Research Output 1972 2019

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2014

Spiralian model systems

Henry, J. J., Jan 1 2014, In : International Journal of Developmental Biology. 58, 6-8, p. 389-401 13 p.

Research output: Contribution to journalArticle

Ecology
Molecular Biology
Life History Traits

Stable small quantum dots for synaptic receptor tracking on live neurons

Cai, E., Ge, P., Lee, S. H., Jeyifous, O., Wang, Y., Liu, Y., Wilson, K. M., Lim, S. J., Baird, M. A., Stone, J. E., Lee, K. Y., Davidson, M. W., Chung, H. J., Schulten, K., Smith, A. M., Green, W. N. & Selvin, P. R., Nov 10 2014, In : Angewandte Chemie - International Edition. 53, 46, p. 12484-12488 5 p.

Research output: Contribution to journalArticle

Neurotransmitter Receptor
Semiconductor quantum dots
Neurons
AMPA Receptors
Functional groups

Stoichiometry and assembly of mTOR complexes revealed by single-molecule pulldown

Jain, A., Arauz, E., Aggarwal, V., Ikon, N., Chen, J. & Ha, T., Dec 16 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 50, p. 17833-17838 6 p.

Research output: Contribution to journalArticle

Sirolimus
Raptors
Dimerization
Fluorescence Microscopy
Phosphotransferases

Temporal patterning of neuroblasts controls notch-mediated cell survival through regulation of hid or reaper

Bertet, C., Li, X., Erclik, T., Cavey, M., Wells, B. & Desplan, C., Aug 28 2014, In : Cell. 158, 5, p. 1173-1186 14 p.

Research output: Contribution to journalArticle

Neurons
Cell Survival
Cells
Optics
Neurology

Toward intelligent synthetic neural circuits: Directing and accelerating neuron cell growth by self-rolled-up silicon nitride microtube array

Froeter, P., Huang, Y., Cangellaris, O. V., Huang, W., Dent, E. W., Gillette, M. L., Williams, J. C. & Li, X., Nov 25 2014, In : ACS Nano. 8, 11, p. 11108-11117 10 p.

Research output: Contribution to journalArticle

Cell growth
Silicon nitride
neurons
silicon nitrides
Neurons
2013

3D super-resolution imaging with blinking quantum dots

Wang, Y., Fruhwirth, G., Cai, E., Ng, T. & Selvin, P. R., Nov 13 2013, In : Nano letters. 13, 11, p. 5233-5241 9 p.

Research output: Contribution to journalArticle

blinking
Semiconductor quantum dots
quantum dots
Imaging techniques
Photobleaching
Head
Mollusca
Body Patterning
Embryonic Organizers
Platyhelminths

A reciprocal translocation dissects roles of Pax6 alternative promoters and upstream regulatory elements in the development of pancreas, brain, and eye

Elso, C., Lu, X., Weisner, P. A., Thompson, H. L., Skinner, A., Carver, E. & Stubbs, L. J., Sep 1 2013, In : Genesis. 51, 9, p. 630-646 17 p.

Research output: Contribution to journalArticle

Pancreas
Phenotype
Brain
Lacrimal Apparatus
Retinal Ganglion Cells

Cationic, helical polypeptide-based gene delivery for IMR-90 fibroblasts and human embryonic stem cells

Yen, J., Zhang, Y., Gabrielson, N. P., Yin, L., Guan, L., Chaudhury, I., Lu, H., Wang, F. & Cheng, J., Jul 2013, In : Biomaterials Science. 1, 7, p. 719-727 9 p.

Research output: Contribution to journalArticle

Polypeptides
Fibroblasts
Stem cells
Polyethylene glycols
Genes

Cytochrome P450 Genes from the Sacred Lotus Genome

Nelson, D. R. & Schuler, M. A., Sep 1 2013, In : Tropical Plant Biology. 6, 2-3, p. 138-151 14 p.

Research output: Contribution to journalArticle

Nelumbo
Lotus
cytochrome P-450
Cytochrome P-450 Enzyme System
Genome

Distinct amino acid-sensing mTOR pathways regulate skeletal myogenesis

Yoon, M. S. & Chen, J., Dec 1 2013, In : Molecular biology of the cell. 24, 23, p. 3754-3763 10 p.

Research output: Contribution to journalArticle

Muscle Development
Sirolimus
Amino Acids
1-Phosphatidylinositol 4-Kinase
Aminoacylation

Duration of rapamycin treatment has differential effects on metabolism in mice

Fang, Y., Westbrook, R., Hill, C., Boparai, R. K., Arum, O., Spong, A., Wang, F., Javors, M. A., Chen, J., Sun, L. Y. & Bartke, A., Mar 5 2013, In : Cell Metabolism. 17, 3, p. 456-462 7 p.

Research output: Contribution to journalArticle

Sirolimus
Life Expectancy
Metabolome
Oxygen Consumption
Insulin Resistance

Expression of pluripotency factors in larval epithelia of the frog Xenopus: Evidence for the presence of cornea epithelial stem cells

Perry, K. J., Thomas, A. G. & Henry, J. J., Feb 15 2013, In : Developmental Biology. 374, 2, p. 281-294 14 p.

Research output: Contribution to journalArticle

Xenopus
Anura
Cornea
Stem Cells
Epithelium

Flt3L is a novel regulator of skeletal myogenesis

Ge, Y., Waldemer, R. J., Nalluri, R., Nuzzi, P. D. & Chen, J., Sep 9 2013, In : Journal of cell science. 126, 15, p. 3370-3379 10 p.

Research output: Contribution to journalArticle

Muscle Development
Phosphotransferases
Ligands
Myoblasts
p120 GTPase Activating Protein

FSGS3/CD2AP is a barbed-end capping protein that stabilizes actin and strengthens adherens junctions

Tang, V. & Brieher, W. M., Dec 9 2013, In : Journal of Cell Biology. 203, 5, p. 815-833 19 p.

Research output: Contribution to journalArticle

Actin Capping Proteins
Adherens Junctions
Focal Segmental Glomerulosclerosis
Actins
Adhesives

Gene expression profiling reveals the heterogeneous transcriptional activity of Oct3/4 and its possible interaction with Gli2 in mouse embryonic stem cells

Li, Y., Drnevich, J., Akraiko, T., Band, M. R., Li, D., Wang, F., Matoba, R. & Tanaka, T. S., Nov 1 2013, In : Genomics. 102, 5-6, p. 456-467 12 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Puromycin
Pluripotent Stem Cells
Genes
Venus

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R. R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In : Genome biology. 14, 5, R41.

Research output: Contribution to journalArticle

Nelumbo
Nelumbo nucifera
Lotus
genome
Genome

Gravity persistent signal 1 (GPS1) reveals novel cytochrome P450s involved in Gravitropism

Withers, J. C., Shipp, M. J., Rupasinghe, S. G., Sukumar, P., Schuler, M. A., Muday, G. K. & Wyatt, S. E., Jan 1 2013, In : American journal of botany. 100, 1, p. 183-193 11 p.

Research output: Contribution to journalArticle

Gravitropism
gravitropism
Gravitation
Cytochromes
cytochromes

Histone H4 deacetylation facilitates 53BP1 DNA damage signaling and double-strand break repair

Hsiao, K. Y. & Mizzen, C. A., Jun 1 2013, In : Journal of Molecular Cell Biology. 5, 3, p. 157-165 9 p.

Research output: Contribution to journalArticle

Histones
DNA Damage
Methyltransferases
Acetylation
Histone Deacetylase Inhibitors
Honey
Bees
Immunity
Up-Regulation
Pollen

In vivo optical trapping indicates kinesin's stall force is reduced by dynein during intracellular transport

Blehm, B. H., Schroer, T. A., Trybus, K. M., Chemla, Y. R. & Selvin, P. R., Feb 26 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3381-3386 6 p.

Research output: Contribution to journalArticle

Optical Tweezers
Dyneins
Kinesin
Cytoplasmic Dyneins
In Vitro Techniques

Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB

Tripathi, V., Shen, Z., Chakraborty, A., Giri, S., Freier, S. M., Wu, X., Zhang, Y., Gorospe, M., Prasanth, S. G., Lal, A. & Kannanganattu, P. K., Apr 15 2013, In : PLoS genetics. 9, 3, e1003368.

Research output: Contribution to journalArticle

Long Noncoding RNA
Cell Cycle Checkpoints
RNA
cell cycle
Cell Cycle

Mammalian target of rapamycin and Rictor control neutrophil chemotaxis by regulating Rac/Cdc42 activity and the actin cytoskeleton

He, Y., Li, D., Cook, S. L., Yoon, M. S., Kapoor, A., Rao, C. V., Kenis, P. J. A., Chen, J. & Wang, F., Nov 1 2013, In : Molecular biology of the cell. 24, 21, p. 3369-3380 12 p.

Research output: Contribution to journalArticle

Chemotaxis
Sirolimus
Actin Cytoskeleton
Neutrophils
Actins

Mechanistic target of rapamycin controls homeostasis of adipogenesis

Yoon, M. S., Zhang, C., Sun, Y., Schoenherr, C. J. & Chen, J., Aug 1 2013, In : Journal of Lipid Research. 54, 8, p. 2166-2173 8 p.

Research output: Contribution to journalArticle

Adipogenesis
Sirolimus
Homeostasis
Peroxisome Proliferator-Activated Receptors
CCAAT-Enhancer-Binding Proteins

Motor domain phosphorylation modulates kinesin-1 transport

DeBerg, H. A., Blehm, B. H., Sheung, J., Thompson, A. R., Bookwalter, C. S., Torabi, S. F., Schroer, T. A., Berger, C. L., Lu, Y., Trybus, K. M. & Selvin, P. R., Nov 8 2013, In : Journal of Biological Chemistry. 288, 45, p. 32612-32621 10 p.

Research output: Contribution to journalArticle

Kinesin
Phosphorylation
Microtubules
Protein Isoforms
Neurodegenerative diseases

N-cadherin regulates spatially polarized signals through distinct p120ctn and β-catenin-dependent signalling pathways

Ouyang, M., Lu, S., Kim, T., Chen, C. E., Seong, J., Leckband, D. E., Wang, F., Reynolds, A. B., Schwartz, M. A. & Wang, Y., Apr 10 2013, In : Nature communications. 4, 1589.

Research output: Contribution to journalArticle

Catenins
1-Phosphatidylinositol 4-Kinase
Cadherins
Phosphatidylinositols
myosins

Pin1 promotes histone H1 dephosphorylation and stabilizes its binding to chromatin

Raghuram, N., Strickfaden, H., McDonald, D., Williams, K., Fang, H., Mizzen, C. A., Hayes, J. J., Th'ng, J. & Hendzel, M. J., Oct 25 2013, In : Journal of Cell Biology. 203, 1, p. 57-71 15 p.

Research output: Contribution to journalArticle

Histones
Chromatin
Phosphorylation
Peptidylprolyl Isomerase
RNA Polymerase II

Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus

Lee, J. E., Zamdborg, L., Southey, B. R., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. L., Kelleher, N. L. & Sweedler, J. V., Feb 1 2013, In : Journal of Proteome Research. 12, 2, p. 585-593 9 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Rats
Peptides
Optic Chiasm
Circadian Clocks

Reversal of gene dysregulation in cultured cytotrophoblasts reveals possible causes of preeclampsia

Zhou, Y., Gormley, M. J., Hunkapiller, N. M., Kapidzic, M., Stolyarov, Y., Feng, V., Nishida, M., Drake, P. M., Bianco, K., Wang, F., McMaster, M. T. & Fisher, S. J., Jul 1 2013, In : Journal of Clinical Investigation. 123, 7, p. 2862-2872 11 p.

Research output: Contribution to journalArticle

Trophoblasts
Pre-Eclampsia
Genes
Placenta
Mothers

Rice P450 reductases differentially affect P450-mediated metabolism in bacterial expression systems

Park, S., Kim, Y. S., Rupasinghe, S. G., Schuler, M. A. & Back, K., Mar 1 2013, In : Bioprocess and Biosystems Engineering. 36, 3, p. 325-331 7 p.

Research output: Contribution to journalArticle

Trans-Cinnamate 4-Monooxygenase
Metabolism
Oxidoreductases
Cloning
Escherichia coli

RNAi Screen Reveals Potentially Novel Roles of Cytokines in Myoblast Differentiation

Ge, Y., Waldemer, R. J., Nalluri, R., Nuzzi, P. D. & Chen, J., Jul 2 2013, In : PloS one. 8, 7, e68068.

Research output: Contribution to journalArticle

myoblasts
Myoblasts
RNA Interference
cytokines
Cytokines

Signals from the Brainstem Sleep/Wake Centers Regulate Behavioral Timing via the Circadian Clock

Abbott, S. M., Arnold, J. M., Chang, Q., Miao, H., Ota, N., Cecala, C., Gold, P. E., Sweedler, J. V. & Gillette, M. L., Aug 12 2013, In : PloS one. 8, 8, e70481.

Research output: Contribution to journalArticle

Circadian Clocks
Suprachiasmatic Nucleus
brain stem
sleep
circadian rhythm
Molecular modeling
Cytochromes
cytochromes
Mixed Function Oxygenases
toxin

Temporal patterning of Drosophila medulla neuroblasts controls neural fates

Li, X., Erclik, T., Bertet, C., Chen, Z., Voutev, R., Venkatesh, S., Morante, J., Celik, A. & Desplan, C., Jun 21 2013, In : Nature. 498, 7455, p. 456-462 7 p.

Research output: Contribution to journalArticle

Drosophila
Transcription Factors
Neurons

XPLN is an endogenous inhibitor of mTORC2

Khanna, N., Fang, Y., Yoon, M. S. & Chen, J., Oct 1 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 40, p. 15979-15984 6 p.

Research output: Contribution to journalArticle

Guanine Nucleotide Exchange Factors
Phosphotransferases
TOR complex 2
rho GTP-Binding Proteins
Muscle Proteins

β-Globin cis-elements determine differential nuclear targeting through epigenetic modifications

Bian, Q., Khanna, N., Alvikas, J. & Belmont, A. S., Dec 9 2013, In : Journal of Cell Biology. 203, 5, p. 767-783 17 p.

Research output: Contribution to journalArticle

Bacterial Artificial Chromosomes
Globins
Heterochromatin
Epigenomics
Methylation
2012

Activity-dependent regulation of retinogeniculate signaling by metabotropic glutamate receptors

Govindaiah, G., Wang, T., Gillette, M. L. & Cox, C. L., Sep 12 2012, In : Journal of Neuroscience. 32, 37, p. 12820-12831 12 p.

Research output: Contribution to journalArticle

Metabotropic Glutamate Receptors
Geniculate Bodies
Neurons
Glutamic Acid
Synaptic Transmission

A gain-of-function polymorphism controlling complex traits and fitness in nature

Prasad, K. V. S. K., Song, B. H., Olson-Manning, C., Anderson, J. T., Lee, C. R., Schranz, M. E., Windsor, A. J., Clauss, M. J., Manzaneda, A. J., Naqvi, I., Reichelt, M., Gershenzon, J., Rupasinghe, S. G., Schuler, M. A. & Mitchell-Olds, T., Aug 31 2012, In : Science. 337, 6098, p. 1081-1084 4 p.

Research output: Contribution to journalArticle

Glucosinolates
Herbivory
Internal-External Control
Gene Dosage
Quantitative Trait Loci

Arginine methylation of RNA-binding proteins regulates cell function and differentiation

Blackwell, E. & Ceman, S., Mar 1 2012, In : Molecular reproduction and development. 79, 3, p. 163-175 13 p.

Research output: Contribution to journalArticle

RNA-Binding Proteins
Methylation
Arginine
Cell Differentiation
Germ Cells

Association of modified cytosines and the methylated DNA-binding protein MeCP2 with distinctive structural domains of lampbrush chromatin

Morgan, G. T., Jones, P. & Bellini, M., Dec 1 2012, In : Chromosome Research. 20, 8, p. 925-942 18 p.

Research output: Contribution to journalArticle

5-Methylcytosine
Cytosine
DNA-Binding Proteins
Chromatin
DNA

Biomimetic surface engineering of lanthanide-doped upconversion nanoparticles as versatile bioprobes

Li, L. L., Zhang, R., Yin, L., Zheng, K., Qin, W., Selvin, P. R. & Lu, Y., Jun 18 2012, In : Angewandte Chemie - International Edition. 51, 25, p. 6121-6125 5 p.

Research output: Contribution to journalArticle

Lanthanoid Series Elements
Biomimetics
Rare earth elements
Nanoparticles
Phospholipids

Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons

Wang, T. A., Yu, Y. V., Govindaiah, G., Ye, X., Artinian, L., Coleman, T. P., Sweedler, J. V., Cox, C. L. & Gillette, M. L., Aug 17 2012, In : Science. 337, 6096, p. 839-842 4 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Circadian Rhythm
Neurons
Circadian Clocks
Potassium Channels

Cleavage pattern and fate map of the mesentoblast, 4d, in the gastropod Crepidula: a hallmark of spiralian development

Lyons, D. C., Perry, K. J., Lesoway, M. P. & Henry, J. J., Sep 19 2012, In : EvoDevo. 3, 1, 21.

Research output: Contribution to journalArticle

Gastropoda
gastropod
cleavage
annelid
muscle
Actin Depolymerizing Factors
Actins
Proteins
Actin Cytoskeleton
Depolymerization

Direct detection of adenosine in undiluted serum using a luminescent aptamer sensor attached to a terbium complex

Li, L. L., Ge, P., Selvin, P. R. & Lu, Y., Sep 18 2012, In : Analytical chemistry. 84, 18, p. 7852-7856 5 p.

Research output: Contribution to journalArticle

Terbium
Biosensors
Adenosine
Sensors
Nucleic Acids

Dynamic association of orca with prereplicative complex components regulates dna replication initiation

Shen, Z., Chakraborty, A., Jain, A., Giri, S., Ha, T., Kannanganattu, P. K. & Prasanth, S. G., Aug 1 2012, In : Molecular and cellular biology. 32, 15, p. 3107-3120 14 p.

Research output: Contribution to journalArticle

Geminin
Origin Recognition Complex
DNA Replication
Chromatin
Multiprotein Complexes

Ecologically appropriate xenobiotics induce cytochrome P450s in Apis Mellifera

Johnson, R. M., Mao, W., Pollock, H. S., Niu, G., Schuler, M. A. & Berenbaum, M. R., Feb 3 2012, In : PloS one. 7, 2, e31051.

Research output: Contribution to journalArticle

Bees
Xenobiotics
Cytochromes
xenobiotics
cytochromes

Evolutionary toxicogenomics: Diversification of the Cyp12d1 and Cyp12d3 genes in Drosophila species

McDonnell, C. M., King, D., Comeron, J. M., Li, H., Sun, W., Berenbaum, M. R., Schuler, M. A. & Pittendrigh, B. R., Jun 1 2012, In : Journal of Molecular Evolution. 74, 5-6, p. 281-296 16 p.

Research output: Contribution to journalArticle

toxicogenomics
Toxicogenetics
Drosophila
Drosophila melanogaster
gene

Expanding the cellular molecular chaperone network through the ubiquitous cochaperones

Echtenkamp, F. J. & Freeman, B. C., Mar 1 2012, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1823, 3, p. 668-673 6 p.

Research output: Contribution to journalArticle

HSP90 Heat-Shock Proteins
Molecular Chaperones
Heat-Shock Proteins
Proteins
Homeostasis