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Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler

Chen, Y., Zhang, Y., Wang, Y., Zhang, L., Brinkman, E. K., Adam, S. A., Goldman, R., Van Steensel, B., Ma, J. & Belmont, A. S., Nov 1 2018, In : Journal of Cell Biology. 217, 11, p. 4025-4048 24 p.

Research output: Contribution to journalArticle

MAPK activation and the specification of the D quadrant in the gastropod mollusc, Crepidula fornicata

Henry, J. J. & Perry, K. J., Jan 1 2008, In : Developmental Biology. 313, 1, p. 181-195 15 p.

Research output: Contribution to journalArticle

Mammalian target of rapamycin regulates miRNA-1 and follistatin in skeletal myogenesis

Sun, Y., Ge, Y., Drnevich, J., Zhao, Y., Band, M. & Chen, J., Jun 28 2010, In : Journal of Cell Biology. 189, 7, p. 1157-1169 13 p.

Research output: Contribution to journalArticle

Mammalian target of rapamycin and Rictor control neutrophil chemotaxis by regulating Rac/Cdc42 activity and the actin cytoskeleton

He, Y., Li, D., Cook, S. L., Yoon, M. S., Kapoor, A., Rao, C. V., Kenis, P. J. A., Chen, J. & Wang, F., Nov 1 2013, In : Molecular biology of the cell. 24, 21, p. 3369-3380 12 p.

Research output: Contribution to journalArticle

Mammalian target of rapamycin (mTOR) signaling is required for a late-stage fusion process during skeletal myotube maturation

Park, I. H. & Chen, J., Sep 9 2005, In : Journal of Biological Chemistry. 280, 36, p. 32009-32017 9 p.

Research output: Contribution to journalArticle

Male sterility associated with overexpression of the noncoding hsr ω gene in cyst cells of testis of Drosophila melanogaster

Rajendra, T. K., Prasanth, K. V. & Lakhotia, S. C., Aug 2001, In : Journal of genetics. 80, 2, p. 97-110 14 p.

Research output: Contribution to journalArticle

Malat1 regulates myogenic differentiation and muscle regeneration through modulating MyoD transcriptional activity

Chen, X., He, L., Zhao, Y., Li, Y., Zhang, S., Sun, K., So, K., Chen, F., Zhou, L., Lu, L., Wang, L., Zhu, X., Bao, X., Esteban, M. A., Nakagawa, S., Prasanth, K. V., Wu, Z., Sun, H. & Wang, H., Mar 14 2017, In : Cell Discovery. 3, 17002.

Research output: Contribution to journalArticle

Malat1 is not an essential component of nuclear speckles in mice

Nakagawa, S., Ip, J. Y., Shioi, G., Tripathi, V., Zong, X., Hirose, T. & Prasanth, K. V., Aug 1 2012, In : RNA. 18, 8, p. 1487-1499 13 p.

Research output: Contribution to journalArticle

Magnetic Cytoskeleton Affinity Purification of Microtubule Motors Conjugated to Quantum Dots

Tjioe, M., Ryoo, H., Ishitsuka, Y., Ge, P., Bookwalter, C., Huynh, W., McKenney, R. J., Trybus, K. M. & Selvin, P. R., Jul 18 2018, In : Bioconjugate Chemistry. 29, 7, p. 2278-2286 9 p.

Research output: Contribution to journalArticle

Lysine deacetylases regulate the heat shock response including the age-associated impairment of HSF1

Zelin, E. & Freeman, B. C., Apr 10 2015, In : Journal of Molecular Biology. 427, 7, p. 1644-1654 11 p.

Research output: Contribution to journalArticle

Luminescence resonance energy transfer measurements in myosin

Getz, E. B., Cooke, R. & Selvin, P. R., May 1998, In : Biophysical journal. 74, 5, p. 2451-2458 8 p.

Research output: Contribution to journalArticle

Long-Range Directional Movement of an Interphase Chromosome Site

Chuang, C. H., Carpenter, A. E., Fuchsova, B., Johnson, T., de Lanerolle, P. & Belmont, A. S., Apr 18 2006, In : Current Biology. 16, 8, p. 825-831 7 p.

Research output: Contribution to journalArticle

Long Noncoding RNA PURPL Suppresses Basal p53 Levels and Promotes Tumorigenicity in Colorectal Cancer

Li, X. L., Subramanian, M., Jones, M. F., Chaudhary, R., Singh, D. K., Zong, X., Gryder, B., Sindri, S., Mo, M., Schetter, A., Wen, X., Parvathaneni, S., Kazandjian, D., Jenkins, L. M., Tang, W., Elloumi, F., Martindale, J. L., Huarte, M., Zhu, Y., Robles, A. I. & 9 others, Frier, S. M., Rigo, F., Cam, M., Ambs, S., Sharma, S., Harris, C. C., Dasso, M., Prasanth, K. V. & Lal, A., Sep 5 2017, In : Cell Reports. 20, 10, p. 2408-2423 16 p.

Research output: Contribution to journalArticle

Long noncoding RNA MALAT1 promotes hepatocellular carcinoma development by SRSF1 upregulation and mTOR activation

Malakar, P., Shilo, A., Mogilevsky, A., Stein, I., Pikarsky, E., Nevo, Y., Benyamini, H., Elgavish, S., Zong, X., Prasanth, K. V. & Karni, R., Mar 1 2017, In : Cancer Research. 77, 5, p. 1155-1167 13 p.

Research output: Contribution to journalArticle

Long non-coding RNA malat-1 is dispensable during pressure overload-induced cardiac remodeling and failure in mice

Peters, T., Hermans-Beijnsberger, S., Beqqali, A., Bitsch, N., Nakagawa, S., Prasanth, K. V., De Windt, L. J., Van Oort, R. J., Heymans, S. & Schroen, B., Feb 2016, In : PloS one. 11, 2, e0150236.

Research output: Contribution to journalArticle

Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB

Tripathi, V., Shen, Z., Chakraborty, A., Giri, S., Freier, S. M., Wu, X., Zhang, Y., Gorospe, M., Prasanth, S. G., Lal, A. & Prasanth, K. V., Apr 15 2013, In : PLoS genetics. 9, 3, e1003368.

Research output: Contribution to journalArticle

Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid Glycoside

Petronikolou, N., Hollatz, A. J., Schuler, M. A. & Nair, S. K., Apr 16 2018, In : ChemBioChem. 19, 8, p. 784-788 5 p.

Research output: Contribution to journalArticle

Locations of human and mouse genes encoding the RFX1 and RFX2 transcription factor proteins

Doyle, J., Hoffman, S., Ucla, C., Reith, W., Mach, B. & Stubbs, L., Jul 1 1996, In : Genomics. 35, 1, p. 227-230 4 p.

Research output: Contribution to journalArticle

Location of the gene involving the Small eye mutation on mouse chromosome 2 suggests homology with human aniridia 2 (AN2)

van der Meer-de Jong, R., Dickinson, M. E., Woychik, R. P., Stubbs, L., Hetherington, C. & Hogan, B. L. M., Jun 1990, In : Genomics. 7, 2, p. 270-275 6 p.

Research output: Contribution to journalArticle

Location of the DBP transcription factor gene in human and mouse

Stubbs, L., Carver, E., Ashworth, L. & Lopez-Molina, L., Jan 1 1996, In : Mammalian Genome. 7, 1, p. 65-67 3 p.

Research output: Contribution to journalArticle

Location of mouse and human genes corresponding to conserved canine olfactory receptor gene subfamilies

Carver, E. A., Issel-Tarver, L., Rine, J., Olsen, A. S. & Stubbs, L., Jun 17 1998, In : Mammalian Genome. 9, 5, p. 349-354 6 p.

Research output: Contribution to journalArticle

Localization and characterization of nitric oxide synthase in the rat suprachiasmatic nucleus: Evidence for a nitrergic plexus in the biological clock

Chen, D., Hurst, W. J., Ding, J. M., Faiman, L. E., Mayer, B. & Gillette, M. U., Feb 1997, In : Journal of Neurochemistry. 68, 2, p. 855-861 7 p.

Research output: Contribution to journalArticle

LncRNA-mediated regulation of SOX9 expression in basal subtype breast cancer cells

Tariq, A., Hao, Q., Sun, Q., Singh, D. K., Jadaliha, M., Zhang, Y., Chetlangia, N., Ma, J., Holton, S. E., Bhargava, R., Lal, A., Prasanth, S. G. & Prasanth, K. V., Jan 1 2020, In : RNA. 26, 2, p. 175-185 11 p.

Research output: Contribution to journalArticle

Live images of RNA polymerase II transcription units

Patel, S., Novikova, N., Beenders, B., Austin, C. & Bellini, M., Apr 1 2008, In : Chromosome Research. 16, 2, p. 223-232 10 p.

Research output: Contribution to journalArticle

Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation

Masui, O., Bonnet, I., Le Baccon, P., Brito, I., Pollex, T., Murphy, N., Hupé, P., Barillot, E., Belmont, A. S. & Heard, E., Apr 29 2011, In : Cell. 145, 3, p. 447-458 12 p.

Research output: Contribution to journalArticle

Lipid products of PI(3)Ks maintain persistent cell polarity and directed motility in neutrophils

Wang, F., Herzmark, P., Weiner, O. D., Srinivasan, S., Servant, G. & Bourne, H. R., Jan 1 2002, In : Nature Cell Biology. 4, 7, p. 513-518 6 p.

Research output: Contribution to journalArticle

Lineage-specific transcription factors and the evolution of gene regulatory networks

Nowick, K. & Stubbs, L., Jan 16 2010, In : Briefings in Functional Genomics and Proteomics. 9, 1, p. 65-78 14 p., elp056.

Research output: Contribution to journalArticle

Lineage-specific imprinting and evolution of the zinc-finger gene ZIM2

Kim, J., Bergmann, A., Lucas, S., Stone, R. & Stubbs, L., Jul 1 2004, In : Genomics. 84, 1, p. 47-58 12 p.

Research output: Contribution to journalArticle

Lineage-specific expansion of KRAB zinc-finger transcription factor genes: Implications for the evolution of vertebrate regulatory networks

Hamilton, A. T., Huntley, S., Kim, J., Branscomb, E. & Stubbs, L., Jan 1 2003, In : Cold Spring Harbor symposia on quantitative biology. 68, p. 131-140 10 p.

Research output: Contribution to journalArticle

Lineage-specific biology revealed by a finished genome assembly of the mouse

Church, D. M., Goodstadt, L., Hillier, L. W., Zody, M. C., Goldstein, S., She, X., Bult, C. J., Agarwala, R., Cherry, J. L., DiCuccio, M., Hlavina, W., Kapustin, Y., Meric, P., Maglott, D., Birtle, Z., Marques, A. C., Graves, T., Zhou, S., Teague, B., Potamousis, K. & 155 others, Churas, C., Place, M., Herschleb, J., Runnheim, R., Forrest, D., Amos-Landgraf, J., Schwartz, D. C., Cheng, Z., Lindblad-Toh, K., Eichler, E. E., Ponting, C. P., Muzny, D. M., Dugan-Rocha, S., Ding, Y., Scherer, S. E., Buhay, C. J., Cree, A., Hernandez, J., Holder, M., Hume, J., Jackson, L. R., Kovar, C., Lee, S. L., Lewis, L. R., Metzker, M. L., Narareth, L. V., Sabo, A., Sodergren, E., Gibbs, R. A., FitzGerald, M., Cook, A., Jaffe, D. B., Garber, M., Zimmer, A. R., Pirun, M., Russell, L., Sharpe, T., Chaturvedi, M. K. K., Wilkinson, J., LaButti, K., Yang, X., Bessette, D., Allen, N. R., Nguyen, C., Nguyen, T., Dunbar, C., Lubonja, R., Matthews, C., Liu, X., Benamara, M., Negash, T., Lokyitsang, T., Decktor, K., Piqani, B., Munson, G., Tenzin, P., Stone, S., Macdonald, P., Arachchi, H., Abouelleil, A., Lui, A., Priest, M., Gearin, G., Brown, A., Aftuck, L., Shea, T., Sykes, S., Berlin, A., Chu, J., Dooley, K., Hagopian, D., Hall, J., Hafez, N., Smith, C. L., Olandt, P., Miller, K., Ventkataraman, V., Rachupka, A., Dorris, L., Ayotte, L., Mabbitt, R., Erickson, J., Horn, A., An, P., Naylor, J. W., Settipalli, S., Lander, E. S., Wilson, R. K., Graves, T. A., Fulton, R. S., Rock, S. M., Chinwalla, A. T., Bernard, K., Courtney, L. P., Fronick, C., Fulton, L. L., O'Laughlin, M., Kremitzki, C. L., Minx, P. J., Nelson, J. O., Schatzkamer, K. L., Strong, C., Wollam, A. M., Weinstock, G. M., Yang, S. P., Rogers, J., Grafham, D., Humphray, S., Nicholson, C., Bird, C., Brown, A. J., Burton, J., Clee, C., Hunt, A., Jones, M. C., Lloyd, C., Matthews, L., Mclaren, K., Mclaren, S., McLay, K., Palmer, S. A., Plumb, R., Shownkeen, R., Sims, S., Quail, M. A., Whitehead, S. L., Willey, D. L., Deschamps, S., Kenton, S., Song, L., Do, T., Roe, B., Bouffard, G. G., Blakesley, R. W., Green, E. D., Kucherlapati, R., Grills, G., Li, L., Montgomery, K. T., Kramer, M., Speigel, L., McCombie, W. R., Lucas, S., Terry, A., Gordon, L., Stubbs, L., Denny, P., Brown, S. D. M., Mallon, A. M., Campbell, R. D., Botherby, M. R. M., Jackson, I. J., Rubenfield, M. J., Rogosin, A. M. & Smith, D. R., May 2009, In : PLoS biology. 7, 5, e1000112.

Research output: Contribution to journalArticle

Ligand specific effects on aluminum incorporation and toxicity in neurons and astrocytes

Lévesque, L., Mizzen, C. A., McLachlan, D. R. & Fraser, P. E., Sep 22 2000, In : Brain Research. 877, 2, p. 191-202 12 p.

Research output: Contribution to journalArticle

Ligand-mediated assembly and real-time cellular dynamics of estrogen receptor α-coactivator complexes in living cells

Stenoien, D. L., Nye, A. C., Mancini, M. G., Patel, K., Dutertre, M., O'Malley, B. W., Smith, C. L., Belmont, A. S. & Mancini, M. A., Jul 4 2001, In : Molecular and cellular biology. 21, 13, p. 4404-4412 9 p.

Research output: Contribution to journalArticle

Lifetime- and color-tailored fluorophores in the micro- to millisecond time regime

Chen, J. & Selvin, P. R., Feb 2 2000, In : Journal of the American Chemical Society. 122, 4, p. 657-660 4 p.

Research output: Contribution to journalArticle

Leucyl-tRNA Synthetase Activates Vps34 in Amino Acid-Sensing mTORC1 Signaling

Yoon, M. S., Son, K., Arauz, E., Han, J. M., Kim, S. & Chen, J., Aug 9 2016, In : Cell Reports. 16, 6, p. 1510-1517 8 p.

Research output: Contribution to journalArticle

Lens regeneration from the cornea requires suppression of Wnt/β-catenin signaling

Hamilton, P. W., Sun, Y. & Henry, J. J., Apr 1 2016, In : Experimental Eye Research. 145, p. 206-215 10 p.

Research output: Contribution to journalArticle

Lateral dimerization is required for the homophilic binding activity of C-cadherin

Brieher, W. M., Yap, A. S. & Gumbiner, B. M., Oct 1996, In : Journal of Cell Biology. 135, 2, p. 487-496 10 p.

Research output: Contribution to journalArticle

Lateral clustering of the adhesive ectodomain: A fundamental determinant of cadherin function

Yap, A. S., Brieher, W. M., Pruschy, M. & Gumbiner, B. M., May 1 1997, In : Current Biology. 7, 5, p. 308-315 8 p.

Research output: Contribution to journalArticle

Late events in the intracellular sorting of major histocompatibility complex class II molecules are regulated by the 80-82 segment of the class II β chain

Tan, L. J., Ceman, S., Chervonsky, A., Rodriguez-Paris, J., Steck, T. L. & Sant, A. J., Jun 1 1997, In : European Journal of Immunology. 27, 6, p. 1479-1488 10 p.

Research output: Contribution to journalArticle

Larval environmental stress alters Aedes aegypti competence for Sindbis virus

Muturi, E. J., Kim, C. H., Alto, B. W., Berenbaum, M. R. & Schuler, M. A., Aug 1 2011, In : Tropical Medicine and International Health. 16, 8, p. 955-964 10 p.

Research output: Contribution to journalArticle

Large-scale chromatin unfolding and remodeling induced by VP16 acidic activation domain

Tumbar, T., Sudlow, G. & Belmont, A. S., Jun 28 1999, In : Journal of Cell Biology. 145, 7, p. 1341-1354 14 p.

Research output: Contribution to journalArticle

Large-scale chromatin structure of inducible genes: Transcription on a condensed, linear template

Hu, Y., Kireev, I., Plutz, M., Ashourian, N. & Belmont, A. S., Apr 6 2009, In : Journal of Cell Biology. 185, 1, p. 87-100 14 p.

Research output: Contribution to journalArticle

Lanthionine synthetase C-like protein 2 (LanCL2) is important for adipogenic differentiation

Dutta, D., Lai, K. Y., Reyes-Ordoñez, A., Chen, J. & van der Donk, W. A., Jan 1 2018, In : Journal of Lipid Research. 59, 8, p. 1433-1445 13 p.

Research output: Contribution to journalArticle

Lanthionine synthetase C-like protein 2 (LanCL2) is a novel regulator of Akt

Zeng, M., Van Der Donk, W. A. & Chen, J., Dec 1 2014, In : Molecular biology of the cell. 25, 24, p. 3954-3961 8 p.

Research output: Contribution to journalArticle

Lanthanide-based resonance energy transfer

Selvin, P. R., Dec 1 1996, In : IEEE Journal on Selected Topics in Quantum Electronics. 2, 4, p. 1077-1087 11 p.

Research output: Contribution to journalArticle

LanCL proteins are not Involved in Lanthionine Synthesis in Mammals

He, C., Zeng, M., Dutta, D., Koh, T. H., Chen, J. & Van Der Donk, W. A., Jan 20 2017, In : Scientific reports. 7, 40980.

Research output: Contribution to journalArticle

Lamin B distribution and association with peripheral chromatin revealed by optical sectioning and electron microscopy tomography

Belmont, A. S., Zhai, Y. & Thilenius, A., Dec 1 1993, In : Journal of Cell Biology. 123, 6 II, p. 1671-1685 15 p.

Research output: Contribution to journalArticle

Open Access

Lack of muscle mTOR kinase activity causes early onset myopathy and compromises whole-body homeostasis

Zhang, Q., Duplany, A., Moncollin, V., Mouradian, S., Goillot, E., Mazelin, L., Gauthier, K., Streichenberger, N., Angleraux, C., Chen, J., Ding, S., Schaeffer, L. & Gangloff, Y. G., Feb 2019, In : Journal of Cachexia, Sarcopenia and Muscle. 10, 1, p. 35-53 19 p.

Research output: Contribution to journalArticle

Labeling proteins inside living cells using external fluorophores for microscopy

Teng, K. W., Ishitsuka, Y., Ren, P., Youn, Y., Deng, X., Ge, P., Belmont, A. S. & Selvin, P. R., Dec 9 2016, In : eLife. 5, DECEMBER2016, e20378.

Research output: Contribution to journalArticle

Label-free intracellular transport measured by spatial light interference microscopy

Wang, Z., Millet, L., Chan, V., Ding, H., Gillette, M. U., Bashir, R. & Popescu, G., Feb 1 2011, In : Journal of biomedical optics. 16, 2, 026019.

Research output: Contribution to journalArticle