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Fluorescence imaging with one nanometer accuracy: Application to molecular motors

Yildiz, A. & Selvin, P. R., Jul 1 2005, In : Accounts of chemical research. 38, 7, p. 574-582 9 p.

Research output: Contribution to journalArticle

Myosin Type V
Fluorescence
Imaging techniques
Kinesin
Fluorophores

Fluorescence imaging with one-nanometer accuracy (fiona)

Wang, Y., Cai, E., Sheung, J., Lee, S. H., Teng, K. W. & Selvin, P. R., Sep 26 2014, In : Journal of Visualized Experiments. 91, e51774.

Research output: Contribution to journalArticle

Optical Imaging
Fluorescence
Imaging techniques
Quantum Dots
Semiconductor quantum dots

Fluorescence resonance energy transfer

Selvin, P. R., Jan 1 1995, In : Methods in enzymology. 246, C, p. 300-334 35 p.

Research output: Contribution to journalArticle

Fluorescence Resonance Energy Transfer
Energy Transfer
Fluorescence
Energy transfer
Biochemistry

FMRP phosphorylation reveals an immediate-early signaling pathway triggered by group I mGluR and mediated by PP2A

Narayanan, U., Nalavadi, V., Nakamoto, M., Pallas, D. C., Ceman, S., Bassell, G. J. & Warren, S. T., Dec 26 2007, In : Journal of Neuroscience. 27, 52, p. 14349-14357 9 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Protein Phosphatase 2
Metabotropic Glutamate Receptors
Phosphorylation
TOR Serine-Threonine Kinases

Forkhead box protein O1 negatively regulates skeletal myocyte differentiation through degradation of mammalian target of rapamycin pathway components

Wu, A. L., Kim, J. H., Zhang, C., Unterman, T. G. & Chen, J., Mar 1 2008, In : Endocrinology. 149, 3, p. 1407-1414 8 p.

Research output: Contribution to journalArticle

Skeletal Muscle Fibers
Sirolimus
Insulin-Like Growth Factor II
Muscle Development
Phosphatidylinositol 3-Kinase

Formation of Salt Bridges Mediates Internal Dimerization of Myosin VI Medial Tail Domain

Kim, H. J., Hsin, J., Liu, Y., Selvin, P. R. & Schulten, K. J., Nov 10 2010, In : Structure. 18, 11, p. 1443-1449 7 p.

Research output: Contribution to journalArticle

Dimerization
Salts
Molecular Dynamics Simulation
Static Electricity
myosin VI

Fragile X Mental Retardation Protein FMRP binds mRNAs in the nucleus

Kim, M., Bellini, M. & Ceman, S., Jan 1 2009, In : Molecular and cellular biology. 29, 1, p. 214-228 15 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Messenger RNA
Simian virus 40
Cell Nucleus Active Transport
RNA-Binding Proteins

Fragile X protein family member FXR1P is regulated by microRNAs

Cheever, A., Blackwell, E. & Ceman, S., Aug 1 2010, In : RNA. 16, 8, p. 1530-1539 10 p.

Research output: Contribution to journalArticle

MicroRNAs
Proteins
3' Untranslated Regions
Seeds
Luciferases

FRAP-dependent serine phosphorylation of IRS-1 inhibits IRS-1 tyrosine phosphorylation

Hartman, M. E., Villela-Bach, M., Chen, J. & Freund, G. G., Jan 1 2001, In : Biochemical and Biophysical Research Communications. 280, 3, p. 776-781 6 p., 94214.

Research output: Contribution to journalArticle

TOR Serine-Threonine Kinases
Insulin Receptor Substrate Proteins
Phosphorylation
Serine
Tyrosine
Actin Capping Proteins
Adherens Junctions
Focal Segmental Glomerulosclerosis
Actins
Adhesives

Full-length myosin VI dimerizes and moves processively along actin filaments upon monomer clustering

Park, H., Ramamurthy, B., Travaglia, M., Safer, D., Chen, L. Q., Franzini-Armstrong, C., Selvin, P. R. & Sweeney, H. L., Feb 3 2006, In : Molecular cell. 21, 3, p. 331-336 6 p.

Research output: Contribution to journalArticle

Actin Cytoskeleton
Cluster Analysis
Dimerization
Hand
Kinesin

Functional and prognostic significance of long non-coding RNA MALAT1 as a metastasis driver in ER negative lymph node negative breast cancer

Jadaliha, M., Zong, X., Malakar, P., Ray, T., Singh, D. K., Freier, S. M., Jensen, T., Prasanth, S. G., Karni, R., Ray, P. S. & Prasanth, K. V., Jan 1 2016, In : Oncotarget. 7, 26, p. 40418-40436 19 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
Lymph Nodes
Breast Neoplasms
Neoplasm Metastasis
Triple Negative Breast Neoplasms

Functional CpG methylation system in a social insect

Wang, Y., Jorda, M., Jones, P. L., Maleszka, R., Ling, X., Robertson, H. M., Mizzen, C. A., Peinado, M. A. & Robinson, G. E., Oct 27 2006, In : Science. 314, 5799, p. 645-647 3 p.

Research output: Contribution to journalArticle

Honey
Bees
DNA Methylation
Methylation
Insects

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. L., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journalArticle

Circadian Clocks
Neuropeptides
Suprachiasmatic Nucleus
Clocks
Optics

Function and evolution of C2H2 zinc finger arrays

Stubbs, L. J., Sun, Y. & Caetano-Anolles, D., Jan 1 2011, In : Sub-Cellular Biochemistry. 52, p. 75-94 20 p.

Research output: Contribution to journalArticle

Zinc
Transcription Factors
Nucleotide Motifs
Proteins
DNA

Gain, loss and divergence in primate Zinc-Finger genes: A rich resource for evolution of gene regulatory differences between species

Nowick, K., Fields, C., Gernat, T., Caetano-Anolles, D., Kholina, N. & Stubbs, L., Jul 1 2011, In : PloS one. 6, 6, e21553.

Research output: Contribution to journalArticle

zinc finger motif
Zinc Fingers
Regulator Genes
regulator genes
Primates

Gene expression profiles of lens regeneration and development in Xenopus laevis

Malloch, E. L., Perry, K. J., Fukui, L., Johnson, V. R., Wever, J., Beck, C. W., King, M. W. & Henry, J. J., Sep 21 2009, In : Developmental Dynamics. 238, 9, p. 2340-2356 17 p.

Research output: Contribution to journalArticle

Xenopus laevis
Transcriptome
Lenses
Regeneration
Genes

Gene expression profiling reveals the heterogeneous transcriptional activity of Oct3/4 and its possible interaction with Gli2 in mouse embryonic stem cells

Li, Y., Drnevich, J., Akraiko, T., Band, M. R., Li, D., Wang, F., Matoba, R. & Tanaka, T. S., Nov 1 2013, In : Genomics. 102, 5-6, p. 456-467 12 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Puromycin
Pluripotent Stem Cells
Genes
Venus

Generation and characterization of heritable reciprocal translocations in mice

Stubbs, L., Carver, E. A., Cacheiro, N. L. A., Shelby, M. & Generoso, W., Dec 1997, In : Methods: A Companion to Methods in Enzymology. 13, 4, p. 397-408 12 p.

Research output: Contribution to journalArticle

Genes
Mutagenesis
Mutation
Inborn Genetic Diseases
Aneuploidy

Generation and characterization of novel antibodies highly selective for phosphorylated linked histone H1 in Tetrahymena and HeLa cells

Lu, M. J., Dadd, C. A., Mizzen, C. A., Perry, C. A., McLachlan, D. R., Annunziato, A. T. & Allis, C. D., Apr 1 1994, In : Chromosoma. 103, 2, p. 111-121 11 p.

Research output: Contribution to journalArticle

Tetrahymena
HeLa Cells
Histones
Antibodies
Mitosis

Generation of melanocytes from induced pluripotent stem cells

Yang, R., Jiang, M., Kumar, S. M., Xu, T., Wang, F., Xiang, L. & Xu, X., Dec 2011, In : Journal of Investigative Dermatology. 131, 12, p. 2458-2466 9 p.

Research output: Contribution to journalArticle

Induced Pluripotent Stem Cells
Melanocytes
Stem cells
Fibroblasts
Tail

Gene regulation by low level UV-B radiation: Identification by DNA array analysis

Brosché, M., Schuler, M. A., Kalbina, I., Connor, L. & Strid, Å., Sep 1 2002, In : Photochemical and Photobiological Sciences. 1, 9, p. 656-664 9 p.

Research output: Contribution to journalArticle

gene expression
Oligonucleotide Array Sequence Analysis
Gene expression
genes
deoxyribonucleic acid

Gene-specific characterization of human histone H2B by electron capture dissociation

Siuti, N., Roth, M. J., Mizzen, C. A., Kelleher, N. L. & Pesavento, J. J., Feb 1 2006, In : Journal of Proteome Research. 5, 2, p. 233-239 7 p.

Research output: Contribution to journalArticle

Histones
Genes
Cells
Electrons
Butyric Acid

Genetic testing and autism: Tutorial for communication sciences and disorders

DeThorne, L. S. & Ceman, S., Jul 1 2018, In : Journal of Communication Disorders. 74, p. 61-73 13 p.

Research output: Contribution to journalArticle

Communication Disorders
communication disorder
communication sciences
Genetic Testing
Autistic Disorder

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In : Genome biology. 14, 5, R41.

Research output: Contribution to journalArticle

Nelumbo
Nelumbo nucifera
Lotus
genome
Genome

Genomic organization and expressed sequences of the mouse extended h-2k region

Lai, F., Stubbs, L., Lehrach, H., Huang, Y., Yeom, Y. & Artzt, K., Sep 15 1994, In : Genomics. 23, 2, p. 338-343 6 p.

Research output: Contribution to journalArticle

Major Histocompatibility Complex
Lethal Genes
Genes
Restriction Mapping
Immune System

GFP tagging of budding yeast chromosomes reveals that protein-protein interactions can mediate sister chromatid cohesion

Straight, A. F., Belmont, A. S., Robinett, C. C. & Murray, A. W., Dec 1996, In : Current Biology. 6, 12, p. 1599-1608 10 p.

Research output: Contribution to journalArticle

Saccharomycetales
Chromatids
chromatids
protein-protein interactions
Chromosomes

Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction

Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In : Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.

Research output: Contribution to journalArticle

Ice Cover
Glaciers
Hydrogel
Microchannels
Hydrogels

Global assessment of combinatorial post-translational modification of core histones in yeast using contemporary mass spectrometry: LYS4 trimethylation correlates with degree of acetylation on the same H3 tail

Jiang, L., Smith, J. N., Anderson, S. L., Ma, P., Mizzen, C. A. & Kelleher, N. L., Sep 21 2007, In : Journal of Biological Chemistry. 282, 38, p. 27923-27934 12 p.

Research output: Contribution to journalArticle

Acetylation
Post Translational Protein Processing
Histones
Yeast
Mass spectrometry

Global Functional Map of the p23 Molecular Chaperone Reveals an Extensive Cellular Network

Echtenkamp, F. J., Zelin, E., Oxelmark, E., Woo, J. I., Andrews, B. J., Garabedian, M. & Freeman, B. C., Jul 22 2011, In : Molecular cell. 43, 2, p. 229-241 13 p.

Research output: Contribution to journalArticle

Molecular Chaperones
Yeasts
Validation Studies
Mutagens
Ribosomes

Glutathione-S-transferase μ and theta gene polymorphisms as new risk factors of atopic bronchial asthma

Wang, F., Herzmark, P., Weiner, O. D., Srinivasan, S., Servant, G. & Bourne, H. R., Jan 1 2002, In : Journal of Molecular Medicine. 80, 1, p. 39-43 5 p.

Research output: Contribution to journalArticle

Glutathione Transferase
Asthma
Genes
Phase I Metabolic Detoxication
isoleucylvaline

Glycerolipid signals alter mTOR complex 2 (mTORC2) to diminish insulin signaling

Zhang, C., Wendel, A. A., Keogh, M. R., Harris, T. E., Chen, J. & Coleman, R. A., Jan 31 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 5, p. 1667-1672 6 p.

Research output: Contribution to journalArticle

Acyltransferases
Phosphatidic Acids
Insulin
Hepatocytes
Diglycerides

Graphene oxide substrates with N-cadherin stimulates neuronal growth and intracellular transport

Qin, E. C., Kandel, M. E., Liamas, E., Shah, T. B., Kim, C., Kaufman, C. D., Zhang, Z. J., Popescu, G., Gillette, M. L., Leckband, D. E. & Kong, H. J., May 2019, In : Acta Biomaterialia. 90, p. 412-423 12 p.

Research output: Contribution to journalArticle

Graphite
Cadherins
Oxides
Graphene
Neurons

Gravity persistent signal 1 (GPS1) reveals novel cytochrome P450s involved in Gravitropism

Withers, J. C., Shipp, M. J., Rupasinghe, S. G., Sukumar, P., Schuler, M. A., Muday, G. K. & Wyatt, S. E., Jan 1 2013, In : American journal of botany. 100, 1, p. 183-193 11 p.

Research output: Contribution to journalArticle

Gravitropism
gravitropism
Gravitation
Cytochromes
cytochromes

Growth differentiation factor-15 encodes a novel microRNA 3189 that functions as a potent regulator of cell death

Jones, M. F., Ling Li, X., Subramanian, M., Shabalina, S. A., Hara, T., Zhu, Y., Huang, J., Yang, Y., Wakefield, L. M., Prasanth, K. V. & Lal, A., Oct 9 2015, In : Cell Death and Differentiation. 22, 10, p. 1641-1653 13 p.

Research output: Contribution to journalArticle

Growth Differentiation Factor 15
MicroRNAs
Primates
Cell Death
Apoptosis

Guiding neuron development with planar surface gradients of substrate cues deposited using microfluidic devices

Millet, L. J., Stewart, M. E., Nuzzo, R. G. & Gillette, M. U., 2010, In : Lab on a chip. 10, 12, p. 1525-1535 11 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
Neurons
Cues
Laminin

Helicobacter pylori Infection Modulates Host Cell Metabolism through VacA-Dependent Inhibition of mTORC1

Kim, I. J., Lee, J., Oh, S. J., Yoon, M. S., Jang, S. S., Holland, R. L., Reno, M. L., Hamad, M. N., Maeda, T., Chung, H. J., Chen, J. & Blanke, S. R., May 9 2018, In : Cell Host and Microbe. 23, 5, p. 583-593.e8

Research output: Contribution to journalArticle

Helicobacter Infections
Helicobacter pylori
Autophagy
Amino Acids
Mitochondria

Helicoverpa zea CYP6B8 and CYP321A1: Different molecular solutions to the problem of metabolizing plant toxins and insecticides

Rupasinghe, S. G., Wen, Z., Chiu, T. L. & Schuler, M. A., Dec 1 2007, In : Protein Engineering, Design and Selection. 20, 12, p. 615-624 10 p.

Research output: Contribution to journalArticle

Insecticides
Mixed Function Oxygenases
Zea mays
Oxygen
Molecules

Hepatic Hdac3 promotes gluconeogenesis by repressing lipid synthesis and sequestration

Sun, Z., Miller, R. A., Patel, R. T., Chen, J., Dhir, R., Wang, H., Zhang, D., Graham, M. J., Unterman, T. G., Shulman, G. I., Sztalryd, C., Bennett, M. J., Ahima, R. S., Birnbaum, M. J. & Lazar, M. A., Jun 1 2012, In : Nature Medicine. 18, 6, p. 934-942 9 p.

Research output: Contribution to journalArticle

Gluconeogenesis
Lipids
Liver
Insulin
Insulin Resistance

Hepatocyte growth factor switches orientation of polarity and mode of movement during morphogenesis of multicellular epithelial structures

Yu, W., O'Brien, L. E., Wang, F., Bourne, H., Mostov, K. E. & Zegers, M. M. P., Feb 1 2003, In : Molecular biology of the cell. 14, 2, p. 748-763 16 p.

Research output: Contribution to journalArticle

Hepatocyte Growth Factor
Morphogenesis
Epithelial Cells
rho-Associated Kinases
Madin Darby Canine Kidney Cells

Hereditary diabetes insipidus: an immunohistochemical study of the hypothalamus and pituitary gland

Bergeron, C., Kovacs, K., Ezrin, C. & Mizzen, C., Feb 1 1991, In : Acta Neuropathologica. 81, 3, p. 345-348 4 p.

Research output: Contribution to journalArticle

Diabetes Insipidus
Pituitary Gland
Vasopressins
Hypothalamus
Posterior Pituitary Gland

High-efficiency induction of neural conversion in human ESCs and human induced pluripotent stem cells with a single chemical inhibitor of transforming growth factor beta superfamily receptors

Zhou, J., Su, P., Li, D., Tsang, S., Duan, E. & Wang, F., Oct 1 2010, In : Stem Cells. 28, 10, p. 1741-1750 10 p.

Research output: Contribution to journalArticle

Transforming Growth Factor beta Receptors
Induced Pluripotent Stem Cells
Efficiency
Morphogenesis
Activins

High-efficiency motor neuron differentiation from human pluripotent stem cells and the function of Islet-1

Qu, Q., Li, D., Louis, K. R., Li, X., Yang, H., Sun, Q., Crandall, S. R., Tsang, S., Zhou, J., Cox, C. L., Cheng, J. & Wang, F., Mar 13 2014, In : Nature communications. 5, 3449.

Research output: Contribution to journalArticle

Pluripotent Stem Cells
stem cells
Motor Neurons
Stem cells
neurons

High-pressure treatment of polytene chromosomes improves structural resolution

Novikov, D. V., Kireev, I. & Belmont, A. S., Jun 1 2007, In : Nature Methods. 4, 6, p. 483-485 3 p.

Research output: Contribution to journalArticle

Polytene Chromosomes
Chromosomes
Cytology
Pressure
Cell Biology

High-resolution fate map of the snail Crepidula fornicata: The origins of ciliary bands, nervous system, and muscular elements

Hejnol, A., Martindale, M. Q. & Henry, J. Q., May 1 2007, In : Developmental Biology. 305, 1, p. 63-76 14 p.

Research output: Contribution to journalArticle

Snails
Cell Lineage
Nervous System
Blastomeres
Gastropoda

High-yield expression and purification of isotopically labeled cytochrome P450 monooxygenases for solid-state NMR spectroscopy

Rupasinghe, S. G., Duan, H., Frericks Schmidt, H. L., Berthold, D. A., Rienstra, C. M. & Schuler, M. A., Dec 1 2007, In : Biochimica et Biophysica Acta - Biomembranes. 1768, 12, p. 3061-3070 10 p.

Research output: Contribution to journalArticle

Mixed Function Oxygenases
Cytochrome P-450 Enzyme System
Nuclear magnetic resonance spectroscopy
Purification
Magnetic Resonance Spectroscopy

Histone acetyltransferase activity is conserved between yeast and human GCN5 and is required for complementation of growth and transcriptional activation

Wang, L., Mizzen, C. A., Ying, C., Candau, R., Barlev, N., Brownell, J., Allis, C. D. & Berger, S. L., Jan 1 1997, In : Molecular and cellular biology. 17, 1, p. 519-527 9 p.

Research output: Contribution to journalArticle

Histone Acetyltransferases
Transcriptional Activation
Yeasts
Growth
Nucleosomes

Histone acetyltransferase Hbo1: Catalytic activity, cellular abundance, and links to primary cancers

Iizuka, M., Takahashi, Y., Mizzen, C. A., Cook, R. G., Fujita, M., Allis, C. D., Frierson, H. F., Fukusato, T. & Smith, M. M., May 1 2009, In : Gene. 436, 1-2, p. 108-114 7 p.

Research output: Contribution to journalArticle

Histone Acetyltransferases
DNA Replication
Chromatin
Neoplasms
Replication Origin

Histone acetyltransferases: Preparation of substrates and assay procedures

Mizzen, C. A., Brownell, J. E., Cook, R. G. & Allis, C. D., Jan 1 1999, In : Methods in enzymology. 304, p. 675-696 22 p.

Research output: Contribution to journalArticle

Histone Acetyltransferases
Assays
Substrates

Histone H1 and H3 dephosphorylation are differentially regulated by radiation-induced signal transduction pathways

Guo, C. Y., Mizzen, C., Wang, Y. & Larner, J. M., Oct 15 2000, In : Cancer Research. 60, 20, p. 5667-5672 6 p.

Research output: Contribution to journalArticle

Ionizing Radiation
Histones
Signal Transduction
Radiation
Ataxia Telangiectasia