Research Output 1981 2019

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Electrical signals control wound healing through phosphatidylinositol-3-OH kinase-γ and PTEN

Zhao, M., Song, B., Pu, J., Wada, T., Reid, B., Tai, G., Wang, F., Guo, A., Walczysko, P., Gu, Y., Sasaki, T., Suzuki, A., Forrester, J. V., Bourne, H. R., Devreotes, P. N., McCaig, C. D. & Penninger, J. M., Jul 27 2006, In : Nature. 442, 7101, p. 457-460 4 p.

Research output: Contribution to journalArticle

Phosphatidylinositol 3-Kinases
Wound Healing
Cell Movement
Cues
Essential Genes

Electrochemical cues regulate assembly of the Frizzled/Dishevelled complex at the plasma membrane during planar epithelial polarization

Simons, M., Gault, W. J., Gotthardt, D., Rohatgi, R., Klein, T. J., Shao, Y., Lee, H. J., Wu, A. L., Fang, Y., Satlin, L. M., Dow, J. T., Chen, J., Zheng, J., Boutros, M. & Mlodzik, M., Feb 24 2009, In : Nature Cell Biology. 11, 3, p. 286-294 9 p.

Research output: Contribution to journalArticle

Cues
Phospholipids
Cell Membrane
Basic Amino Acids
Cell Polarity

Embryonic expression of pre-initiation DNA replication factors in Xenopus laevis

Walter, B. E. & Henry, J. J., Nov 1 2004, In : Gene Expression Patterns. 5, 1, p. 81-89 9 p.

Research output: Contribution to journalArticle

Xenopus laevis
DNA Replication
Pronephros
Branchial Region
Proliferating Cell Nuclear Antigen

Emission Polarization of Europium and Terbium Chelates

Reifenberger, J. G., Snyder, G. E., Baym, G. & Selvin, P. R., Nov 20 2003, In : Journal of Physical Chemistry B. 107, 46, p. 12862-12873 12 p.

Research output: Contribution to journalArticle

Terbium
Europium
terbium
europium
chelates

Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry

Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 1 2010, In : Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.

Research output: Contribution to journalArticle

Circadian Clocks
Suprachiasmatic Nucleus
Tandem Mass Spectrometry
Mass spectrometry
Rats

Engineered chromosome regions with altered sequence composition demonstrate hierarchical large-scale folding within metaphase chromosomes

Strukov, Y. G., Wang, Y. & Belmont, A. S., Jul 7 2003, In : Journal of Cell Biology. 162, 1, p. 23-35 13 p.

Research output: Contribution to journalArticle

Metaphase
Chromosomes
Transgenes
Lac Repressors
Chromosome Structures

Enhanced toxicity and induction of cytochrome P450s suggest a cost of "eavesdropping" in a multitrophic interaction

Zeng, R. S., Wen, Z., Niu, G., Schuler, M. A. & Berenbaum, M. R., May 1 2009, In : Journal of Chemical Ecology. 35, 5, p. 526-532 7 p.

Research output: Contribution to journalArticle

Mixed Function Oxygenases
cytochrome P-450
Cytochrome P-450 Enzyme System
cytochrome
Toxicity

Epi-illumination gradient light interference microscopy for imaging opaque structures

Kandel, M. E., Hu, C., Naseri Kouzehgarani, G., Min, E., Sullivan, K. M., Kong, H., Li, J. M., Robson, D. N., Gillette, M. U., Best-Popescu, C. & Popescu, G., Dec 1 2019, In : Nature communications. 10, 1, 4691.

Research output: Contribution to journalArticle

Open Access
Interference Microscopy
Light interference
Lighting
Microscopic examination
Multiple scattering

EPRS is a critical mTORC1-S6K1 effector that influences adiposity in mice

Arif, A., Terenzi, F., Potdar, A. A., Jia, J., Sacks, J., China, A., Halawani, D., Vasu, K., Li, X., Brown, J. M., Chen, J., Kozma, S. C., Thomas, G. & Fox, P. L., Feb 16 2017, In : Nature. 542, 7641, p. 357-361 5 p.

Research output: Contribution to journalArticle

Ribosomal Protein S6 Kinases
Adiposity
Fatty Acid Transport Proteins
Phosphorylation
Adipocytes

Establishment and activity of the D quadrant organizer in the marine gastropod Crepidula fornicata

Henry, J. J., Lyons, D. C., Perry, K. J. & Osborne, C. C., Nov 15 2017, In : Developmental Biology. 431, 2, p. 282-296 15 p.

Research output: Contribution to journalArticle

Gastropoda
Embryonic Structures
Asymmetric Cell Division
Mollusca
Snails

Establishment of the dorsoventral axis in nemertean embryos: Evolutionary considerations of spiralian development

Henry, J. J. & Martindale, M. Q., 1994, In : Developmental Genetics. 15, 1, p. 64-78 15 p.

Research output: Contribution to journalArticle

Mollusca
Embryonic Structures
Blastomeres
Ectoderm
Larva

Estrogen fueled, nuclear kiss: Did it move for you?

Belmont, A. S., Jan 1 2010, In : Nucleus. 1, 5, 13051.

Research output: Contribution to journalArticle

Estrogens
Chromosomes
Chromosomes, Human, Pair 15
Interphase
Genes

Evolutionary dissociation between cleavage, cell lineage and embryonic axes in sea urchin embryos

Henry, J. J., Klueg, K. M. & Raff, R. A., Apr 1992, In : Development. 114, 4, p. 931-938 8 p.

Research output: Contribution to journalArticle

Sea Urchins
embryo
Cell Lineage
cleavage
Embryonic Structures

Evolutionary toxicogenomics: Diversification of the Cyp12d1 and Cyp12d3 genes in Drosophila species

McDonnell, C. M., King, D., Comeron, J. M., Li, H., Sun, W., Berenbaum, M. R., Schuler, M. A. & Pittendrigh, B. R., Jun 1 2012, In : Journal of Molecular Evolution. 74, 5-6, p. 281-296 16 p.

Research output: Contribution to journalArticle

toxicogenomics
Toxicogenetics
Drosophila
Drosophila melanogaster
gene

Evolution of cleavage programs in relationship to axial specification and body plan evolution

Henry, J. J. & Martindale, M. Q., Jan 1 1998, In : Biological Bulletin. 195, 3, p. 363-366 4 p.

Research output: Contribution to journalArticle

Expanding the cellular molecular chaperone network through the ubiquitous cochaperones

Echtenkamp, F. J. & Freeman, B. C., Mar 1 2012, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1823, 3, p. 668-673 6 p.

Research output: Contribution to journalArticle

HSP90 Heat-Shock Proteins
Molecular Chaperones
Heat-Shock Proteins
Proteins
Homeostasis
Papilio polyxenes
methoxsalen
Methoxsalen
Papilionidae
psoralens

Expression of fragile X mental retardation protein within the vocal control system of developing and adult male zebra finches

Winograd, C., Clayton, D. & Ceman, S., Nov 11 2008, In : Neuroscience. 157, 1, p. 132-142 11 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Finches
Equidae
Music
Learning

Expression of pluripotency factors in larval epithelia of the frog Xenopus: Evidence for the presence of cornea epithelial stem cells

Perry, K. J., Thomas, A. G. & Henry, J. J., Feb 15 2013, In : Developmental Biology. 374, 2, p. 281-294 14 p.

Research output: Contribution to journalArticle

Xenopus
Anura
Cornea
Stem Cells
Epithelium

Extent of Voltage Sensor Movement during Gating of Shaker K+ Channels

Posson, D. J. & Selvin, P. R., Jul 10 2008, In : Neuron. 59, 1, p. 98-109 12 p.

Research output: Contribution to journalArticle

Energy Transfer
Luminescence
Structural Models
Research

Extracting dwell time sequences from processive molecular motor data

Milescu, L. S., Yildiz, A., Selvin, P. R. & Sachs, F., Nov 2006, In : Biophysical journal. 91, 9, p. 3135-3150 16 p.

Research output: Contribution to journalArticle

Kinesin
Myosins
Dyneins
Proton-Translocating ATPases
DNA-Directed RNA Polymerases

Ex vivo eye tissue culture methods for xenopus

Henry, J. J., Perry, K. J. & Hamilton, P. W., Apr 2019, In : Cold Spring Harbor protocols. 2019, 4, p. 274-278 5 p.

Research output: Contribution to journalArticle

Tissue culture
Xenopus
Lenses
Tissue
Regeneration

Facioscapulohumeral muscular dystrophy region gene-1 (FRG-1) is an actin-bundling protein associated with muscle-attachment sites

Liu, Q., Jones, T. I., Tang, V. W., Brieher, W. M. & Jones, P. L., Apr 1 2010, In : Journal of cell science. 123, 7, p. 1116-1123 8 p.

Research output: Contribution to journalArticle

Facioscapulohumeral Muscular Dystrophy
Actins
Muscles
Genes
Proteins

Facioscapulohumeral muscular dystrophy region gene 1 Is a dynamic RNA-associated and actin-bundling protein

Sun, C. Y. J., Van Koningsbruggen, S., Long, S. W., Straasheijm, K., Klooster, R., Jones, T. I., Bellini, M., Levesque, L., Brieher, W. M., Van Der Maarel, S. M. & Jones, P. L., Aug 12 2011, In : Journal of Molecular Biology. 411, 2, p. 397-416 20 p.

Research output: Contribution to journalArticle

Facioscapulohumeral Muscular Dystrophy
Actins
RNA
Genes
Proteins

Factors affecting authentic 5′ splice site selection in plant nuclei

McCullough, A. J., Lou, H. & Schuler, M. A., Mar 1993, In : Molecular and cellular biology. 13, 3, p. 1323-1331 9 p.

Research output: Contribution to journalArticle

RNA Splice Sites
Introns
Exons
Mutation
RNA Precursors

FGF signaling is required for lens regeneration in Xenopus Laevis

Fukui, L. & Henry, J. J., Jan 1 2011, In : Biological Bulletin. 221, 1, p. 137-145 9 p.

Research output: Contribution to journalArticle

Xenopus laevis
Lens
Lenses
Regeneration
Fibroblast Growth Factor Receptors

FIONA on Caenorhabditis elegans

Kural, C., Nonet, M. L. & Selvin, P. R., Jun 9 2009, In : Biochemistry. 48, 22, p. 4663-4665 3 p.

Research output: Contribution to journalArticle

Optical Imaging
Caenorhabditis elegans
Fluorescence
Imaging techniques
Fluorescent Dyes

Flt3L is a novel regulator of skeletal myogenesis

Ge, Y., Waldemer, R. J., Nalluri, R., Nuzzi, P. D. & Chen, J., Sep 9 2013, In : Journal of cell science. 126, 15, p. 3370-3379 10 p.

Research output: Contribution to journalArticle

Muscle Development
Phosphotransferases
Ligands
Myoblasts
p120 GTPase Activating Protein

Fluorescence imaging with one nanometer accuracy: Application to molecular motors

Yildiz, A. & Selvin, P. R., Jul 1 2005, In : Accounts of chemical research. 38, 7, p. 574-582 9 p.

Research output: Contribution to journalArticle

Myosin Type V
Fluorescence
Imaging techniques
Kinesin
Fluorophores

Fluorescence imaging with one-nanometer accuracy (fiona)

Wang, Y., Cai, E., Sheung, J., Lee, S. H., Teng, K. W. & Selvin, P. R., Sep 26 2014, In : Journal of Visualized Experiments. 91, e51774.

Research output: Contribution to journalArticle

Optical Imaging
Fluorescence
Imaging techniques
Quantum Dots
Semiconductor quantum dots

FMRP phosphorylation reveals an immediate-early signaling pathway triggered by group I mGluR and mediated by PP2A

Narayanan, U., Nalavadi, V., Nakamoto, M., Pallas, D. C., Ceman, S., Bassell, G. J. & Warren, S. T., Dec 26 2007, In : Journal of Neuroscience. 27, 52, p. 14349-14357 9 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Protein Phosphatase 2
Metabotropic Glutamate Receptors
Phosphorylation
TOR Serine-Threonine Kinases

Forkhead box protein O1 negatively regulates skeletal myocyte differentiation through degradation of mammalian target of rapamycin pathway components

Wu, A. L., Kim, J. H., Zhang, C., Unterman, T. G. & Chen, J., Mar 1 2008, In : Endocrinology. 149, 3, p. 1407-1414 8 p.

Research output: Contribution to journalArticle

Skeletal Muscle Fibers
Sirolimus
Insulin-Like Growth Factor II
Muscle Development
Phosphatidylinositol 3-Kinase

Formation of Salt Bridges Mediates Internal Dimerization of Myosin VI Medial Tail Domain

Kim, H. J., Hsin, J., Liu, Y., Selvin, P. R. & Schulten, K. J., Nov 10 2010, In : Structure. 18, 11, p. 1443-1449 7 p.

Research output: Contribution to journalArticle

Dimerization
Salts
Molecular Dynamics Simulation
Static Electricity
myosin VI

Fragile X Mental Retardation Protein FMRP binds mRNAs in the nucleus

Kim, M., Bellini, M. & Ceman, S., Jan 1 2009, In : Molecular and cellular biology. 29, 1, p. 214-228 15 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Messenger RNA
Simian virus 40
Cell Nucleus Active Transport
RNA-Binding Proteins

Fragile X protein family member FXR1P is regulated by microRNAs

Cheever, A., Blackwell, E. & Ceman, S., Aug 1 2010, In : RNA. 16, 8, p. 1530-1539 10 p.

Research output: Contribution to journalArticle

MicroRNAs
Proteins
3' Untranslated Regions
Seeds
Luciferases

FRAP-dependent serine phosphorylation of IRS-1 inhibits IRS-1 tyrosine phosphorylation

Hartman, M. E., Villela-Bach, M., Chen, J. & Freund, G. G., Jan 1 2001, In : Biochemical and Biophysical Research Communications. 280, 3, p. 776-781 6 p., 94214.

Research output: Contribution to journalArticle

TOR Serine-Threonine Kinases
Insulin Receptor Substrate Proteins
Phosphorylation
Serine
Tyrosine
Actin Capping Proteins
Adherens Junctions
Focal Segmental Glomerulosclerosis
Actins
Adhesives

Full-length myosin VI dimerizes and moves processively along actin filaments upon monomer clustering

Park, H., Ramamurthy, B., Travaglia, M., Safer, D., Chen, L. Q., Franzini-Armstrong, C., Selvin, P. R. & Sweeney, H. L., Feb 3 2006, In : Molecular cell. 21, 3, p. 331-336 6 p.

Research output: Contribution to journalArticle

Actin Cytoskeleton
Cluster Analysis
Dimerization
Hand
Kinesin

Functional and prognostic significance of long non-coding RNA MALAT1 as a metastasis driver in ER negative lymph node negative breast cancer

Jadaliha, M., Zong, X., Malakar, P., Ray, T., Singh, D. K., Freier, S. M., Jensen, T., Prasanth, S. G., Karni, R., Ray, P. S. & Prasanth, K. V., Jan 1 2016, In : Oncotarget. 7, 26, p. 40418-40436 19 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
Lymph Nodes
Breast Neoplasms
Neoplasm Metastasis
Triple Negative Breast Neoplasms

Functional CpG methylation system in a social insect

Wang, Y., Jorda, M., Jones, P. L., Maleszka, R., Ling, X., Robertson, H. M., Mizzen, C. A., Peinado, M. A. & Robinson, G. E., Oct 27 2006, In : Science. 314, 5799, p. 645-647 3 p.

Research output: Contribution to journalArticle

Honey
Bees
DNA Methylation
Methylation
Insects

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. L., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journalArticle

Circadian Clocks
Neuropeptides
Suprachiasmatic Nucleus
Clocks
Optics

Function and evolution of C2H2 zinc finger arrays

Stubbs, L. J., Sun, Y. & Caetano-Anolles, D., Jan 1 2011, In : Sub-Cellular Biochemistry. 52, p. 75-94 20 p.

Research output: Contribution to journalArticle

Zinc
Transcription Factors
Nucleotide Motifs
Proteins
DNA

Gain, loss and divergence in primate Zinc-Finger genes: A rich resource for evolution of gene regulatory differences between species

Nowick, K., Fields, C. J., Gernat, T., Caetano-Anolles, D., Kholina, N. & Stubbs, L. J., Jul 1 2011, In : PloS one. 6, 6, e21553.

Research output: Contribution to journalArticle

zinc finger motif
Zinc Fingers
Regulator Genes
regulator genes
Primates

Gene expression profiles of lens regeneration and development in Xenopus laevis

Malloch, E. L., Perry, K. J., Fukui, L., Johnson, V. R., Wever, J., Beck, C. W., King, M. W. & Henry, J. J., Sep 21 2009, In : Developmental Dynamics. 238, 9, p. 2340-2356 17 p.

Research output: Contribution to journalArticle

Xenopus laevis
Transcriptome
Lenses
Regeneration
Genes

Gene expression profiling reveals the heterogeneous transcriptional activity of Oct3/4 and its possible interaction with Gli2 in mouse embryonic stem cells

Li, Y., Drnevich, J., Akraiko, T., Band, M. R., Li, D., Wang, F., Matoba, R. & Tanaka, T. S., Nov 1 2013, In : Genomics. 102, 5-6, p. 456-467 12 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Puromycin
Pluripotent Stem Cells
Genes
Venus

Generation and characterization of novel antibodies highly selective for phosphorylated linked histone H1 in Tetrahymena and HeLa cells

Lu, M. J., Dadd, C. A., Mizzen, C. A., Perry, C. A., McLachlan, D. R., Annunziato, A. T. & Allis, C. D., Apr 1 1994, In : Chromosoma. 103, 2, p. 111-121 11 p.

Research output: Contribution to journalArticle

Tetrahymena
HeLa Cells
Histones
Antibodies
Mitosis

Generation of melanocytes from induced pluripotent stem cells

Yang, R., Jiang, M., Kumar, S. M., Xu, T., Wang, F., Xiang, L. & Xu, X., Dec 2011, In : Journal of Investigative Dermatology. 131, 12, p. 2458-2466 9 p.

Research output: Contribution to journalArticle

Induced Pluripotent Stem Cells
Melanocytes
Stem cells
Fibroblasts
Tail

Gene regulation by low level UV-B radiation: Identification by DNA array analysis

Brosché, M., Schuler, M. A., Kalbina, I., Connor, L. & Strid, Å., Sep 1 2002, In : Photochemical and Photobiological Sciences. 1, 9, p. 656-664 9 p.

Research output: Contribution to journalArticle

gene expression
Oligonucleotide Array Sequence Analysis
Gene expression
genes
deoxyribonucleic acid

Gene-specific characterization of human histone H2B by electron capture dissociation

Siuti, N., Roth, M. J., Mizzen, C. A., Kelleher, N. L. & Pesavento, J. J., Feb 1 2006, In : Journal of Proteome Research. 5, 2, p. 233-239 7 p.

Research output: Contribution to journalArticle

Histones
Genes
Cells
Electrons
Butyric Acid

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In : Genome biology. 14, 5, R41.

Research output: Contribution to journalArticle

Nelumbo
Nelumbo nucifera
Lotus
genome
Genome