Research Output 1981 2019

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2003

IGF-II transcription in skeletal myogenesis is controlled by mTOR and nutrients

Erbay, E., Park, I. H., Nuzzi, P. D., Schoenherr, C. J. & Chen, J., Dec 8 2003, In : Journal of Cell Biology. 163, 5, p. 931-936 6 p.

Research output: Contribution to journalArticle

Insulin-Like Growth Factor II
Muscle Development
Somatomedins
Food
Myoblasts
Papilio polyxenes
psoralens
NADPH-Ferrihemoprotein Reductase
cytochrome P-450
NADP (coenzyme)

Modulation of histone acetylation by [4-(acetylamino)-N-(2-amino-phenyl) benzamide] in HCT-8 colon carcinoma

Kraker, A. J., Mizzen, C. A., Hartl, B. G., Miin, J., Allis, C. D. & Merriman, R. L., Apr 1 2003, In : Molecular Cancer Therapeutics. 2, 4, p. 401-408 8 p.

Research output: Contribution to journalArticle

Acetylation
Histones
Colon
Carcinoma
Histone Deacetylase 2

Molecular docking of substrates and inhibitors in the catalytic site of CYP6B1, an insect cytochrome P450 monooxygenase

Baudry, J., Li, W., Pan, L., Berenbaum, M. R. & Schuler, M. A., Aug 1 2003, In : Protein Engineering. 16, 8, p. 577-587 11 p.

Research output: Contribution to journalArticle

Mixed Function Oxygenases
Cytochrome P-450 Enzyme System
Insects
Catalytic Domain
Substrates

Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization

Yildiz, A., Forkey, J. N., McKinney, S. A., Ha, T., Goldman, Y. E. & Selvin, P. R., Jun 27 2003, In : Science. 300, 5628, p. 2061-2065 5 p.

Research output: Contribution to journalArticle

Myosin Type V
Hand
Actins
Coloring Agents
Adenosine Triphosphate

Phosphorylation influences the translation state of FMRP-associated polyribosomes

Ceman, S., O'Donnell, W. T., Reed, M., Patton, S., Pohl, J. & Warren, S. T., Dec 15 2003, In : Human molecular genetics. 12, 24, p. 3295-3305 11 p.

Research output: Contribution to journalArticle

Polyribosomes
Phosphorylation
Serine
Fragile X Mental Retardation Protein
Fragile X Syndrome

PLD1 Regulates mTOR Signaling and Mediates Cdc42 Activation of S6K1

Fang, Y., Park, I. H., Wu, A. L., Du, G., Huang, P., Frohman, M. A., Walker, S. J., Brown, H. A. & Chen, J., Dec 2 2003, In : Current Biology. 13, 23, p. 2037-2044 8 p.

Research output: Contribution to journalArticle

Ribosomal Protein S6 Kinases
Phospholipase D
phospholipase D
Sirolimus
phosphotransferases (kinases)

Rac and Cdc42 play distinct roles in regulating PI(3,4,5)P3 and polarity during neutrophil chemotaxis

Srinivasan, S., Wang, F., Glavas, S., Ott, A., Hofmann, F., Aktories, K., Kalman, D. & Bourne, H. R., Feb 3 2003, In : Journal of Cell Biology. 160, 3, p. 375-385 11 p.

Research output: Contribution to journalArticle

Chemotaxis
Phosphatidylinositols
Actins
Neutrophils
Chemotactic Factors

Requirement of Mammalian Timeless for Circadian Rhythmicity

Barnes, J. W., Tischkau, S. A., Barnes, J. A., Mitchell, J. W., Burgoon, P. W., Hickok, J. R. & Gillette, M. L., Oct 17 2003, In : Science. 302, 5644, p. 439-442 4 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Periodicity
Period Circadian Proteins
Drosophila
Protein Isoforms

Sequential recruitment of HAT and SWI/SNF components to condensed chromatin by VP16

Memedula, S. & Belmont, A. S., Feb 2003, In : Current Biology. 13, 3, p. 241-246 6 p.

Research output: Contribution to journalArticle

Chromatin
chromatin
Chromatin Assembly and Disassembly
Mediator Complex
Locus Control Region

The Cellular and Molecular Bases of Vertebrate Lens Regeneration

Henry, J. J., Jan 1 2003, In : International Review of Cytology. 228, p. 195-265 71 p.

Research output: Contribution to journalArticle

Lenses
Vertebrates
Regeneration
Fibroblast Growth Factors
Retinoids

Thiol-reactive luminescent lanthanide chelates: Part 2

Ge, P. & Selvin, P. R., Sep 1 2003, In : Bioconjugate Chemistry. 14, 5, p. 870-876 7 p.

Research output: Contribution to journalArticle

Iodoacetamide
Lanthanoid Series Elements
Rare earth elements
Sulfhydryl Compounds
ethylenediamine

Transcriptional response elements in the promoter of CYP6B1, an insect P450 gene regulated by plant chemicals

Petersen, R. A., Niamsup, H., Berenbaum, M. R. & Schuler, M. A., Feb 17 2003, In : Biochimica et Biophysica Acta - General Subjects. 1619, 3, p. 269-282 14 p.

Research output: Contribution to journalArticle

Insect Genes
Methoxsalen
Chemical plants
Response Elements
Transcription
2004

Activation of mTOR signaling by novel fluoromethylene phosphonate analogues of phosphatidic acid

Xu, Y., Fang, Y., Chen, J. & Prestwich, G. D., Mar 22 2004, In : Bioorganic and Medicinal Chemistry Letters. 14, 6, p. 1461-1464 4 p.

Research output: Contribution to journalArticle

Organophosphonates
Phosphatidic Acids
Sirolimus
Chemical activation
Ribosomal Protein S6 Kinases

Automated Microscopy Identifies Estrogen Receptor Subdomains with Large-Scale Chromatin Structure Unfolding Activity

Carpenter, A. E., Ashouri, A. & Belmont, A. S., Apr 1 2004, In : Cytometry Part A. 58, 2, p. 157-166 10 p.

Research output: Contribution to journalArticle

Estrogen Receptors
Chromatin
Microscopy
Steroid Receptors
Glucocorticoids

Biochemical and genetic interaction between the fragile X mental retardation protein 3nd the microRNA pathway

Jin, P., Zarnescu, D. C., Ceman, S. S., Nakamoto, M., Mowrey, J., Jongens, T. A., Nelson, D. L., Moses, K. & Warren, S. T., Feb 1 2004, In : Nature Neuroscience. 7, 2, p. 113-117 5 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
MicroRNAs
Molecular Biology
Ligands
Fragile X Syndrome

Carbostyril derivatives as antenna molecules for luminescent lanthanide chelates

Ge, P. & Selvin, P. R., Sep 1 2004, In : Bioconjugate Chemistry. 15, 5, p. 1088-1094 7 p.

Research output: Contribution to journalArticle

Lanthanoid Series Elements
Pentetic Acid
Rare earth elements
Antennas
Derivatives

Characterization and evolution of furanocoumarin-inducible cytochrome P450s in the parsnip webworm, Depressaria pastinacella

Li, W., Zangerl, A. R., Schuler, M. A. & Berenbaum, M. R., Dec 2004, In : Insect Molecular Biology. 13, 6, p. 603-613 11 p.

Research output: Contribution to journalArticle

Depressaria pastinacella
Pastinaca
psoralens
Cytochromes
cytochromes
NADPH-Ferrihemoprotein Reductase
Lipid bilayers
Lipid Bilayers
Arabidopsis
Cytochrome P-450 Enzyme System

Comparative genomics of rice and arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot

Nelson, D. R., Schuler, M. A., Paquette, S. M., Werck-Reichhart, D. & Bak, S., Jun 1 2004, In : Plant physiology. 135, 2, p. 756-772 17 p.

Research output: Contribution to journalArticle

Pseudogenes
pseudogenes
Genomics
Magnoliopsida
Liliopsida
Methoxsalen
Pheromones
allelochemicals
Transcription
cytochrome P-450

Differential large-scale chromatin compaction and intranuclear positioning of transcribed versus nontranscribed transgene arrays containing β-globin regulatory sequences

Dietzel, S., Zolghadr, K., Hepperger, C. & Belmont, A. S., Sep 1 2004, In : Journal of cell science. 117, 19, p. 4603-4614 12 p.

Research output: Contribution to journalArticle

Globins
Transgenes
Chromatin
Chromosome Positioning
Chromosomes
Suprachiasmatic Nucleus
hamsters
Cricetinae
physiology
oscillation

Early regeneration genes: Building a molecular profile for shared expression in cornea-lens transdifferentiation and hindlimb regeneration in Xenopus laevis

Wolfe, A. D., Crimmins, G., Cameron, J. A. & Henry, J. J., Aug 1 2004, In : Developmental Dynamics. 230, 4, p. 615-629 15 p.

Research output: Contribution to journalArticle

Xenopus laevis
Hindlimb
Cornea
Lenses
Regeneration

Embryonic expression of pre-initiation DNA replication factors in Xenopus laevis

Walter, B. E. & Henry, J. J., Nov 1 2004, In : Gene Expression Patterns. 5, 1, p. 81-89 9 p.

Research output: Contribution to journalArticle

Xenopus laevis
DNA Replication
Pronephros
Branchial Region
Proliferating Cell Nuclear Antigen

Identification of variable amino acids in the SRS1 region of CYP6B1 modulating furanocoumarin metabolism

Pan, L., Wen, Z., Baudry, J., Berenbaum, M. R. & Schuler, M. A., Feb 1 2004, In : Archives of Biochemistry and Biophysics. 422, 1, p. 31-41 11 p.

Research output: Contribution to journalArticle

Heme
Metabolism
Amino Acids
Insects
Hydrogen

Inductive interactions and embryonic equivalence groups in a basal metazoan, the ctenophore Mnemiopsis leidyi

Henry, J. J. & Martindale, M. Q., Jan 2004, In : Evolution and Development. 6, 1, p. 17-24 8 p.

Research output: Contribution to journalArticle

Ctenophora
Mnemiopsis leidyi
metazoan
locomotion
cleavage

Kinesin Walks Hand-Over-Hand

Yildiz, A., Tomishige, M., Vale, R. D. & Selvin, P. R., Jan 30 2004, In : Science. 303, 5658, p. 676-678 3 p.

Research output: Contribution to journalArticle

Kinesin
Hand
Microtubules
Adenosine Triphosphate
Coloring Agents

Melatonin desensitizes endogenous MT2 melatonin receptors in the rat suprachiasmatic nucleus: Relevance for defining the periods of sensitivity of the mammalian circadian clock to melatonin

Gerdin, M. J., Masana, M. I., Rivera-Bermúdez, M. A., Hudson, R. L., Earnest, D. J., Gillette, M. U. & Dubocovich, M. L., Nov 1 2004, In : FASEB Journal. 18, 14, p. 1646-1656 11 p.

Research output: Contribution to journalArticle

Melatonin MT2 Receptor
Circadian Clocks
Suprachiasmatic Nucleus
melatonin
Melatonin
Methoxsalen
Pheromones
Insecticides
Cytochrome P-450 Enzyme System
Zea mays

Molecular profiling: Gene expression reveals discrete phases of lens induction and development in Xenopus laevis

Walter, B. E., Tian, Y., Garlisch, A. K., Carinato, M. E., Elkins, M. B., Wolfe, A. D., Schaefer, J. J., Perry, K. J. & Henry, J. J., Mar 24 2004, In : Molecular Vision. 10, p. 186-198 13 p.

Research output: Contribution to journalArticle

Xenopus laevis
Gene Expression Profiling
Lenses
Genes
Ectoderm

Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin

Yildiz, A., Park, H., Safer, D., Yang, Z., Chen, L. Q., Selvin, P. R. & Sweeney, H. L., Sep 3 2004, In : Journal of Biological Chemistry. 279, 36, p. 37223-37226 4 p.

Research output: Contribution to journalArticle

Actins
Hand
Fluorophores
Optical Imaging
Calmodulin

Nanometer localization of single fluorescent proteins: Evidence that myosin V walks hand-over-hand via telemark configuration

Snyder, G. E., Sakamoto, T., Hammer, J. A., Sellers, J. R. & Selvin, P. R., Sep 2004, In : Biophysical journal. 87, 3, p. 1776-1783 8 p.

Research output: Contribution to journalArticle

Myosin Type V
Myosins
Hand
Proteins
Actin Cytoskeleton

Nanometre localization of single ReAsH molecules

Park, H., Hanson, G. T., Duff, S. R. & Selvin, P. R., Dec 1 2004, In : Journal of Microscopy. 216, 3, p. 199-205 7 p.

Research output: Contribution to journalArticle

cysteinylcysteine
Calmodulin
Photons
Coloring Agents
Observation

Polarity and proliferation are controlled by distinct signaling pathways downstream of PI3-kinase in breast epithelial tumor cells

Liu, H., Radisky, D. C., Wang, F. & Bissell, M. J., Feb 16 2004, In : Journal of Cell Biology. 164, 4, p. 603-612 10 p.

Research output: Contribution to journalArticle

Phosphatidylinositol 3-Kinase
Phosphatidylinositol 3-Kinases
Epithelial Cells
Breast Neoplasms
Phenotype

Protein kinase G type II is required for night-to-day progression of the mammalian circadian clock

Tischkau, S. A., Mitchell, J. W., Pace, L. A., Barnes, J. W., Barnes, J. A. & Gillette, M. L., Aug 19 2004, In : Neuron. 43, 4, p. 539-549 11 p.

Research output: Contribution to journalArticle

Cyclic GMP-Dependent Protein Kinases
Circadian Clocks
Messenger RNA
Suprachiasmatic Nucleus
Oligodeoxyribonucleotides

Purification and Analyses of Histone H1 Variants and H1 Posttranslational Modifications

Mizzen, C. A., Feb 4 2004, In : Methods in enzymology. 375, p. 278-297 20 p.

Research output: Contribution to journalArticle

Capillary electrophoresis
Biochemistry
Phosphorylation
Poly(ADP-ribose) Polymerases
Ubiquitin

Regulation of peroxisome proliferator-activated receptor-γ activity by mammalian target of rapamycin and amino acids in adipogenesis

Kim, J. E. & Chen, J., Nov 1 2004, In : Diabetes. 53, 11, p. 2748-2756 9 p.

Research output: Contribution to journalArticle

Adipogenesis
Peroxisome Proliferator-Activated Receptors
Sirolimus
Amino Acids
Food

Single-molecule high-resolution imaging with photobleaching

Gordon, M. P., Ha, T. & Selvin, P. R., Apr 27 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 17, p. 6462-6465 4 p.

Research output: Contribution to journalArticle

Photobleaching
Coloring Agents
Fluorescence Resonance Energy Transfer
Fluorescent Dyes
Single Nucleotide Polymorphism
Insect Proteins
flavone
Cytochrome P-450 Enzyme System
Pheromones
Diazinon

The cell lineage of the polyplacophoran, Chaetopleura apiculata: Variation in the spiralian program and implications for molluscan evolution

Henry, J. J., Okusu, A. & Martindale, M. Q., Aug 1 2004, In : Developmental Biology. 272, 1, p. 145-160 16 p.

Research output: Contribution to journalArticle

Cell Lineage
Polyplacophora
Mollusca
Larva
Cephalopoda
Ecdysterone
Methoxsalen
ecdysterone
5' Untranslated Regions
5' untranslated regions

Upstream binding factor association induces large-scale chromatin decondensation

Chen, D., Belmont, A. S. & Huang, S., Oct 19 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 42, p. 15106-15111 6 p.

Research output: Contribution to journalArticle

Chromatin
Chromatin Assembly and Disassembly
Ribosomal DNA
Lac Repressors
Spatio-Temporal Analysis

Visualization of early chromosome condensation: A hierarchical folding, axial glue model of chromosome structure

Kireeva, N., Lakonishok, M., Kireev, I., Hirano, T. & Belmont, A. S., Sep 13 2004, In : Journal of Cell Biology. 166, 6, p. 775-785 11 p.

Research output: Contribution to journalArticle

Chromosome Structures
Prophase
Adhesives
Chromosomes
Chromosomes, Human, Pair 2
2005

A retinoic acid binding cytochrome P450: CYP120A1 from Synechocystis sp. PCC 6803

Ke, N., Baudry, J., Makris, T. M., Schuler, M. A. & Sligar, S., Apr 1 2005, In : Archives of Biochemistry and Biophysics. 436, 1, p. 110-120 11 p.

Research output: Contribution to journalArticle

Synechocystis
Tretinoin
Cytochrome P-450 Enzyme System
Genes
Cloning

Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome

Thimmapuram, J., Duan, H., Liu, L. & Schuler, M. A., Feb 1 2005, In : RNA. 11, 2, p. 128-138 11 p.

Research output: Contribution to journalArticle

Intergenic DNA
Arabidopsis
Open Reading Frames
Complementary DNA
Genome

Cell Biology: Kinesin and dynein move a peroxisome in vivo: A tug-of-war or coordinated movement?

Kural, C., Kim, H., Syed, S., Goshima, G., Gelfand, V. I. & Selvin, P. R., Jun 3 2005, In : Science. 308, 5727, p. 1469-1472 4 p.

Research output: Contribution to journalArticle

Dyneins
Kinesin
Peroxisomes
Cell Biology
Cytoplasmic Dyneins

Chromatin dynamics in interphase cells revealed by tracking in a two-photon excitation microscope

Levi, V., Ruan, Q. Q., Plutz, M., Belmont, A. S. & Gratton, E., Dec 2005, In : Biophysical journal. 89, 6, p. 4275-4285 11 p.

Research output: Contribution to journalArticle

Cell Tracking
Interphase
Photons
Chromatin
Lac Repressors

Common effects of acidic activators on large-scale chromatin structure and transcription

Carpenter, A. E., Memedula, S., Plutz, M. J. & Belmont, A. S., Feb 1 2005, In : Molecular and cellular biology. 25, 3, p. 958-968 11 p.

Research output: Contribution to journalArticle

Chromatin
Peptides
Activator Appliances
Transcriptional Activation
Viral Proteins

Differential expression and evolution of the arabidopsis CYP86A subfamily

Duan, H. & Schuler, M. A., Dec 1 2005, In : Plant physiology. 137, 3, p. 1067-1081 15 p.

Research output: Contribution to journalArticle

Mixed Function Oxygenases
Arabidopsis
fatty acids
Fatty Acids
Seedlings