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2004

Activation of mTOR signaling by novel fluoromethylene phosphonate analogues of phosphatidic acid

Xu, Y., Fang, Y., Chen, J. & Prestwich, G. D., Mar 22 2004, In : Bioorganic and Medicinal Chemistry Letters. 14, 6, p. 1461-1464 4 p.

Research output: Contribution to journalArticle

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Wong, G. K. S., Liu, B., Wang, J., Zhang, Y., Yang, X., Zhang, Z., Meng, Q., Zhou, J., Li, D., Zhang, J., Ni, P., Li, S., Ran, L., Li, H., Zhang, J., Li, R., Li, S., Zheng, H., Lin, W., Li, G. & 94 others, Wang, X., Zhao, W., Li, J., Ye, C., Dai, M., Ruan, J., Zhou, Y., Li, Y., He, X., Zhang, Y., Wang, J., Huang, X., Tong, W., Chen, J., Ye, J., Chen, C., Wei, N., Li, G., Dong, L., Lan, F., Sun, Y., Zhang, Z., Yang, Z., Yu, Y., Huang, Y., He, D., Xi, Y., Wei, D., Qi, Q., Li, W., Shi, J., Wang, M., Xie, F., Wang, J., Zhang, X., Wang, P., Zhao, Y., Li, N., Yang, N., Dong, W., Hu, S., Zeng, C., Zheng, W., Hao, B., Hillier, L. D. W., Yang, S. P., Warren, W. C., Wilson, R. K., Brandström, M., Ellegren, H., Crooijmans, R. P. M. A., van der Poel, J. J., Bovenhuis, H., Groenen, M. A. M., Ovcharenko, I., Gordon, L., Stubbs, L., Lucas, S., Glavina, T., Aerts, A., Kaiser, P., Rothwell, L., Young, J. R., Rogers, S., Walker, B. A., van Hateren, A., Kaufman, J., Bumstead, N., Lamont, S. J., Zhou, H., Hocking, P. M., Morrice, D., de Koning, D. J., Law, A., Bartley, N., Burt, D. W., Hunt, H., Cheng, H. H., Gunnarsson, U., Wahlberg, P., Andersson, L., Kindlund, E., Tammi, M. T., Andersson, B., Webber, C., Ponting, C. P., Overton, I. M., Boardman, P. E., Tang, H., Hubbard, S. J., Wilson, S. A., Yu, J., Wang, J. & Yang, H. M., Dec 9 2004, In : Nature. 432, 7018, p. 717-722 6 p.

Research output: Contribution to journalArticle

Automated Microscopy Identifies Estrogen Receptor Subdomains with Large-Scale Chromatin Structure Unfolding Activity

Carpenter, A. E., Ashouri, A. & Belmont, A. S., Apr 1 2004, In : Cytometry Part A. 58, 2, p. 157-166 10 p.

Research output: Contribution to journalArticle

Biochemical and genetic interaction between the fragile X mental retardation protein 3nd the microRNA pathway

Jin, P., Zarnescu, D. C., Ceman, S., Nakamoto, M., Mowrey, J., Jongens, T. A., Nelson, D. L., Moses, K. & Warren, S. T., Feb 1 2004, In : Nature Neuroscience. 7, 2, p. 113-117 5 p.

Research output: Contribution to journalArticle

Carbostyril derivatives as antenna molecules for luminescent lanthanide chelates

Ge, P. & Selvin, P. R., Sep 1 2004, In : Bioconjugate Chemistry. 15, 5, p. 1088-1094 7 p.

Research output: Contribution to journalArticle

Characterization and evolution of furanocoumarin-inducible cytochrome P450s in the parsnip webworm, Depressaria pastinacella

Li, W., Zangerl, A. R., Schuler, M. A. & Berenbaum, M. R., Dec 1 2004, In : Insect Molecular Biology. 13, 6, p. 603-613 11 p.

Research output: Contribution to journalArticle

Comparative genomics of rice and arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot

Nelson, D. R., Schuler, M. A., Paquette, S. M., Werck-Reichhart, D. & Bak, S., Jun 1 2004, In : Plant physiology. 135, 2, p. 756-772 17 p.

Research output: Contribution to journalArticle

Differential large-scale chromatin compaction and intranuclear positioning of transcribed versus nontranscribed transgene arrays containing β-globin regulatory sequences

Dietzel, S., Zolghadr, K., Hepperger, C. & Belmont, A. S., Sep 1 2004, In : Journal of cell science. 117, 19, p. 4603-4614 12 p.

Research output: Contribution to journalArticle

Dynamics of pre-replication complex proteins during the cell division cycle

Prasanth, S. G., Méndez, J., Prasanth, K. V. & Stillman, B., Jan 29 2004, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 359, 1441, p. 7-16 10 p.

Research output: Contribution to journalArticle

Early regeneration genes: Building a molecular profile for shared expression in cornea-lens transdifferentiation and hindlimb regeneration in Xenopus laevis

Wolfe, A. D., Crimmins, G., Cameron, J. A. & Henry, J. J., Aug 1 2004, In : Developmental Dynamics. 230, 4, p. 615-629 15 p.

Research output: Contribution to journalArticle

ECR Browser: A tool for visualizing and accessing data from comparisons of multiple vertebrate genomes

Ovcharenko, I., Nobrega, M. A., Loots, G. G. & Stubbs, L., Jul 1 2004, In : Nucleic acids research. 32, WEB SERVER ISS., p. W280-W286

Research output: Contribution to journalArticle

Embryonic expression of pre-initiation DNA replication factors in Xenopus laevis

Walter, B. E. & Henry, J. J., Nov 1 2004, In : Gene Expression Patterns. 5, 1, p. 81-89 9 p.

Research output: Contribution to journalArticle

Expression of Protooncogene c-kit Receptor in Rat Testis and Uniqueness of Extracellular Domain Across the Species with Potential in Molecular Phylogeny

Prasanth, S. G., Chattopadhyay, M., Bhat, K. V. & Ali, S., Jan 1 2004, In : DNA and Cell Biology. 23, 1, p. 35-43 9 p.

Research output: Contribution to journalArticle

Fascin-mediated propulsion of Listeria monocytogenes independent of frequent nucleation by the Arp2/3 complex

Brieher, W. M., Coughlin, M. & Mitchison, T. J., Apr 26 2004, In : Journal of Cell Biology. 165, 2, p. 233-242 10 p.

Research output: Contribution to journalArticle

Finishing the euchromatic sequence of the human genome

International Human Genome Sequencing Consortium, Oct 21 2004, In : Nature. 431, 7011, p. 931-945 15 p.

Research output: Contribution to journalArticle

Open Access

From silencing to gene expression: Real-time analysis in single cells

Janicki, S. M., Tsukamoto, T., Salghetti, S. E., Tansey, W. P., Sachidanandam, R., Prasanth, K. V., Ried, T., Shav-Tal, Y., Bertrand, E., Singer, R. H. & Spector, D. L., Mar 5 2004, In : Cell. 116, 5, p. 683-698 16 p.

Research output: Contribution to journalArticle

Heightened susceptibility to chronic gastritis, hyperplasia and metaplasia in Kcnq1 mutant mice

Elso, C. M., Lu, X., Culiat, C. T., Rutledge, J. C., Cacheiro, N. L. A., Generoso, W. M. & Stubbs, L. J., Nov 15 2004, In : Human molecular genetics. 13, 22, p. 2813-2821 9 p.

Research output: Contribution to journalArticle

Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance

Prasanth, S. G., Prasanth, K. V., Siddiqui, K., Spector, D. L. & Stillman, B., Jul 7 2004, In : EMBO Journal. 23, 13, p. 2651-2663 13 p.

Research output: Contribution to journalArticle

Hypophosphorylated SR splicing factors transiently localize around active nucleolar organizing regions in telophase daughter nuclei

Bubulya, P. A., Prasanth, K. V., Deerinck, T. J., Gerlich, D., Beaudouin, J., Ellisman, M. H., Ellenberg, J. & Spector, D. L., Oct 11 2004, In : Journal of Cell Biology. 167, 1, p. 51-63 13 p.

Research output: Contribution to journalArticle

Identification of variable amino acids in the SRS1 region of CYP6B1 modulating furanocoumarin metabolism

Pan, L., Wen, Z., Baudry, J., Berenbaum, M. R. & Schuler, M. A., Feb 1 2004, In : Archives of Biochemistry and Biophysics. 422, 1, p. 31-41 11 p.

Research output: Contribution to journalArticle

Inductive interactions and embryonic equivalence groups in a basal metazoan, the ctenophore Mnemiopsis leidyi

Henry, J. Q. & Martindale, M. Q., Jan 1 2004, In : Evolution and Development. 6, 1, p. 17-24 8 p.

Research output: Contribution to journalArticle

Interpreting mammalian evolution using Fugu genome comparisons

Ovcharenko, I., Stubbs, L. & Loots, G. G., Nov 1 2004, In : Genomics. 84, 5, p. 890-895 6 p.

Research output: Contribution to journalArticle

Kinesin Walks Hand-Over-Hand

Yildiz, A., Tomishige, M., Vale, R. D. & Selvin, P. R., Jan 30 2004, In : Science. 303, 5658, p. 676-678 3 p.

Research output: Contribution to journalArticle

Lineage-specific imprinting and evolution of the zinc-finger gene ZIM2

Kim, J., Bergmann, A., Lucas, S., Stone, R. & Stubbs, L., Jul 1 2004, In : Genomics. 84, 1, p. 47-58 12 p.

Research output: Contribution to journalArticle

Melatonin desensitizes endogenous MT2 melatonin receptors in the rat suprachiasmatic nucleus: Relevance for defining the periods of sensitivity of the mammalian circadian clock to melatonin

Gerdin, M. J., Masana, M. I., Rivera-Bermúdez, M. A., Hudson, R. L., Earnest, D. J., Gillette, M. U. & Dubocovich, M. L., Nov 1 2004, In : FASEB Journal. 18, 14, p. 1646-1656 11 p.

Research output: Contribution to journalArticle

Molecular profiling: Gene expression reveals discrete phases of lens induction and development in Xenopus laevis

Walter, B. E., Tian, Y., Garlisch, A. K., Carinato, M. E., Elkins, M. B., Wolfe, A. D., Schaefer, J. J., Perry, K. J. & Henry, J. J., Mar 24 2004, In : Molecular Vision. 10, p. 186-198 13 p.

Research output: Contribution to journalArticle

Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin

Yildiz, A., Park, H., Safer, D., Yang, Z., Chen, L. Q., Selvin, P. R. & Sweeney, H. L., Sep 3 2004, In : Journal of Biological Chemistry. 279, 36, p. 37223-37226 4 p.

Research output: Contribution to journalArticle

Nanometer localization of single fluorescent proteins: Evidence that myosin V walks hand-over-hand via telemark configuration

Snyder, G. E., Sakamoto, T., Hammer, J. A., Sellers, J. R. & Selvin, P. R., Sep 2004, In : Biophysical journal. 87, 3, p. 1776-1783 8 p.

Research output: Contribution to journalArticle

Nanometre localization of single ReAsH molecules

Park, H., Hanson, G. T., Duff, S. R. & Selvin, P. R., Dec 1 2004, In : Journal of Microscopy. 216, 3, p. 199-205 7 p.

Research output: Contribution to journalArticle

Polarity and proliferation are controlled by distinct signaling pathways downstream of PI3-kinase in breast epithelial tumor cells

Liu, H., Radisky, D. C., Wang, F. & Bissell, M. J., Feb 16 2004, In : Journal of Cell Biology. 164, 4, p. 603-612 10 p.

Research output: Contribution to journalArticle

Protein kinase G type II is required for night-to-day progression of the mammalian circadian clock

Tischkau, S. A., Mitchell, J. W., Pace, L. A., Barnes, J. W., Barnes, J. A. & Gillette, M. U., Aug 19 2004, In : Neuron. 43, 4, p. 539-549 11 p.

Research output: Contribution to journalArticle

Purification and Analyses of Histone H1 Variants and H1 Posttranslational Modifications

Mizzen, C. A., Feb 4 2004, In : Methods in enzymology. 375, p. 278-297 20 p.

Research output: Contribution to journalArticle

Regulation of peroxisome proliferator-activated receptor-γ activity by mammalian target of rapamycin and amino acids in adipogenesis

Kim, J. E. & Chen, J., Nov 1 2004, In : Diabetes. 53, 11, p. 2748-2756 9 p.

Research output: Contribution to journalArticle

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

International Chicken Genome Sequencing Consortium, Dec 9 2004, In : Nature. 432, 7018, p. 695-716 22 p.

Research output: Contribution to journalArticle

Open Access

Single-molecule high-resolution imaging with photobleaching

Gordon, M. P., Ha, T. & Selvin, P. R., Apr 27 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 17, p. 6462-6465 4 p.

Research output: Contribution to journalArticle

The cell lineage of the polyplacophoran, Chaetopleura apiculata: Variation in the spiralian program and implications for molluscan evolution

Henry, J. Q., Okusu, A. & Martindale, M. Q., Aug 1 2004, In : Developmental Biology. 272, 1, p. 145-160 16 p.

Research output: Contribution to journalArticle

The DNA sequence and biology of human chromosome 19

Grimwood, J., Gordon, L. A., Olsen, A., Terry, A., Schmutz, J., Lamerdin, J., Hellsten, U., Goodstein, D., Couronne, O., Tran-Gyamil, M., Aerts, A., Altherr, M., Ashworth, L., Bajorek, E., Black, S., Branscomb, E., Caenepeel, S., Carrano, A., Caoile, C., Chan, Y. M. & 78 others, Christensen, M., Cleland, C. A., Copeland, A., Dalin, E., Dehal, P., Denys, M., Detter, J. C., Escobar, J., Flowers, D., Fotopolus, D., Garcia, C., Georgescu, A. M., Glavina, T., Gomez, M., Gonzales, E., Groza, M., Hammon, N., Hawkins, T., Haydu, L., Ho, I., Huang, W., Israni, S., Jett, J., Kadner, K., Kimball, H., Kobayashi, A., Larionov, V., Leem, S. H., Lopez, F., Lou, Y., Lowry, S., Malfatti, S., Martinez, D., McCready, P., Medina, C., Morgan, J., Nelson, K., Nolan, M., Ovcharenko, I., Pitluck, S., Pollard, M., Popkie, A. P., Predki, P., Quan, G., Ramirez, L., Rash, S., Retterer, J., Rodriguez, A., Rogers, S., Salamov, A., Salazar, A., She, X., Smith, D., Slezak, T., Solovyev, V., Thayer, N., Tice, H., Tsai, M., Ustaszewska, A., Vo, N., Wagner, M., Wheeler, J., Wu, K., Xie, G., Yang, J., Dubchak, I., Furey, T. S., DeJong, P., Dickson, M., Gordon, D., Eichler, E. E., Pennacchio, L. A., Richardson, P., Stubbs, L., Rokhsar, D. S., Myers, R. M., Rubin, E. M. & Lucas, S. M., Apr 1 2004, In : Nature. 428, 6982, p. 529-535 7 p.

Research output: Contribution to journalArticle

Upstream binding factor association induces large-scale chromatin decondensation

Chen, D., Belmont, A. S. & Huang, S., Oct 19 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 42, p. 15106-15111 6 p.

Research output: Contribution to journalArticle

Visualization of early chromosome condensation: A hierarchical folding, axial glue model of chromosome structure

Kireeva, N., Lakonishok, M., Kireev, I., Hirano, T. & Belmont, A. S., Sep 13 2004, In : Journal of Cell Biology. 166, 6, p. 775-785 11 p.

Research output: Contribution to journalArticle

zPicture: Dynamic alignment and visualization tool for analyzing conservation profiles

Ovcharenko, I., Loots, G. G., Hardison, R. C., Miller, W. & Stubbs, L., Mar 1 2004, In : Genome Research. 14, 3, p. 472-477 6 p.

Research output: Contribution to journalArticle

2003

A microcontroller-based failsafe for single photon counting modules

Gordon, M. P. & Selvin, P. R., Feb 1 2003, In : Review of Scientific Instruments. 74, 2, p. 1150-1152 3 p.

Research output: Contribution to journalArticle

A modified nodal scheme for the time-dependent, incompressible Navier-Stokes equations

Wang, F. & Rizwan-uddin, A., May 1 2003, In : Journal of Computational Physics. 187, 1, p. 168-196 29 p.

Research output: Contribution to journalArticle

An actin-dependent conformational change in myosin

Xiao, M., Reifenberger, J. G., Wells, A. L., Baldacchino, C., Chen, L. Q., Ge, P., Sweeney, H. L. & Selvin, P. R., May 1 2003, In : Nature Structural Biology. 10, 5, p. 402-408 7 p.

Research output: Contribution to journalArticle

Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase

Cheung, W. L., Ajiro, K., Samejima, K., Kloc, M., Cheung, P., Mizzen, C. A., Beeser, A., Etkin, L. D., Chernoff, J., Earnshaw, W. C. & Allis, C. D., May 16 2003, In : Cell. 113, 4, p. 507-517 11 p.

Research output: Contribution to journalArticle