region gene-1 (FRG-1) is an actin-bundling protein associated with muscle-attachment sites

Liu, Q., Jones, T. I., Tang, V., Brieher, W. M. & Jones, P. L., Apr 1 2010, In : Journal of Cell Science. 123, 7, p. 1116-1123 8 p.

Research output: Contribution to journalArticle

Facioscapulohumeral Muscular Dystrophy
Actins
Muscles
Genes
Proteins

Formation of Salt Bridges Mediates Internal Dimerization of Myosin VI Medial Tail Domain

Kim, H. J., Hsin, J., Liu, Y., Selvin, P. R. & Schulten, K. J., Nov 10 2010, In : Structure. 18, 11, p. 1443-1449 7 p.

Research output: Contribution to journalArticle

Dimerization
Salts
Molecular Dynamics Simulation
Static Electricity
myosin VI

Fragile X protein family member FXR1P is regulated by microRNAs

Cheever, A., Blackwell, E. & Ceman, S., Aug 1 2010, In : RNA. 16, 8, p. 1530-1539 10 p.

Research output: Contribution to journalArticle

MicroRNAs
Proteins
3' Untranslated Regions
Seeds
Luciferases

Guiding neuron development with planar surface gradients of substrate cues deposited using microfluidic devices

Millet, L. J., Stewart, M. E., Nuzzo, R. G. & Gillette, M. L., 2010, In : Lab on a Chip. 10, 12, p. 1525-1535 11 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
Neurons
Cues
Laminin

High-efficiency induction of neural conversion in human ESCs and human induced pluripotent stem cells with a single chemical inhibitor of transforming growth factor beta superfamily receptors

Zhou, J., Su, P., Li, D., Tsang, S., Duan, E. & Wang, F., Oct 1 2010, In : Stem Cells. 28, 10, p. 1741-1750 10 p.

Research output: Contribution to journalArticle

Transforming Growth Factor beta Receptors
Induced Pluripotent Stem Cells
Efficiency
Morphogenesis
Activins

Histone H1 phosphorylation is associated with transcription by RNA polymerases I and II

Zheng, Y., John, S., Pesavento, J. J., Schultz-Norton, J. R., Schiltz, R. L., Baek, S., Nardulli, A., Hager, G. L., Kelleher, N. L. & Mizzen, C. A., May 3 2010, In : Journal of Cell Biology. 189, 3, p. 407-415 9 p.

Research output: Contribution to journalArticle

RNA Polymerase I
RNA Polymerase II
Interphase
Histones
Phosphorylation

Hsp70 gene association with nuclear speckles is Hsp70 promoter specific

Hu, Y., Plutz, M. & Belmont, A. S., Nov 15 2010, In : Journal of Cell Biology. 191, 4, p. 711-719 9 p.

Research output: Contribution to journalArticle

HSP70 Heat-Shock Proteins
Transgenes
Genes
Small Heat-Shock Proteins
Bacterial Artificial Chromosomes
Origin Recognition Complex
Heterochromatin
Protein Binding
Chromatin
Proteins

Improved hidden Markov models for molecular motors, part 1: Basic theory

Müllner, F. E., Syed, S., Selvin, P. R. & Sigworth, F. J., Dec 1 2010, In : Biophysical journal. 99, 11, p. 3684-3695 12 p.

Research output: Contribution to journalArticle

Molecular Models
Chemical Models
Ion Channels

Improved hidden Markov models for molecular motors, part 2: Extensions and application to experimental data

Syed, S., Müllner, F. E., Selvin, P. R. & Sigworth, F. J., Dec 1 2010, In : Biophysical journal. 99, 11, p. 3696-3703 8 p.

Research output: Contribution to journalArticle

Molecular Models
Myosin Type V
Melanosomes
Noise
Population

Insights into interphase large-scale chromatin structure from analysis of engineered chromosome regions

Belmont, A. S., Hu, Y., Sinclair, P. B., Wu, W., Bian, Q. & Kireev, I., Dec 1 2010, In : Cold Spring Harbor symposia on quantitative biology. 75, p. 453-460 8 p.

Research output: Contribution to journalArticle

Interphase
Chromosomes
Chromatin
Fibers
B-Form DNA

Integrated biochemical and mechanical signals regulate multifaceted human embryonic stem cell functions

Li, D., Zhou, J., Wang, L., Shin, M. E., Su, P., Lei, X., Kuang, H., Guo, W., Yang, H., Cheng, L., Tanaka, T. S., Leckband, D. E., Reynolds, A. B., Duan, E. & Wang, F., Nov 1 2010, In : Journal of Cell Biology. 191, 3, p. 631-644 14 p.

Research output: Contribution to journalArticle

Cadherins
Nonmuscle Myosin Type IIA
Physiological Feedback
Intercellular Junctions
Survival

Lineage-specific transcription factors and the evolution of gene regulatory networks

Nowick, K. & Stubbs, L. J., Jan 16 2010, In : Briefings in Functional Genomics and Proteomics. 9, 1, p. 65-78 14 p., elp056.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Transcription Factors
Genes
Gene Expression
Proteins

Mammalian target of rapamycin regulates miRNA-1 and follistatin in skeletal myogenesis

Sun, Y., Ge, Y., Drnevich, J., Zhao, Y., Band, M. & Chen, J., Jun 28 2010, In : Journal of Cell Biology. 189, 7, p. 1157-1169 13 p.

Research output: Contribution to journalArticle

Follistatin
Muscle Development
Sirolimus
MicroRNAs
Histone Deacetylase 1

Material properties of the cell dictate stress-induced spreading and differentiation in embryonic stemcells

Chowdhury, F., Na, S., Li, D., Poh, Y. C., Tanaka, T. S., Wang, F. & Wang, N., Jan 2010, In : Nature Materials. 9, 1, p. 82-88 7 p.

Research output: Contribution to journalArticle

Stem cells
Materials properties
stem cells
cells
softness

Mechanical force affects expression of an in vitro metastasis-like phenotype in HCT-8 cells

Tang, X., Kuhlenschmidt, T. B., Zhou, J., Bell, P., Wang, F., Kuhlenschmidt, M. S. & Saif, M. T. A., Oct 20 2010, In : Biophysical journal. 99, 8, p. 2460-2469 10 p.

Research output: Contribution to journalArticle

Neoplasm Metastasis
Phenotype
Cadherins
In Vitro Techniques
Cultured Cells

Novel domains in the hnRNP G/RBMX protein with distinct roles in RNA binding and targeting nascent transcripts

Kanhoush, R., Beenders, B., Perrin, C., Moreau, J., Bellini, M. & Penrad-Mobayed, M., Jan 1 2010, In : Nucleus. 1, 1, p. 109-122 14 p.

Research output: Contribution to journalArticle

Ribonucleoproteins
RNA
Proteins
RNA Precursors
RNA Probes

Nuclear organization and dynamics of 7SK RNA in regulating gene expression

Kannanganattu, P. K., Camiolo, M., Chan, G., Tripathi, V., Denis, L., Nakamura, T., Hübner, M. R. & Spector, D. L., Dec 1 2010, In : Molecular biology of the cell. 21, 23, p. 4184-4196 13 p.

Research output: Contribution to journalArticle

Positive Transcriptional Elongation Factor B
RNA
RNA Polymerase II
Gene Expression
Reporter Genes

Peptides from purified soybean β-conglycinin inhibit fatty acid synthase by interaction with the thioesterase catalytic domain

Martinez-Villaluenga, C., Rupasinghe, S. G., Schuler, M. A. & Demejia, E., Mar 1 2010, In : FEBS Journal. 277, 6, p. 1481-1493 13 p.

Research output: Contribution to journalArticle

Fatty Acid Synthases
Soybeans
Catalytic Domain
Peptides
Inhibitory Concentration 50

Polypurine-repeat-containing RNAs: A novel class of long non-coding RNA in mammalian cells

Zheng, R., Shen, Z., Tripathi, V., Xuan, Z., Freier, S. M., Bennett, C. F., Prasanth, S. G. & Kannanganattu, P. K., Nov 1 2010, In : Journal of cell science. 123, 21, p. 3734-3744 11 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
RNA
Nuclear Matrix-Associated Proteins
Telophase
Trinucleotide Repeats

Quantitative analysis of actin turnover in listeria comet tails: Evidence for catastrophic filament turnover

Kueh, H. Y., Brieher, W. M. & Mitchison, T. J., Oct 6 2010, In : Biophysical journal. 99, 7, p. 2153-2162 10 p.

Research output: Contribution to journalArticle

Listeria
Actin Cytoskeleton
Tail
Actins
Polymers

Rapid sequence and expression divergence suggest selection for novel function in primate-specific KRAB-ZNF genes

Nowick, K., Hamilton, A. T., Zhang, H. & Stubbs, L. J., Nov 1 2010, In : Molecular biology and evolution. 27, 11, p. 2606-2617 12 p.

Research output: Contribution to journalArticle

zinc finger motif
Zinc Fingers
primate
Primates
zinc
Centrosome
Organelles
Oocytes
RNA
Spisula

Regulation of inhibitory synapses by presynaptic D 4 dopamine receptors in thalamus

Govindaiah, G., Wang, T., Gillette, M. L., Crandall, S. R. & Cox, C. L., Nov 1 2010, In : Journal of neurophysiology. 104, 5, p. 2757-2765 9 p.

Research output: Contribution to journalArticle

Thalamic Nuclei
Dopamine Receptors
Thalamus
Synapses
Globus Pallidus

Slowing Bacterial Translation Speed Enhances Eukaryotic Protein Folding Efficiency

Siller, E., DeZwaan, D. C., Anderson, J. F., Freeman, B. C. & Barral, J. M., Jan 21 2010, In : Journal of Molecular Biology. 396, 5, p. 1310-1318 9 p.

Research output: Contribution to journalArticle

Protein Folding
Eukaryota
Bacteria
Recombinant Proteins
Peptides

Spatiotemporal organization, regulation, and functions of tractions during neutrophil chemotaxis

Shin, M. E., He, Y., Li, D., Na, S., Chowdhury, F., Poh, Y. C., Collin, O., Su, P., De Lanerolle, P., Schwartz, M. A., Wang, N. & Wang, F., Oct 28 2010, In : Blood. 116, 17, p. 3297-3310 14 p.

Research output: Contribution to journalArticle

Myosin Type II
Traction
Chemotaxis
Neutrophils
Nonmuscle Myosin Type IIA

The G-protein-coupled receptor, GPR84, is important for eye development in Xenopus laevis

Perry, K. J., Johnson, V. R., Malloch, E. L., Fukui, L., Wever, J., Thomas, A. G., Hamilton, P. W. & Henry, J. J., Nov 1 2010, In : Developmental Dynamics. 239, 11, p. 3024-3037 14 p.

Research output: Contribution to journalArticle

Xenopus laevis
G-Protein-Coupled Receptors
Lenses
Retina
Cornea

The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation

Tripathi, V., Ellis, J. D., Shen, Z., Song, D. Y., Pan, Q., Watt, A. T., Freier, S. M., Bennett, C. F., Sharma, A., Bubulya, P. A., Blencowe, B. J., Prasanth, S. G. & Kannanganattu, P. K., Sep 1 2010, In : Molecular cell. 39, 6, p. 925-938 14 p.

Research output: Contribution to journalArticle

Untranslated RNA
Alternative Splicing
Serine
Arginine
Phosphorylation

The slipper snail, Crepidula: An emerging lophotrochozoan model system

Henry, J. J., Collin, R. & Perry, K. J., Jun 1 2010, In : Biological Bulletin. 218, 3, p. 211-229 19 p.

Research output: Contribution to journalArticle

Snails
snails
Developmental Biology
Mollusca
Expressed Sequence Tags

Topography and refractometry of nanostructures using spatial light interference microscopy

Wang, Z., Chun, I. S., Li, X., Ong, Z. Y., Pop, E., Millet, L., Gillette, M. L. & Popescu, G., Jan 15 2010, In : Optics Letters. 35, 2, p. 208-210 3 p.

Research output: Contribution to journalArticle

topography
microscopy
interference
neurons
decoupling

β-catenin and early development in the Gastropod, Crepidula fornicata

Henry, J. J., Perry, K. J. & Martindale, M. Q., Nov 1 2010, In : Integrative and Comparative Biology. 50, 5, p. 707-719 13 p.

Research output: Contribution to journalArticle

early development
Gastropoda
embryo (animal)
cells
hindgut