Research Output 1969 2020

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Multiple inductive signals are involved in the development of the ctenophore Mnemiopsis leidyi

Henry, J. Q. & Martindale, M. Q., Oct 1 2001, In : Developmental Biology. 238, 1, p. 40-46 7 p.

Research output: Contribution to journalArticle

Ctenophora
Comb and Wattles
Cilia
Cell Lineage
Embryonic Development

Multimodal Chemical Analysis of the Brain by High Mass Resolution Mass Spectrometry and Infrared Spectroscopic Imaging

Neumann, E. K., Comi, T. J., Spegazzini, N., Mitchell, J. W., Rubakhin, S. S., Gillette, M. U., Bhargava, R. & Sweedler, J. V., Oct 2 2018, In : Analytical chemistry. 90, 19, p. 11572-11580 9 p.

Research output: Contribution to journalArticle

Mass spectrometry
Brain
Infrared radiation
Imaging techniques
Chemical analysis

Multidentate Polymer Coatings for Compact and Homogeneous Quantum Dots with Efficient Bioconjugation

Ma, L., Tu, C., Le, P., Chitoor, S., Lim, S. J., Zahid, M. U., Teng, K. W., Ge, P., Selvin, P. R. & Smith, A. M., Mar 16 2016, In : Journal of the American Chemical Society. 138, 10, p. 3382-3394 13 p.

Research output: Contribution to journalArticle

Quantum Dots
Nanoparticles
Semiconductor quantum dots
ligand
coating

Multicolor super-resolution DNA imaging for genetic analysis

Baday, M., Cravens, A., Hastie, A., Kim, H., Kudeki, D. E., Kwok, P. Y., Xiao, M. & Selvin, P. R., Jul 11 2012, In : Nano Letters. 12, 7, p. 3861-3866 6 p.

Research output: Contribution to journalArticle

DNA
deoxyribonucleic acid
Endonucleases
Imaging techniques
enzymes

Mulan: Multiple-sequence local alignment and visualization for studying function and evolution

Ovcharenko, I., Loots, G. G., Giardine, B. M., Hou, M., Ma, J., Hardison, R. C., Stubbs, L. & Miller, W., Jan 1 2005, In : Genome Research. 15, 1, p. 184-194 11 p.

Research output: Contribution to journalArticle

Sequence Alignment
Genome
Transcription Factors
Binding Sites
Genes

mTOR supports long-term self-renewal and suppresses mesoderm and endoderm activities of human embryonic stem cells

Zhou, J., Su, P., Wang, L., Chen, J., Zimmermann, M., Genbacev, O., Afonja, O., Horne, M. C., Tanaka, T., Duan, E., Fisher, S. J., Liao, J., Chen, J. & Wang, F., May 12 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 19, p. 7840-7845 6 p.

Research output: Contribution to journalArticle

Endoderm
Mesoderm
Sirolimus
Developmental Genes
Protein-Serine-Threonine Kinases

mTOR regulates skeletal muscle regeneration in vivo through kinase-dependent and kinase-independent mechanisms

Ge, Y., Wu, A. L., Warnes, C., Liu, J., Zhang, C., Kawasome, H., Terada, N., Boppart, M. D., Schoenherr, C. J. & Chen, J., Dec 1 2009, In : American Journal of Physiology - Cell Physiology. 297, 6

Research output: Contribution to journalArticle

Sirolimus
Regeneration
Skeletal Muscle
Phosphotransferases
Muscles

MSX2 mediates entry of human pluripotent stem cells into mesendoderm by simultaneously suppressing SOX2 and activating NODAL signaling

Wu, Q., Zhang, L., Su, P., Lei, X., Liu, X., Wang, H., Lu, L., Bai, Y., Xiong, T., Li, D., Zhu, Z., Duan, E., Jiang, E., Feng, S., Han, M., Xu, Y., Wang, F. & Zhou, J., Dec 1 2015, In : Cell Research. 25, 12, p. 1314-1332 19 p.

Research output: Contribution to journalArticle

Pluripotent Stem Cells
Homeobox Genes
Muscles
Homeodomain Proteins
Germ Layers

Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

Skariah, G., Seimetz, J., Norsworthy, M., Lannom, M. C., Kenny, P. J., Elrakhawy, M., Forsthoefel, C., Drnevich, J., Kalsotra, A. & Ceman, S., Jun 29 2017, In : BMC biology. 15, 1, 54.

Research output: Contribution to journalArticle

Moloney murine leukemia virus
Retroelements
retrotransposons
leukemia
Viruses

MOV10 and FMRP Regulate AGO2 Association with MicroRNA Recognition Elements

Kenny, P. J., Zhou, H., Kim, M., Skariah, G., Khetani, R. S., Drnevich, J., Arcila, M. L., Kosik, K. S. & Ceman, S., Dec 11 2014, In : Cell Reports. 9, 5, p. 1729-1741 13 p.

Research output: Contribution to journalArticle

MicroRNAs
RNA
Fragile X Mental Retardation Protein
RNA Helicases
Messenger RNA

Motor domain phosphorylation modulates kinesin-1 transport

DeBerg, H. A., Blehm, B. H., Sheung, J., Thompson, A. R., Bookwalter, C. S., Torabi, S. F., Schroer, T. A., Berger, C. L., Lu, Y., Trybus, K. M. & Selvin, P. R., Nov 8 2013, In : Journal of Biological Chemistry. 288, 45, p. 32612-32621 10 p.

Research output: Contribution to journalArticle

Kinesin
Phosphorylation
Microtubules
Protein Isoforms
Neurodegenerative diseases

Morphogenesis along the animal-vegetal axis: Fates of primary quartet micromere daughters in the gastropod Crepidula fornicata

Lyons, D. C., Perry, K. J. & Henry, J. Q., Sep 15 2017, In : BMC Evolutionary Biology. 17, 1, 217.

Research output: Contribution to journalArticle

morphogenesis
gastropod
Gastropoda
embryo
animal

Molecular profiling: Gene expression reveals discrete phases of lens induction and development in Xenopus laevis

Walter, B. E., Tian, Y., Garlisch, A. K., Carinato, M. E., Elkins, M. B., Wolfe, A. D., Schaefer, J. J., Perry, K. J. & Henry, J. J., Mar 24 2004, In : Molecular Vision. 10, p. 186-198 13 p.

Research output: Contribution to journalArticle

Xenopus laevis
Gene Expression Profiling
Lenses
Genes
Ectoderm

Molecular motors one at a time: FIONA to the rescue

Kural, C., Balci, H. & Selvin, P. R., Nov 30 2005, In : Journal of Physics Condensed Matter. 17, 47, p. S3979-S3995

Research output: Contribution to journalArticle

myosins
Myosin Type V
Fluorescence
ribonucleic acids
Dyneins

Molecular markers for corneal epithelial cells in larval vs. adult Xenopus frogs

Sonam, S., Srnak, J. A., Perry, K. J. & Henry, J. J., Jul 2019, In : Experimental Eye Research. 184, p. 107-125 19 p.

Research output: Contribution to journalArticle

Xenopus
Anura
Cornea
Stem Cells
Epithelial Cells

Molecular docking of substrates and inhibitors in the catalytic site of CYP6B1, an insect cytochrome P450 monooxygenase

Baudry, J., Li, W., Pan, L., Berenbaum, M. R. & Schuler, M. A., Aug 1 2003, In : Protein Engineering. 16, 8, p. 577-587 11 p.

Research output: Contribution to journalArticle

Mixed Function Oxygenases
Cytochrome P-450 Enzyme System
Insects
Catalytic Domain
Substrates

Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana

Rupasinghe, S. G., Duan, H. & Schuler, M. A., Jul 1 2007, In : Proteins: Structure, Function and Genetics. 68, 1, p. 279-293 15 p.

Research output: Contribution to journalArticle

Mixed Function Oxygenases
Arabidopsis
Fatty Acids
lauric acid
Oleic Acid

Molecular comparison of monocot and dicot U1 and U2 snRNAs

Musci, M. A., Egeland, D. B. & Schuler, M. A., Jul 1992, In : The Plant Journal. 2, 4, p. 589-599 11 p.

Research output: Contribution to journalArticle

small nuclear RNA
Small Nuclear Ribonucleoproteins
Magnoliopsida
Liliopsida
Triticum
methoxsalen
Methoxsalen
Helicoverpa zea
Cloning
Molecular Cloning

Molecular characterization of CYP73A9 and CYP82A1 P450 genes involved in plant defense in pea

Whitbred, J. M. & Schuler, M. A., Jan 1 2000, In : Plant physiology. 124, 1, p. 47-58 12 p.

Research output: Contribution to journalArticle

Peas
peas
Mixed Function Oxygenases
promoter regions
phenylpropanoids

Molecular chaperone-mediated nuclear protein dynamics

Echtenkamp, F. J. & Freeman, B. C., Jan 1 2014, In : Current Protein and Peptide Science. 15, 3, p. 216-224 9 p.

Research output: Contribution to journalArticle

Molecular Chaperones
Nuclear Proteins
Proteins
Foster Home Care
Accessories

Molecular analysis of multiple CYP6B genes from polyphagous Papilio species

Li, W., Berenbaum, M. R. & Schuler, M. A., Sep 6 2001, In : Insect Biochemistry and Molecular Biology. 31, 10, p. 999-1011 13 p.

Research output: Contribution to journalArticle

Papilio glaucus
Papilio
psoralens
Genes
Methoxsalen

Molecular analysis of mouse rab11b: A new type of mammalian ypt/rab protein

Lai, F., Stubbs, L. & Artzt, K., Aug 1994, In : Genomics. 22, 3, p. 610-616 7 p.

Research output: Contribution to journalArticle

Genes
Proteins
Chromosomes, Human, Pair 17
Chromosomes, Human, Pair 1
Protein Sequence Analysis

Molecular analysis of dicot and monocot small nuclear RNA populations.

Egeland, D. B., Sturtevant, A. P. & Schuler, M. A., Jun 1989, In : The Plant cell. 1, 6, p. 633-643 11 p.

Research output: Contribution to journalArticle

small nuclear RNA
Small Nuclear RNA
Magnoliopsida
Liliopsida
Population
Methoxsalen
Pheromones
Insecticides
Cytochrome P-450 Enzyme System
Zea mays

Molecular, phylogenetic and developmental analyses of Sall proteins in bilaterians

Lorente-Sorolla, J., Truchado-Garcia, M., Perry, K. J., Henry, J. Q. & Grande, C., Apr 10 2018, In : EvoDevo. 9, 1, 9.

Research output: Contribution to journalArticle

Zinc Fingers
Snails
zinc finger motif
phylogenetics
protein

Modulation of histone acetylation by [4-(acetylamino)-N-(2-amino-phenyl) benzamide] in HCT-8 colon carcinoma

Kraker, A. J., Mizzen, C. A., Hartl, B. G., Miin, J., Allis, C. D. & Merriman, R. L., Apr 1 2003, In : Molecular Cancer Therapeutics. 2, 4, p. 401-408 8 p.

Research output: Contribution to journalArticle

Acetylation
Histones
Colon
Carcinoma
Histone Deacetylase 2

Modified spiral cleavage: The duet cleavage pattern and early blastomere fates in the acoel turbellarian Neochildia fusca

Boyer, B. C., Henry, J. Q. & Martindale, M. Q., Jan 1 1996, In : Biological Bulletin. 191, 2, p. 285-286 2 p.

Research output: Contribution to journalArticle

cleavage

Modified nodal integral method for the three-dimensional, time-dependent, incompressible Navier-Stokes equations

Wang, F. & Rizwan-Uddin, Jan 2005, In : Nuclear Science and Engineering. 149, 1, p. 107-114 8 p.

Research output: Contribution to journalArticle

Navier Stokes equations
Ordinary differential equations
Prisms
Partial differential equations
Convection

Modifications of H3 and H4 during chromatin replication, nucleosome assembly, and histone exchange

Benson, L. J., Gu, Y., Yakovleva, T., Tong, K., Barrows, C., Strack, C. L., Cook, R. G., Mizzen, C. A. & Annunziato, A. T., Apr 7 2006, In : Journal of Biological Chemistry. 281, 14, p. 9287-9296 10 p.

Research output: Contribution to journalArticle

Histone Code
Nucleosomes
Histones
Chromatin
Acetylation
Sf9 Cells
Baculoviridae
Anchors
cytochrome P-450
Cytochrome P-450 Enzyme System

Mitotic chromosome structure: Reproducibility of folding and symmetry between sister chromatids

Strukov, Y. G. & Belmont, A. S., Feb 18 2009, In : Biophysical journal. 96, 4, p. 1617-1628 12 p.

Research output: Contribution to journalArticle

Chromosome Structures
Chromatids
Chromosomes
Metaphase
Chromatin

MIR100 host gene-encoded lncRNAs regulate cell cycle by modulating the interaction between HuR and its target mRNAs

Sun, Q., Tripathi, V., Yoon, J. H., Singh, D. K., Hao, Q., Min, K. W., Davila, S., Zealy, R. W., Li, X. L., Polycarpou-Schwarz, M., Lehrmann, E., Zhang, Y., Becker, K. G., Freier, S. M., Zhu, Y., Diederichs, S., Prasanth, S. G., Lal, A., Gorospe, M. & Prasanth, K. V., Jan 1 2018, In : Nucleic acids research. 46, 19, p. 10405-10416 12 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
MicroRNAs
Cell Cycle
Messenger RNA
Genes

Mild performic acid oxidation enhances chromatographic and top down mass spectrometric analyses of histones

Pesavento, J. J., Garcia, B. A., Streeky, J. A., Kelleher, N. L. & Mizzen, C. A., Sep 1 2007, In : Molecular and Cellular Proteomics. 6, 9, p. 1510-1526 17 p.

Research output: Contribution to journalArticle

Histones
Oxidation
Post Translational Protein Processing
Electrospray ionization
Reverse-Phase Chromatography

Microtubule binding by dynactin is required for microtubule organization but not cargo transport

Kim, H., Ling, S. C., Rogers, G. C., Kural, C., Selvin, P. R., Rogers, S. L. & Gelfand, V. I., Feb 26 2007, In : Journal of Cell Biology. 176, 5, p. 641-651 11 p.

Research output: Contribution to journalArticle

Microtubules
Dyneins
Cytoplasmic Dyneins
Microtubule-Organizing Center
Cytochalasin D

MicroRNA-146b promotes myogenic differentiation and modulates multiple gene targets in muscle cells

Khanna, N., Ge, Y. & Chen, J., Jun 23 2014, In : PloS one. 9, 6, e100657.

Research output: Contribution to journalArticle

MicroRNAs
microRNA
myocytes
Muscle Cells
Muscle

Microfluidic devices for culturing primary mammalian neurons at low densities

Millet, L. J., Stewart, M. E., Sweedler, J. V., Nuzzo, R. G. & Gillette, M. U., Jan 1 2007, In : Lab on a chip. 7, 8, p. 987-994 8 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Polydimethylsiloxane
Microfluidics
Neurons
Biocompatibility

Methods for examining lens regeneration in xenopus

Henry, J. J., Perry, K. J. & Hamilton, P. W., Apr 2019, In : Cold Spring Harbor protocols. 2019, 4, p. 268-273 6 p.

Research output: Contribution to journalArticle

Xenopus
Lenses
Regeneration
Corneal Epithelium
Anura

Metabolism of myristicin by Depressaria pastinacella CYP6AB3v2 and inhibition by its metabolite

Mao, W., Zangerl, A. R., Berenbaum, M. R. & Schuler, M. A., Jun 1 2008, In : Insect Biochemistry and Molecular Biology. 38, 6, p. 645-651 7 p.

Research output: Contribution to journalArticle

Depressaria pastinacella
Enzyme inhibition
Metabolites
Pastinaca
Metabolism
Papilio polyxenes
psoralens
NADPH-Ferrihemoprotein Reductase
cytochrome P-450
NADP (coenzyme)

Melatonin signal transduction pathways require E-Box-Mediated transcription of Per1 and Per2 to reset the SCN clock at dusk

Kandalepas, P. C., Mitchell, J. W. & Gillette, M. U. G., Jun 2016, In : PloS one. 11, 6, e0157824.

Research output: Contribution to journalArticle

Signal transduction
Suprachiasmatic Nucleus
melatonin
Melatonin
Transcription

Melatonin directly resets the rat suprachiasmatic circadian clock in vitro

McArthur, A. J., Gillette, M. U. & Prosser, R. A., Nov 22 1991, In : Brain Research. 565, 1, p. 158-161 4 p.

Research output: Contribution to journalArticle

Circadian Clocks
Melatonin
Suprachiasmatic Nucleus
Biological Clocks
Pineal Gland

Melatonin desensitizes endogenous MT2 melatonin receptors in the rat suprachiasmatic nucleus: Relevance for defining the periods of sensitivity of the mammalian circadian clock to melatonin

Gerdin, M. J., Masana, M. I., Rivera-Bermúdez, M. A., Hudson, R. L., Earnest, D. J., Gillette, M. U. & Dubocovich, M. L., Nov 1 2004, In : FASEB Journal. 18, 14, p. 1646-1656 11 p.

Research output: Contribution to journalArticle

Melatonin MT2 Receptor
Circadian Clocks
Suprachiasmatic Nucleus
melatonin
Melatonin

Melatonin action and signal transduction in the rat suprachiasmatic circadian clock: Activation of protein kinase C at dusk and dawn

Mcarthur, A. J., Hunt, A. E. & Gillette, M. U., Jan 1 1997, In : Endocrinology. 138, 2, p. 627-634 8 p.

Research output: Contribution to journalArticle

Circadian Clocks
Melatonin
Protein Kinase C
Signal Transduction
Suprachiasmatic Nucleus

Mediation of pyrethroid insecticide toxicity to honey bees (Hymenoptera: Apidae) by cytochrome P450 monooxygenases

Johnson, R. M., Wen, Z., Schuler, M. A. & Berenbaum, M. R., Aug 2006, In : Journal of economic entomology. 99, 4, p. 1046-1050 5 p.

Research output: Contribution to journalArticle

pyrethroid insecticides
pyrethroid
Apidae
honey
fluvalinate

Mechanistic target of rapamycin controls homeostasis of adipogenesis

Yoon, M. S., Zhang, C., Sun, Y., Schoenherr, C. J. & Chen, J., Aug 1 2013, In : Journal of Lipid Research. 54, 8, p. 2166-2173 8 p.

Research output: Contribution to journalArticle

Adipogenesis
Sirolimus
Homeostasis
Peroxisome Proliferator-Activated Receptors
CCAAT-Enhancer-Binding Proteins

Mechanical force affects expression of an in vitro metastasis-like phenotype in HCT-8 cells

Tang, X., Kuhlenschmidt, T. B., Zhou, J., Bell, P., Wang, F., Kuhlenschmidt, M. S. & Saif, T. A., Oct 20 2010, In : Biophysical journal. 99, 8, p. 2460-2469 10 p.

Research output: Contribution to journalArticle

Neoplasm Metastasis
Phenotype
Cadherins
In Vitro Techniques
Cultured Cells

Maximum likelihood estimation of molecular motor kinetics from staircase dwell-time sequences

Milescu, L. S., Yildiz, A., Selvin, P. R. & Sachs, F., Jan 1 2006, In : Biophysical journal. 91, 4, p. 1156-1168 13 p.

Research output: Contribution to journalArticle

Likelihood Functions
Adenosine Triphosphate
Dyneins
Kinesin
Proton-Translocating ATPases

Material properties of the cell dictate stress-induced spreading and differentiation in embryonic stemcells

Chowdhury, F., Na, S., Li, D., Poh, Y. C., Tanaka, T. S., Wang, F. & Wang, N., Jan 2010, In : Nature Materials. 9, 1, p. 82-88 7 p.

Research output: Contribution to journalArticle

Stem cells
Materials properties
stem cells
cells
softness

Mass spectrometry-based discovery of circadian peptides

Hatcher, N. G., Atkins, N., Annangudi, S. P., Forbes, A. J., Kelleher, N. L., Gillette, M. U. & Sweedler, J. V., Aug 26 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 34, p. 12527-12532 6 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Mass Spectrometry
Peptides
Circadian Clocks
Solid Phase Extraction