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Isolation of murine SPT5 homologue: Completion of the isolation and characterization of human and murine homologues of yeast chromatin structural protein complex SPT4, SPT5, and SPT6

Chiang, P. W., Stubbs, L., Zhang, L. & Kurnit, D. M., Feb 1 1998, In : Genomics. 47, 3, p. 426-428 3 p.

Research output: Contribution to journalArticle

Chromatin
Yeasts
Proteins
Fragile X Mental Retardation Protein
Immune Sera
Proteins
Messenger RNA
Trinucleotide Repeat Expansion

Isolation of a chick cytokeratin cDNA clone indicative of regional specialization in early embryonic ectoderm

Charlebois, T. S., Spencer, D. H., Tarkington, S. K., Henry, J. J. & Grainger, R. M., Feb 17 1990, In : Development. 108, 1, p. 33-45 13 p.

Research output: Contribution to journalArticle

Ectoderm
embryo
Keratins
specialization
clone

Isolation and identification of brain tumor stem cells from human brain neuroepithelial tumors

Fang, J. S., Deng, Y. W., Li, M. C., Chen, F. H., Wang, Y. J., Lu, M., Fang, F., Wu, J., Yang, Z. Y., Zhou, X. Y., Wang, F. & Chen, C., Jan 30 2007, In : National Medical Journal of China. 87, 5, p. 298-303 6 p.

Research output: Contribution to journalArticle

Neuroepithelial Neoplasms
Neoplastic Stem Cells
Brain Neoplasms
Nestin
Neoplasms
methoxsalen
Methoxsalen
Papilio glaucus
Papilionidae
psoralens

Isolation and characterization of a novel gene, xMADML, involved in Xenopus laevis eye development

Elkins, M. B. & Henry, J. J., Jul 1 2006, In : Developmental Dynamics. 235, 7, p. 1845-1857 13 p.

Research output: Contribution to journalArticle

Xenopus laevis
Xenopus
Lenses
Genes
Retina

In vivo visualization of chromosomes using lac operator-repressor binding

Belmont, A. S. & Straight, A. F., Mar 1998, In : Trends in Cell Biology. 8, 3, p. 121-124 4 p.

Research output: Contribution to journalArticle

Lac Repressors
Chromosomes
Repressor Proteins
Chromosome Segregation
Nucleic Acid Repetitive Sequences

In vivo optical trapping indicates kinesin's stall force is reduced by dynein during intracellular transport

Blehm, B. H., Schroer, T. A., Trybus, K. M., Chemla, Y. R. & Selvin, P. R., Feb 26 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3381-3386 6 p.

Research output: Contribution to journalArticle

Optical Tweezers
Dyneins
Kinesin
Cytoplasmic Dyneins
In Vitro Techniques

In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition

Robinett, C. C., Straight, A., Li, G., Willhelm, C., Sudlow, G., Murray, A. & Belmont, A. S., Dec 1 1996, In : Journal of Cell Biology. 135, 6 II, p. 1685-1700 16 p.

Research output: Contribution to journalArticle

Lac Repressors
Chromatin
CHO Cells
Gene Amplification
Chromosomes

In vivo immunogold labeling confirms large-scale chromatin folding motifs

Kireev, I., Lakonishok, M., Liu, W., Joshi, V. N., Powell, R. & Belmont, A. S., Apr 1 2008, In : Nature Methods. 5, 4, p. 311-313 3 p.

Research output: Contribution to journalArticle

Labeling
Electron microscopy
Chromatin
Electron Microscopy
Immunoelectron Microscopy

In vivo HP1 targeting causes large-scale chromatin condensation and enhanced histone lysine methylation

Verschure, P. J., Van Der Kraan, I., De Leeuw, W., Van Der Vlag, J., Carpenter, A. E., Belmont, A. S. & Van Driel, R., Jun 1 2005, In : Molecular and cellular biology. 25, 11, p. 4552-4564 13 p.

Research output: Contribution to journalArticle

Protein Transport
Histones
Methylation
Lysine
Chromatin

In vivo analysis of plant pre-mRNA splicing using an autonomously replicating vector

Mccullough, A. J., Lou, H. & Schuler, M. A., Jun 11 1991, In : Nucleic acids research. 19, 11, p. 3001-3009 9 p.

Research output: Contribution to journalArticle

RNA Precursors
Introns
Recombinant DNA
Genetic Terminator Regions
Geminiviridae

Invariant chain peptides in most HLA-DR molecules of an antigen-processing mutant

Sette, A., Ceman, S., Kubo, R. T., Sakaguchi, K., Appella, E., Hunt, D. F., Davis, T. A., Michel, H., Shabanowitz, J., Rudersdorf, R., Grey, H. M. & DeMars, R., Jan 1 1992, In : Science. 258, 5089, p. 1801-1804 4 p.

Research output: Contribution to journalArticle

Antigen Presentation
HLA-DR Antigens
Peptides
Null Lymphocytes
MHC Class II Genes

Intronic and exonic sequences modulate 5′ splice site selection in plant nuclei

McCullough, A. J. & Schuler, M. A., Sep 25 1996, In : Nucleic acids research. 25, 5, p. 1071-1077 7 p.

Research output: Contribution to journalArticle

RNA Splice Sites
Introns
RNA Precursors
Drosophila
Exons
Ctenophora
Cell Lineage
Mesoderm
Blastomeres
Muscle Cells

Interpreting top-down mass spectra using spectral alignment

Frank, A. M., Pesavento, J. J., Mizzen, C. A., Kelleher, N. L. & Pevzner, P. A., Apr 1 2008, In : Analytical chemistry. 80, 7, p. 2499-2505 7 p.

Research output: Contribution to journalArticle

Proteins
Isomers
Mass spectrometry

Interphase movements of a DNA chromosome region modulated by VP16 transcriptional activator

Tumbar, T. & Belmont, A. S., Feb 15 2001, In : Nature Cell Biology. 3, 2, p. 134-139 6 p.

Research output: Contribution to journalArticle

Chromosome Positioning
Interphase
Chromosomes
DNA
S Phase

Interphase H1 phosphorylation: Regulation and functions in chromatin

Liao, R. & Mizzen, C. A., Mar 1 2016, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1859, 3, p. 476-485 10 p.

Research output: Contribution to journalArticle

Phosphorylation
Interphase
Chromatin
Histones
Transcription

Interphase chromosomes undergo constrained diffusional motion in living cells

Marshall, W. F., Straight, A., Marko, J. F., Swedlow, J., Dernburg, A., Belmont, A., Murray, A. W., Agard, D. A. & Sedat, J. W., Dec 1 1997, In : Current Biology. 7, 12, p. 930-939 10 p.

Research output: Contribution to journalArticle

Interphase
Chromosomes
interphase
Chromatin
chromatin
Interphase
Cell Cycle
Staining and Labeling
Chromatids
DNA Replication

Internal AU-rich elements modulate activity of two competing 3' splice sites in plant nuclei

Merritt, H., McCullough, A. J. & Schuler, M. A., Jan 1 1997, In : Plant Journal. 12, 4, p. 937-943 7 p.

Research output: Contribution to journalArticle

AU Rich Elements
RNA Splice Sites
Introns
introns
uridine

Interhead distance measurements in myosin VI via SHRImP support a simplified hand-over-hand model

Balci, H., Ha, T., Sweeney, H. L. & Selvin, P. R., Jul 2005, In : Biophysical journal. 89, 1, p. 413-417 5 p.

Research output: Contribution to journalArticle

Hand
Head
Cryoelectron Microscopy
Actomyosin
myosin VI

Interactions across Exons Can Influence Splice Site Recognition in Plant Nuclei

McCullough, A. J., Baynton, C. E. & Schuler, M. A., Dec 1 1996, In : Plant Cell. 8, 12, p. 2295-2307 13 p.

Research output: Contribution to journalArticle

RNA Splice Sites
exons
introns
Exons
Introns

Integration of temporal and spatial patterning generates neural diversity

Erclik, T., Li, X., Courgeon, M., Bertet, C., Chen, Z., Baumert, R., Ng, J., Koo, C., Arain, U., Behnia, R., Del Valle Rodriguez, A., Senderowicz, L., Negre, N., White, K. P. & Desplan, C., Jan 19 2017, In : Nature. 541, 7637, p. 365-370 6 p.

Research output: Contribution to journalArticle

Neurons
Neuropil
Automatic Data Processing
Drosophila

Integrated biochemical and mechanical signals regulate multifaceted human embryonic stem cell functions

Li, D., Zhou, J., Wang, L., Shin, M. E., Su, P., Lei, X., Kuang, H., Guo, W., Yang, H., Cheng, L., Tanaka, T. S., Leckband, D. E., Reynolds, A. B., Duan, E. & Wang, F., Nov 1 2010, In : Journal of Cell Biology. 191, 3, p. 631-644 14 p.

Research output: Contribution to journalArticle

Cadherins
Nonmuscle Myosin Type IIA
Physiological Feedback
Intercellular Junctions
Survival

Insights into social insects from the genome of the honeybee Apis mellifera

Weinstock, G. M., Robinson, G. E., Gibbs, R. A., Worley, K. C., Evans, J. D., Maleszka, R., Robertson, H. M., Weaver, D. B., Beye, M., Bork, P., Elsik, C. G., Hartfelder, K., Hunt, G. J., Zdobnov, E. M., Amdam, G. V., Bitondi, M. M. G., Collins, A. M., Cristino, A. S., Lattorff, H. M. G., Lobo, C. H. & 204 others, Moritz, R. F. A., Nunes, F. M. F., Page, R. E., Simões, Z. L. P., Wheeler, D., Carninci, P., Fukuda, S., Hayashizaki, Y., Kai, C., Kawai, J., Sakazume, N., Sasaki, D., Tagami, M., Albert, S., Baggerman, G., Beggs, K. T., Bloch, G., Cazzamali, G., Cohen, M., Drapeau, M. D., Eisenhardt, D., Emore, C., Ewing, M. A., Fahrbach, S. E., Forêt, S., Grimmelikhuijzen, C. J. P., Hauser, F., Hummon, A. B., Huybrechts, J., Jones, A. K., Kadowaki, T., Kaplan, N., Kucharski, R., Leboulle, G., Linial, M., Littleton, J. T., Mercer, A. R., Richmond, T. A., Rodriguez-Zas, S. L., Rubin, E. B., Sattelle, D. B., Schlipalius, D., Schoofs, L., Shemesh, Y., Sweedler, J. V., Velarde, R., Verleyen, P., Vierstraete, E., Williamson, M. R., Ament, S. A., Brown, S. J., Corona, M., Dearden, P. K., Dunn, W. A., Elekonich, M. M., Fujiyuki, T., Gattermeier, I., Gempe, T., Hasselmann, M., Kage, E., Kamikouchi, A., Kubo, T., Kunieda, T., Lorenzen, M., Milshina, N. V., Morioka, M., Ohashi, K., Overbeek, R., Ross, C. A., Schioett, M., Shippy, T., Takeuchi, H., Toth, A. L., Willis, J. H., Wilson, M. J., Gordon, K. H. J., Letunic, I., Hackett, K., Peterson, J., Felsenfeld, A., Guyer, M., Solignac, M., Agarwala, R., Cornuet, J. M., Monnerot, M., Mougel, F., Reese, J. T., Vautrin, D., Gillespie, J. J., Cannone, J. J., Gutell, R. R., Johnston, J. S., Eisen, M. B., Iyer, V. N., Iyer, V., Kosarev, P., Mackey, A. J., Solovyev, V., Souvorov, A., Aronstein, K. A., Bilikova, K., Chen, Y. P., Clark, A. G., Decanini, L. I., Gelbart, W. M., Hetru, C., Hultmark, D., Imler, J. L., Jiang, H., Kanost, M., Kimura, K., Lazzaro, B. P., Lopez, D. L., Simuth, J., Thompson, G. J., Zou, Z., De Jong, P., Sodergren, E., Csurös, M., Milosavljevic, A., Osoegawa, K., Richards, S., Shu, C. L., Duret, L., Elhaik, E., Graur, D., Anzola, J. M., Campbell, K. S., Childs, K. L., Collinge, D., Crosby, M. A., Dickens, C. M., Grametes, L. S., Grozinger, C. M., Jones, P. L., Jorda, M., Ling, X., Matthews, B. B., Miller, J., Mizzen, C., Peinado, M. A., Reid, J. G., Russo, S. M., Schroeder, A. J., St. Pierre, S. E., Wang, Y., Zhou, P., Jiang, H., Kitts, P., Ruef, B., Venkatraman, A., Zhang, L., Aquino-Perez, G., Whitfield, C. W., Behura, S. K., Berlocher, S. H., Sheppard, W. S., Smith, D. R., Suarez, A. V., Tsutsui, N. D., Wei, X., Wheeler, D., Havlak, P., Li, B., Liu, Y., Jovilet, A., Lee, S., Nazareth, L. V., Pu, L. L., Thorn, R., Stolc, V., Newman, T., Samanta, M., Tongprasit, W. A., Claudianos, C., Berenbaum, M. R., Biswas, S., De Graaf, D. C., Feyereisen, R., Johnson, R. M., Oakeshott, J. G., Ranson, H., Schuler, M. A., Muzny, D., Chacko, J., Davis, C., Dinh, H., Gill, R., Hernandez, J., Hines, S., Hume, J., Jackson, L. R., Kovar, C., Lewis, L., Miner, G., Morgan, M., Nguyen, N., Okwuonu, G., Paul, H., Santibanez, J., Savery, G., Svatek, A., Villasana, D. & Wright, R., Oct 26 2006, In : Nature. 443, 7114, p. 931-949 19 p.

Research output: Contribution to journalArticle

Insect Genome
Bees
Genes
Odorant Receptors
Genome

Insights into interphase large-scale chromatin structure from analysis of engineered chromosome regions

Belmont, A. S., Hu, Y., Sinclair, P. B., Wu, W., Bian, Q. & Kireev, I., Dec 1 2010, In : Cold Spring Harbor symposia on quantitative biology. 75, p. 453-460 8 p.

Research output: Contribution to journalArticle

Interphase
Chromosomes
Chromatin
Fibers
B-Form DNA

Ins and outs of spiralian gastrulation

Lyons, D. C. & Henry, J. Q., Jan 1 2014, In : International Journal of Developmental Biology. 58, 6-8, p. 413-428 16 p.

Research output: Contribution to journalArticle

Gastrulation
Cell Lineage
Morphogenesis
Embryonic Structures
Platyhelminths

Inhibitory cell-cell interactions control development in the embryos of Cerebratulus lacteus.

Henry, J. J. & Martindale, M. Q., Oct 1994, In : The Biological bulletin. 187, 2, p. 238-239 2 p.

Research output: Contribution to journalArticle

Polychaeta
Blastomeres
development control
cell communication
blastomeres
Papilio polyxenes
methoxsalen
Methoxsalen
psoralens
Detoxification

Inductive processes leading to inner ear formation during Xenopus development

Gallagher, B. C., Henry, J. J. & Grainger, R. M., Apr 10 1996, In : Developmental Biology. 175, 1, p. 95-107 13 p.

Research output: Contribution to journalArticle

Inner Ear
Xenopus
Ear
Neural Plate
Ectoderm

Inductive interactions in the spatial and temporal restriction of lens-forming potential in embryonic ectoderm of Xenopus laevis

Henry, J. J. & Grainger, R. M., Nov 1987, In : Developmental Biology. 124, 1, p. 200-214 15 p.

Research output: Contribution to journalArticle

Ectoderm
Xenopus laevis
Lenses
Gastrulation
Neurulation

Inductive interactions and embryonic equivalence groups in a basal metazoan, the ctenophore Mnemiopsis leidyi

Henry, J. Q. & Martindale, M. Q., Jan 1 2004, In : Evolution and Development. 6, 1, p. 17-24 8 p.

Research output: Contribution to journalArticle

Ctenophora
Mnemiopsis leidyi
metazoan
locomotion
cleavage

Induction of cytochrome P450-mediated detoxification of xanthotoxin in the black swallowtail

Cohen, M. B., Berenbaum, M. R. & Schuler, M. A., Sep 1 1989, In : Journal of Chemical Ecology. 15, 9, p. 2347-2355 9 p.

Research output: Contribution to journalArticle

Papilio polyxenes
methoxsalen
Methoxsalen
Detoxification
detoxification

Induction of a secondary body axis in Xenopus by antibodies to β-catenin

McCrea, P. D., Brieher, W. M. & Gumbiner, B. M., Oct 1993, In : Journal of Cell Biology. 123, 2, p. 477-484 8 p.

Research output: Contribution to journalArticle

Catenins
Xenopus
Cadherins
Antibodies
Embryonic Structures

Individual hydrogen bonds play a critical role in MHC class II:peptide interactions: Implications for the dynamic aspects of class II trafficking and DM-mediated peptide exchange

Sant, A. J., Beeson, C., McFarland, B., Cao, J., Ceman, S., Bryant, P. W. & Wu, S., Jan 1 1999, In : Immunological Reviews. 172, p. 239-253 15 p.

Research output: Contribution to journalArticle

Hydrogen
Peptides
Hydrogen Bonding
Amino Acids

Improved hidden Markov models for molecular motors, part 2: Extensions and application to experimental data

Syed, S., Müllner, F. E., Selvin, P. R. & Sigworth, F. J., Dec 1 2010, In : Biophysical journal. 99, 11, p. 3696-3703 8 p.

Research output: Contribution to journalArticle

Molecular Models
Myosin Type V
Melanosomes
Noise
Population

Improved hidden Markov models for molecular motors, part 1: Basic theory

Müllner, F. E., Syed, S., Selvin, P. R. & Sigworth, F. J., Dec 1 2010, In : Biophysical journal. 99, 11, p. 3684-3695 12 p.

Research output: Contribution to journalArticle

Molecular Models
Chemical Models
Ion Channels

Imprinting and evolution of two Kruppel-type zinc-finger genes, ZIM3 and ZNF264, located in the PEG3/USP29 imprinted domain

Kim, J., Bergmann, A., Wehri, E., Lu, X. & Stubbs, L., Aug 1 2001, In : Genomics. 77, 1-2, p. 91-98 8 p.

Research output: Contribution to journalArticle

Zinc Fingers
Genes
Testis
Proteins
Open Reading Frames
Papilio polyxenes
Methoxsalen
Mixed Function Oxygenases
cytochrome P-450
Cytochrome P-450 Enzyme System

Immune system-mediated atherosclerosis caused by deficiency of long non-coding RNA MALAT1 in ApoE-/- mice

Gast, M., Rauch, B. H., Nakagawa, S., Haghikia, A., Jasina, A., Haas, J., Nath, N., Jensen, L., Stroux, A., Böhm, A., Friebel, J., Rauch, U., Skurk, C., Blankenberg, S., Zeller, T., Kannanganattu, P. K., Meder, B., Kuss, A., Landmesser, U. & Poller, W., Feb 1 2019, In : Cardiovascular research. 115, 2, p. 302-314 13 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
Apolipoproteins E
Immune System
Atherosclerosis
Neoplasm Metastasis

Immortalized suprachiasmatic nucleus cells express components of multiple circadian regulatory pathways

Hurst, W. J., Gillette, M. U., Earnest, D., Gillette, M. U. & Gillette, M. U., Jan 1 2002, In : Biochemical and Biophysical Research Communications. 292, 1, p. 20-30 11 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Cellular Structures
Clocks
Genes
Cells

Illumination-Dependent Changes in the Intrinsic Fluorescence of Bacteriorhodopsin

Bogomolni, R. A., Stubbs, L. & Lanyi, J. K., Jan 1 1978, In : Biochemistry. 17, 6, p. 1037-1041 5 p.

Research output: Contribution to journalArticle

Bacteriorhodopsins
Lighting
Fluorescence
Tryptophan
Wavelength
Cytochrome P-450 Enzyme System
Insects
Heme
NADP
Oxidoreductases

IGF-II transcription in skeletal myogenesis is controlled by mTOR and nutrients

Erbay, E., Park, I. H., Nuzzi, P. D., Schoenherr, C. J. & Chen, J., Dec 8 2003, In : Journal of Cell Biology. 163, 5, p. 931-936 6 p.

Research output: Contribution to journalArticle

Insulin-Like Growth Factor II
Muscle Development
Somatomedins
Food
Myoblasts

IGF-II is regulated by microRNA-125b in skeletal myogenesis

Ge, Y., Sun, Y. & Chen, J., Jan 10 2011, In : Journal of Cell Biology. 192, 1, p. 69-81 13 p.

Research output: Contribution to journalArticle

Insulin-Like Growth Factor II
Muscle Development
MicroRNAs
Sirolimus
Muscles

Identification of variable amino acids in the SRS1 region of CYP6B1 modulating furanocoumarin metabolism

Pan, L., Wen, Z., Baudry, J., Berenbaum, M. R. & Schuler, M. A., Feb 1 2004, In : Archives of Biochemistry and Biophysics. 422, 1, p. 31-41 11 p.

Research output: Contribution to journalArticle

Heme
Metabolism
Amino Acids
Insects
Hydrogen

Identification of SAS4 and SAS5, two genes that regulate silencing in Saccharomyces cerevisiae

Xu, E. Y., Kim, S., Replogle, K., Rine, J. & Rivier, D. H., Sep 1 1999, In : Genetics. 153, 1, p. 13-23 11 p.

Research output: Contribution to journalArticle

Gene Silencing
Saccharomyces cerevisiae
Genes
Binding Sites
Acute Myeloid Leukemia

Identification of mouse YB1/p50 as a component of the FMRP-associated mRNP particle

Ceman, S., Nelson, R. & Warren, S. T., Dec 29 2000, In : Biochemical and Biophysical Research Communications. 279, 3, p. 904-908 5 p.

Research output: Contribution to journalArticle

Y-Box-Binding Protein 1
RNA-Binding Proteins
Proteins
Intellectual Disability
Mass spectrometry