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Plant intron sequences: Evidence for distinct groups of introns

Hanley, B. A. & Schuler, M. A., Jul 25 1988, In : Nucleic acids research. 16, 14, p. 7159-7176 18 p.

Research output: Contribution to journalArticle

Introns
RNA Splice Sites
RNA Splicing
Consensus Sequence
HeLa Cells

PLD1 Regulates mTOR Signaling and Mediates Cdc42 Activation of S6K1

Fang, Y., Park, I. H., Wu, A. L., Du, G., Huang, P., Frohman, M. A., Walker, S. J., Brown, H. A. & Chen, J., Dec 2 2003, In : Current Biology. 13, 23, p. 2037-2044 8 p.

Research output: Contribution to journalArticle

Ribosomal Protein S6 Kinases
Phospholipase D
phospholipase D
Sirolimus
phosphotransferases (kinases)

PLD regulates myoblast differentiation through the mTOR-IGF2 pathway

Yoon, M. S. & Chen, J., Feb 1 2008, In : Journal of cell science. 121, 3, p. 282-289 8 p.

Research output: Contribution to journalArticle

Phospholipase D
Myoblasts
Sirolimus
Muscle Development
Skeletal Myoblasts

Polarity and proliferation are controlled by distinct signaling pathways downstream of PI3-kinase in breast epithelial tumor cells

Liu, H., Radisky, D. C., Wang, F. & Bissell, M. J., Feb 16 2004, In : Journal of Cell Biology. 164, 4, p. 603-612 10 p.

Research output: Contribution to journalArticle

Phosphatidylinositol 3-Kinase
Phosphatidylinositol 3-Kinases
Epithelial Cells
Breast Neoplasms
Phenotype

Polarization effect on position accuracy of fluorophore localization

Enderlein, J., Toprak, E. & Selvin, P. R., Jan 1 2006, In : Optics Express. 14, 18, p. 8111-8120 10 p.

Research output: Contribution to journalArticle

numerical aperture
polarization
molecules
pixels
position errors

Polypurine-repeat-containing RNAs: A novel class of long non-coding RNA in mammalian cells

Zheng, R., Shen, Z., Tripathi, V., Xuan, Z., Freier, S. M., Bennett, C. F., Prasanth, S. G. & Prasanth, K. V., Nov 1 2010, In : Journal of cell science. 123, 21, p. 3734-3744 11 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
RNA
Nuclear Matrix-Associated Proteins
Telophase
Trinucleotide Repeats

Precise characterization of human histones in the H2A gene family by top down mass spectrometry

Boyne, M. T., Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Feb 1 2006, In : Journal of Proteome Research. 5, 2, p. 248-253 6 p.

Research output: Contribution to journalArticle

Gene encoding
Post Translational Protein Processing
HeLa Cells
Histones
Mass spectrometry

Preferential dimethylation of histone H4 lysine 20 by Suv4-20

Yang, H., Pesavento, J. J., Starnes, T. W., Cryderman, D. E., Wallrath, L. L., Kelleher, N. L. & Mizzen, C. A., May 2 2008, In : Journal of Biological Chemistry. 283, 18, p. 12085-12092 8 p.

Research output: Contribution to journalArticle

Histones
Lysine
Methylation
Drosophila
Heterochromatin

Probing cellular protein complexes using single-molecule pull-down

Jain, A., Liu, R., Ramani, B., Arauz, E., Ishitsuka, Y., Ragunathan, K., Park, J., Chen, J., Xiang, Y. K. & Ha, T., May 26 2011, In : Nature. 473, 7348, p. 484-488 5 p.

Research output: Contribution to journalArticle

Proteins
Macromolecular Substances
Tissue Extracts
Cyclic AMP-Dependent Protein Kinases
Fluorescence Microscopy

Probing the Heterogeneity of Protein Kinase Activation in Cells by Super-resolution Microscopy

Zhang, R., Fruhwirth, G. O., Coban, O., Barrett, J. E., Burgoyne, T., Lee, S. H., Simonson, P. D., Baday, M., Kholodenko, B. N., Futter, C. E., Ng, T. & Selvin, P. R., Jan 24 2017, In : ACS Nano. 11, 1, p. 249-257 9 p.

Research output: Contribution to journalArticle

Epidermal Growth Factor Receptor
Protein Kinases
Microscopic examination
Mitogen-Activated Protein Kinases
Chemical activation
Anthocidaris
Sea Urchins
Embryonic Structures
Blastomeres
Mesoderm

Prolonged in vivo imaging of Xenopus laevis

Hamilton, P. W. & Henry, J. J., Aug 2014, In : Developmental Dynamics. 243, 8, p. 1011-1019 9 p.

Research output: Contribution to journalArticle

Xenopus laevis
Larva
Anesthetics
Anesthesia
Xenopus

Prosurvival long noncoding RNA PINCR regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3

Chaudhary, R., Gryder, B., Woods, W. S., Subramanian, M., Jones, M. F., Li, X. L., Jenkins, L. M., Shabalina, S. A., Mo, M., Dasso, M., Yang, Y., Wakefield, L. M., Zhu, Y., Frier, S. M., Moriarity, B. S., Prasanth, K. V., Perez-Pinera, P. & Lal, A., Jun 5 2017, In : eLife. 6, e23244.

Research output: Contribution to journalArticle

Long Noncoding RNA
Untranslated RNA
Colorectal Neoplasms
Cells
DNA Damage

Protein kinase G type II is required for night-to-day progression of the mammalian circadian clock

Tischkau, S. A., Mitchell, J. W., Pace, L. A., Barnes, J. W., Barnes, J. A. & Gillette, M. L., Aug 19 2004, In : Neuron. 43, 4, p. 539-549 11 p.

Research output: Contribution to journalArticle

Cyclic GMP-Dependent Protein Kinases
Circadian Clocks
Messenger RNA
Suprachiasmatic Nucleus
Oligodeoxyribonucleotides

Protein phosphatase 2A regulates MPF activity and sister chromatid cohesion in budding yeast

Minshull, J., Straight, A., Rudner, A. D., Dernburg, A. F., Belmont, A. & Murray, A. W., Dec 1996, In : Current Biology. 6, 12, p. 1609-1620 12 p.

Research output: Contribution to journalArticle

maturation-promoting factor
Maturation-Promoting Factor
Protein Phosphatase 2
phosphoprotein phosphatase
Saccharomycetales

Psf2 plays important roles in normal eye development in Xenopus laevis

Walter, B. E., Perry, K. J., Fukui, L., Malloch, E. L., Wever, J. & Henry, J. J., May 19 2008, In : Molecular Vision. 14, p. 906-921 16 p.

Research output: Contribution to journalArticle

Xenopus laevis
Lenses
Morpholinos
Retina
Embryonic Structures

PSIP1/p75 promotes tumorigenicity in breast cancer cells by promoting the transcription of cell cycle genes

Singh, D. K., Gholamalamdari, O., Jadaliha, M., Li, X. L., Lin, Y. C., Zhang, Y., Guang, S., Hashemikhabir, S., Tiwari, S., Zhu, Y. J., Khan, A., Thomas, A., Chakraborty, A., Macias, V., Balla, A. K., Bhargava, R., Janga, S. C., Ma, J., Prasanth, S. G., Lal, A. & 1 others, Kannanganattu, P. K., Oct 1 2017, In : Carcinogenesis. 38, 10, p. 966-975 10 p., bgx062.

Research output: Contribution to journalArticle

Triple Negative Breast Neoplasms
cdc Genes
Breast Neoplasms
RNA Polymerase II
Cell Line

Purification and Analyses of Histone H1 Variants and H1 Posttranslational Modifications

Mizzen, C. A., Feb 4 2004, In : Methods in enzymology. 375, p. 278-297 20 p.

Research output: Contribution to journalArticle

Capillary electrophoresis
Biochemistry
Phosphorylation
Poly(ADP-ribose) Polymerases
Ubiquitin

Pyrularia Thionin Binding to and the Role of Tryptophan-8 in the Enhancement of Phosphatidylserine Domains in Erythrocyte Membranes

Wang, F., Naisbitt, G. H., Vernon, L. P. & Glaser, M., Jan 1 1993, In : Biochemistry. 32, 46, p. 12283-12289 7 p.

Research output: Contribution to journalArticle

Pyrularia
Thionins
Phosphatidylserines
Erythrocyte Membrane
Tryptophan

Quantitative analysis of actin turnover in listeria comet tails: Evidence for catastrophic filament turnover

Kueh, H. Y., Brieher, W. M. & Mitchison, T. J., Oct 6 2010, In : Biophysical journal. 99, 7, p. 2153-2162 10 p.

Research output: Contribution to journalArticle

Listeria
Actin Cytoskeleton
Tail
Actins
Polymers

Quantitative analysis of modified proteins and their positional isomers by tandem mass spectrometry: Human histone H4

Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Jul 1 2006, In : Analytical chemistry. 78, 13, p. 4271-4280 10 p.

Research output: Contribution to journalArticle

Isomers
Histones
Mass spectrometry
Ions
Chemical analysis

Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution

Fei, J., Jadaliha, M., Harmon, T. S., Li, I. T. S., Hua, B., Hao, Q., Holehouse, A. S., Reyer, M., Sun, Q., Freier, S. M., Pappu, R. V., Prasanth, K. V. & Ha, T., Dec 1 2017, In : Journal of cell science. 130, 24, p. 4180-4192 13 p.

Research output: Contribution to journalArticle

Nuclear RNA
RNA
Proteins
Small Nuclear RNA
Lighting

Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus

Lee, J. E., Zamdborg, L., Southey, B. R., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Feb 1 2013, In : Journal of Proteome Research. 12, 2, p. 585-593 9 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Rats
Peptides
Optic Chiasm
Circadian Clocks

Quantum yields of luminescent lanthanide chelates and far-red dyes measured by resonance energy transfer

Xiao, M. & Selvin, P. R., Oct 1 2001, In : Journal of the American Chemical Society. 123, 29, p. 7067-7073 7 p.

Research output: Contribution to journalArticle

Lanthanoid Series Elements
chelate
Energy Transfer
Quantum yield
Rare earth elements

Quercetin-metabolizing CYP6AS enzymes of the pollinator Apis mellifera (Hymenoptera: Apidae)

Mao, W., Rupasinghe, S. G., Johnson, R. M., Zangerl, A. R., Schuler, M. A. & Berenbaum, M. R., Dec 1 2009, In : Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology. 154, 4, p. 427-434 8 p.

Research output: Contribution to journalArticle

Hymenoptera
Honey
Bees
Quercetin
Genes

Rac and Cdc42 play distinct roles in regulating PI(3,4,5)P3 and polarity during neutrophil chemotaxis

Srinivasan, S., Wang, F., Glavas, S., Ott, A., Hofmann, F., Aktories, K., Kalman, D. & Bourne, H. R., Feb 3 2003, In : Journal of Cell Biology. 160, 3, p. 375-385 11 p.

Research output: Contribution to journalArticle

Chemotaxis
Phosphatidylinositols
Actins
Neutrophils
Chemotactic Factors

RACK1 regulates directional cell migration by acting on gβγ at the interface with its effectors PLCβ and PI3Kγ

Chen, S., Lin, F., Myung, E. S., Wang, F., Shen, L. & Hamm, H. E., Sep 1 2008, In : Molecular biology of the cell. 19, 9, p. 3909-3922 14 p.

Research output: Contribution to journalArticle

Phosphatidylinositol 3-Kinase
Type C Phospholipases
Cell Movement
Chemotactic Factors
Chemotaxis

Rapid DNA mapping by fluorescent single molecule detection

Xiao, M., Phong, A., Ha, C., Chan, T. F., Cai, D., Leung, L., Wan, E., Kistler, A. L., DeRisi, J. L., Selvin, P. R. & Kwok, P. Y., Feb 1 2007, In : Nucleic acids research. 35, 3, e16.

Research output: Contribution to journalArticle

DNA
Endonucleases
Human Adenoviruses
Rhinovirus
DNA-Directed DNA Polymerase

Rapid mitogenic regulation of the mTORC1 Inhibitor, DEPTOR, by phosphatidic acid

Yoon, M. S., Rosenberger, C. L., Wu, C., Truong, N., Sweedler, J. V. & Chen, J., May 7 2015, In : Molecular cell. 58, 3, p. 549-556 8 p.

Research output: Contribution to journalArticle

Phosphatidic Acids
Phospholipase D
Unsaturated Fatty Acids
Mitogens
mechanistic target of rapamycin complex 1

Rapid sequence and expression divergence suggest selection for novel function in primate-specific KRAB-ZNF genes

Nowick, K., Hamilton, A. T., Zhang, H. & Stubbs, L., Nov 1 2010, In : Molecular biology and evolution. 27, 11, p. 2606-2617 12 p.

Research output: Contribution to journalArticle

zinc finger motif
Zinc Fingers
primate
Primates
zinc

Raptor and rheb negatively regulate skeletal myogenesis through suppression of insulin receptor substrate 1 (IRS1)

Ge, Y., Yoon, M. S. & Chen, J., Oct 14 2011, In : Journal of Biological Chemistry. 286, 41, p. 35675-35682 8 p.

Research output: Contribution to journalArticle

Raptors
Insulin Receptor Substrate Proteins
Muscle Development
Sirolimus
Phosphorylation

Reactive and bioactive cationic α-helical polypeptide template for nonviral gene delivery

Gabrielson, N. P., Lu, H., Yin, L., Li, D., Wang, F. & Cheng, J., Jan 27 2012, In : Angewandte Chemie - International Edition. 51, 5, p. 1143-1147 5 p.

Research output: Contribution to journalArticle

Polypeptides
Glutamic Acid
Genes
Peptides
Polyethyleneimine
Ctenophora
embryo
Comb and Wattles
Embryonic Development
Embryonic Structures

Recent progress on the mechanisms of embryonic lens formation

Grainger, R. M., Henry, J. J., Saha, M. S. & Servetnick, M., Mar 1992, In : Eye (Basingstoke). 6, 2, p. 117-122 6 p.

Research output: Contribution to journalArticle

Lenses
Ectoderm
Head
Neural Plate
Neural Crest

Reciprocal interactions between β1-integrin and epidermal growth factor receptor in three-dimensional basement membrane breast cultures: A different perspective in epithelial biology

Wang, F., Weaver, V. M., Petersen, O. W., Larabell, C. A., Dedhar, S., Briand, P., Lupu, R. & Bissell, M. J., Dec 8 1998, In : Proceedings of the National Academy of Sciences of the United States of America. 95, 25, p. 14821-14826 6 p.

Research output: Contribution to journalArticle

Epidermal Growth Factor Receptor
Basement Membrane
Integrins
Breast
Morphogenesis
Centrosome
Organelles
Oocytes
RNA
Spisula

Regulation and integrated functions of the actin cytoskeleton

Charras, G. & Brieher, W. M., Mar 15 2016, In : Molecular biology of the cell. 27, 6, 1 p.

Research output: Contribution to journalArticle

Actin Cytoskeleton

Regulation and regeneration in the ctenophore Mnemiopsis leidyi

Henry, J. Q. & Martindale, M. Q., Nov 15 2000, In : Developmental Biology. 227, 2, p. 720-733 14 p.

Research output: Contribution to journalArticle

Ctenophora
Regeneration
Comb and Wattles
Cell Lineage
Embryonic Structures

Regulation and the modification of axial properties in partial embryos of the nemertean, Cerebratulus lacteus

Henry, J. J. & Martindale, M. Q., Jan 1 1997, In : Development Genes and Evolution. 207, 1, p. 42-50 9 p.

Research output: Contribution to journalArticle

Embryonic Structures
Blastomeres
Cell Communication
Larva

Regulation of an insect cytochrome P450 monooxygenase gene (CYP6B1) by aryl hydrocarbon and xanthotoxin response cascades

Brown, R. P., McDonnell, C. M., Berenbaum, M. R. & Schuler, M. A., Sep 26 2005, In : Gene. 358, 1-2, p. 39-52 14 p.

Research output: Contribution to journalArticle

Methoxsalen
Hydrocarbons
Mixed Function Oxygenases
Cytochrome P-450 Enzyme System
Insects
Circadian Clocks
Second Messenger Systems

Regulation of inhibitory synapses by presynaptic D4 dopamine receptors in thalamus

Govindaiah, G., Wang, T., Gillette, M. U., Crandall, S. R. & Cox, C. L., Nov 1 2010, In : Journal of neurophysiology. 104, 5, p. 2757-2765 9 p.

Research output: Contribution to journalArticle

Dopamine D4 Receptors
Thalamic Nuclei
Thalamus
Synapses
Globus Pallidus

Regulation of interleukin-6-induced hepatic insulin resistance by mammalian target of rapamycin through the STAT3-SOCS3 pathway

Kim, J. H., Jae, E. K., Liu, H. Y., Cao, W. & Chen, J., Jan 11 2008, In : Journal of Biological Chemistry. 283, 2, p. 708-715 8 p.

Research output: Contribution to journalArticle

Sirolimus
Insulin Resistance
Interleukin-6
Insulin
Ribosomal Protein S6 Kinases

Regulation of peroxisome proliferator-activated receptor-γ activity by mammalian target of rapamycin and amino acids in adipogenesis

Kim, J. E. & Chen, J., Nov 1 2004, In : Diabetes. 53, 11, p. 2748-2756 9 p.

Research output: Contribution to journalArticle

Adipogenesis
Peroxisome Proliferator-Activated Receptors
Sirolimus
Amino Acids
Food

Regulation of ribosomal S6 kinase 2 by mammalian target of rapamycin

Park, I. H., Bachmann, R., Shirazi, H. & Chen, J., Aug 30 2002, In : Journal of Biological Chemistry. 277, 35, p. 31423-31429 7 p.

Research output: Contribution to journalArticle

Ribosomal Protein S6 Kinases
Sirolimus
Cell Nucleus Active Transport
Chemical activation
S 6

Remarkable substrate-specificity of CYP6AB3 in Depressaria pastinacella, a highly specialized caterpillar

Mao, W., Rupasinghe, S., Zangerl, A. R., Schuler, M. A. & Berenbaum, M. R., Apr 1 2006, In : Insect Molecular Biology. 15, 2, p. 169-179 11 p.

Research output: Contribution to journalArticle

Depressaria pastinacella
psoralens
substrate specificity
Substrate Specificity
insect larvae
Larva
Light
Blastomeres
Embryonic Structures
Luminescent Proteins

Replicating and transcribing on twisted roads of chromatin

Giri, S. & Prasanth, S. G., May 1 2012, In : Briefings in Functional Genomics. 11, 3, p. 188-204 17 p., elr047.

Research output: Contribution to journalArticle

Chromatin
DNA
Histones
DNA Replication
Transcription

Report an abstracts of the third international workshop on human chromosome 19 mapping 1996.

Mohrenweiser, H., Olsen, A., Archibald, A., Beattie, C., Burmeister, M., Lamerdin, J., Lennon, G., Stewart, E., Stubbs, L., Weber, J. L. & Johnson, K., 1996, In : Cytogenetics and cell genetics. 74, 3, p. 161-186 26 p.

Research output: Contribution to journalArticle

Nucleic Acid Sequence Homology
Molecular Sequence Data
Chromosomes, Human, Pair 19
Chromosome Mapping
Human Chromosomes

Report of the third international workshop on human chromosome 19 mapping 1996

Mohrenweiser, H., Olsen, A., Archibald, A., Beattie, C., Burmeister, M., Lamerdin, J., Lennon, G., Stewart, E., Stubbs, L., Weber, J. L. & Johnson, K., Jan 1 1996, In : Cytogenetics and cell genetics. 74, 3, p. 162-181 20 p.

Research output: Contribution to journalArticle

Chromosomes, Human, Pair 19
Chromosome Mapping
Human Chromosomes
Education