Research Output

Filter
Article

Polypurine-repeat-containing RNAs: A novel class of long non-coding RNA in mammalian cells

Zheng, R., Shen, Z., Tripathi, V., Xuan, Z., Freier, S. M., Bennett, C. F., Prasanth, S. G. & Prasanth, K. V., Nov 1 2010, In : Journal of cell science. 123, 21, p. 3734-3744 11 p.

Research output: Contribution to journalArticle

Polyelectrolyte theory and chromatin-DNA quaternary structure: Role of ionic strength and Hl histone

Belmont, A. & Nicolini, C., May 21 1981, In : Journal of Theoretical Biology. 90, 2, p. 169-179 11 p.

Research output: Contribution to journalArticle

Polarization effect on position accuracy of fluorophore localization

Enderlein, J., Toprak, E. & Selvin, P. R., Jan 1 2006, In : Optics Express. 14, 18, p. 8111-8120 10 p.

Research output: Contribution to journalArticle

Polarity and proliferation are controlled by distinct signaling pathways downstream of PI3-kinase in breast epithelial tumor cells

Liu, H., Radisky, D. C., Wang, F. & Bissell, M. J., Feb 16 2004, In : Journal of Cell Biology. 164, 4, p. 603-612 10 p.

Research output: Contribution to journalArticle

PLD regulates myoblast differentiation through the mTOR-IGF2 pathway

Yoon, M. S. & Chen, J., Feb 1 2008, In : Journal of cell science. 121, 3, p. 282-289 8 p.

Research output: Contribution to journalArticle

PLD1 Regulates mTOR Signaling and Mediates Cdc42 Activation of S6K1

Fang, Y., Park, I. H., Wu, A. L., Du, G., Huang, P., Frohman, M. A., Walker, S. J., Brown, H. A. & Chen, J., Dec 2 2003, In : Current Biology. 13, 23, p. 2037-2044 8 p.

Research output: Contribution to journalArticle

Plant intron sequences: Evidence for distinct groups of introns

Hanley, B. A. & Schuler, M. A., Jul 25 1988, In : Nucleic acids research. 16, 14, p. 7159-7176 18 p.

Research output: Contribution to journalArticle

Plant cytochrome P450 monooxygenases

Schuler, M. A., Jan 1 1996, In : Critical Reviews in Plant Sciences. 15, 3, p. 235-284 50 p.

Research output: Contribution to journalArticle

Plant allelochemicals differentially regulate Helicoverpa zea cytochrome P450 genes

Li, X., Berenbaum, M. R. & Schuler, M. A., Aug 24 2002, In : Insect Molecular Biology. 11, 4, p. 343-351 9 p.

Research output: Contribution to journalArticle

Pituitary adenylyl cyclase-activating peptide: A pivotal modulator of glutamatergic regulation of the suprachiasmatic circadian clock

Chen, D., Buchanan, G. F., Ding, J. M., Hannibal, J. & Gillette, M. U., Nov 9 1999, In : Proceedings of the National Academy of Sciences of the United States of America. 96, 23, p. 13468-13473 6 p.

Research output: Contribution to journalArticle

Pituitary adenylate cyclase-activating peptide (PACAP) in the retinohypothalamic tract: A potential daytime regulator of the biological clock

Hannibal, J., Ding, J. M., Chen, D., Fahrenkrug, J., Larsen, P. J., Gillette, M. U. & Mikkelsen, J. D., Jan 1 1997, In : Journal of Neuroscience. 17, 7, p. 2637-2644 8 p.

Research output: Contribution to journalArticle

Open Access

Pituitary adenylate cyclase activating peptide (PACAP) in the retinohypothalamic tract: A daytime regulator of the biological clock

Hannibal, J., Ding, J. M., Chen, D., Fahrenkrug, J., Larsen, P. J., Gillette, M. U. & Mikkelsen, J. D., Jan 1 1998, In : Annals of the New York Academy of Sciences. 865, p. 197-206 10 p.

Research output: Contribution to journalArticle

Pituitary Adenylate Cyclase-Activating Peptide (PACAP)-Glutamate Co-transmission Drives Circadian Phase-Advancing Responses to Intrinsically Photosensitive Retinal Ganglion Cell Projections by Suprachiasmatic Nucleus

Lindberg, P. T., Mitchell, J. W., Burgoon, P. W., Beaulé, C., Weihe, E., Schäfer, M. K. H., Eiden, L. E., Jiang, S. Z. & Gillette, M. U., Dec 6 2019, In : Frontiers in Neuroscience. 13, 1281.

Research output: Contribution to journalArticle

Open Access

Pin1 promotes histone H1 dephosphorylation and stabilizes its binding to chromatin

Raghuram, N., Strickfaden, H., McDonald, D., Williams, K., Fang, H., Mizzen, C., Hayes, J. J., Th'ng, J. & Hendzel, M. J., Oct 25 2013, In : Journal of Cell Biology. 203, 1, p. 57-71 15 p.

Research output: Contribution to journalArticle

Pin1 Binding to Phosphorylated PSD-95 Regulates the Number of Functional Excitatory Synapses

Delgado, J. Y., Nall, D. & Selvin, P. R., Mar 13 2020, In : Frontiers in Molecular Neuroscience. 13, 10.

Research output: Contribution to journalArticle

Open Access

PIAS1 confers DNA-binding specificity on the Msx1 homeoprotein

Lee, H., Quinn, J. C., Prasanth, K. V., Swiss, V. A., Economides, K. D., Camacho, M. M., Spector, D. L. & Abate-Shen, C., Apr 1 2006, In : Genes and Development. 20, 7, p. 784-794 11 p.

Research output: Contribution to journalArticle

Physico-chemical model for DNA alkaline elution: New experimental evidence and differential role of DNA length, chain flexibility and superpacking

Nicolini, C., Belmont, A., Zietz, S., Maura, A., Ping, A., Robbiano, L. & Brambilla, G., Jan 21 1983, In : Journal of Theoretical Biology. 100, 2, p. 341-357 17 p.

Research output: Contribution to journalArticle

pH-sensitive, Ca2+/calmodulin-dependent phosphorylation of unique protein in molluscan nervous system

Gillette, R., Gillette, M., Lipeski, L. & Connor, J., Dec 6 1990, In : BBA - General Subjects. 1036, 3, p. 207-212 6 p.

Research output: Contribution to journalArticle

Photon-separation to enhance the spatial resolution of pulsed STED microscopy

Tortarolo, G., Sun, Y., Teng, K. W., Ishitsuka, Y., Lanzanó, L., Selvin, P. R., Barbieri, B., Diaspro, A. & Vicidomini, G., Jan 28 2019, In : Nanoscale. 11, 4, p. 1754-1761 8 p.

Research output: Contribution to journalArticle

Phosphorylation of linker histone H1 regulates gene expression in vivo by mimicking H1 removal

Dou, Y., Mizzen, C. A., Abrams, M., Allis, C. D. & Gorovsky, M. A., Oct 1999, In : Molecular cell. 4, 4, p. 641-647 7 p.

Research output: Contribution to journalArticle

Phosphorylation of histone H3 at serine 10 is correlated with chromosome condensation during mitosis and meiosis in Tetrahymena

Wei, Y., Mizzen, C. A., Cook, R. G., Gorovsky, M. A. & Allis, C. D., Jun 23 1998, In : Proceedings of the National Academy of Sciences of the United States of America. 95, 13, p. 7480-7484 5 p.

Research output: Contribution to journalArticle

Phosphorylation of FMRP inhibits association with Dicer

Cheever, A. & Ceman, S., Mar 1 2009, In : RNA. 15, 3, p. 362-366 5 p.

Research output: Contribution to journalArticle

Phosphorylation influences the translation state of FMRP-associated polyribosomes

Ceman, S., O'Donnell, W. T., Reed, M., Patton, S., Pohl, J. & Warren, S. T., Dec 15 2003, In : Human molecular genetics. 12, 24, p. 3295-3305 11 p.

Research output: Contribution to journalArticle

Phosphorylation-dephosphorylation cycle of HP1á governs accurate mitotic progression

Chakraborty, A. & Prasanth, S. G., Jun 1 2014, In : Cell Cycle. 13, 11, p. 1663-1670 8 p.

Research output: Contribution to journalArticle

Phospholipase D1 is an effector of Rheb in the mTOR pathway

Sun, Y., Fang, Y., Yoon, M. S., Zhang, C., Roccio, M., Zwartkruis, F. J., Armstrong, M., Brown, H. A. & Chen, J., Jun 17 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 24, p. 8286-8291 6 p.

Research output: Contribution to journalArticle

Phosphatidic acid-mediated mitogenic activation of mTOR signaling

Fang, Y., Vilella-Bach, M., Bachmann, R., Flanigan, A. & Chen, J., Nov 30 2001, In : Science. 294, 5548, p. 1942-1945 4 p.

Research output: Contribution to journalArticle

Phosphatidic acid activates mammalian target of rapamycin complex 1 (mTORC1) kinase by displacing FK506 binding protein 38 (FKBP38) and exerting an allosteric effect

Yoon, M. S., Sun, Y., Arauz, E., Jiang, Y. & Chen, J., Aug 26 2011, In : Journal of Biological Chemistry. 286, 34, p. 29568-29574 7 p.

Research output: Contribution to journalArticle

Phenotypic reversion or death of cancer cells by altering signaling pathways in three-dimensional contexts

Wang, F., Hansen, R. K., Radisky, D., Yoneda, T., Barcellos-Hoff, M. H., Petersen, O. W., Turley, E. A. & Bissell, M. J., Oct 2 2002, In : Journal of the National Cancer Institute. 94, 19, p. 1494-1503 10 p.

Research output: Contribution to journalArticle

Phenotypic consequences of deletion of the γ3, α5, or β3 subunit of the type A γ-aminobutyric acid receptor in mice

Culiat, C. T., Stubbs, L. J., Montgomery, C. S., Russell, L. B. & Rinchik, E. M., Mar 29 1994, In : Proceedings of the National Academy of Sciences of the United States of America. 91, 7, p. 2815-2818 4 p.

Research output: Contribution to journalArticle

Phase correlation imaging of unlabeled cell dynamics

Ma, L., Rajshekhar, G., Wang, R., Bhaduri, B., Sridharan, S., Mir, M., Chakraborty, A., Iyer, R., Prasanth, S., Millet, L., Gillette, M. U. & Popescu, G., Sep 12 2016, In : Scientific reports. 6, 32702.

Research output: Contribution to journalArticle

Pervasive combinatorial modification of histone H3 in human cells

Garcia, B. A., Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Jun 1 2007, In : Nature Methods. 4, 6, p. 487-489 3 p.

Research output: Contribution to journalArticle

Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes

Yin, P., Knolhoff, A. M., Rosenberg, H. J., Millet, L. J., Gillette, M. U. & Sweedler, J. V., Aug 3 2012, In : Journal of Proteome Research. 11, 8, p. 3965-3973 9 p.

Research output: Contribution to journalArticle

Peptides from purified soybean β-conglycinin inhibit fatty acid synthase by interaction with the thioesterase catalytic domain

Martinez-Villaluenga, C., Rupasinghe, S. G., Schuler, M. A. & Gonzalez De Mejia, E., Mar 1 2010, In : FEBS Journal. 277, 6, p. 1481-1493 13 p.

Research output: Contribution to journalArticle

Pdd1p associates with germline-restricted chromatin and a second novel anlagen-enriched protein in developmentally programmed DNA elimination structures

Smothers, J. F., Mizzen, C. A., Tubbert, M. M., Cook, R. G. & Allis, C. D., Dec 17 1997, In : Development. 124, 22, p. 4537-4545 9 p.

Research output: Contribution to journalArticle

PCR amplification and analysis of simple sequence length polymorphisms in mouse DNA using a single microchip device

Dunn, W. C., Jacobson, S. C., Waters, L. C., Kroutchinina, N., Khandurina, J., Foote, R. S., Justice, M. J., Stubbs, L. J. & Ramsey, J. M., Jan 1 2000, In : Analytical Biochemistry. 277, 1, p. 157-160 4 p.

Research output: Contribution to journalArticle

PCNA-mediated stabilization of E3 ligase RFWD3 at the replication fork is essential for DNA replication

Lin, Y. C., Wang, Y., Hsu, R., Giri, S., Wopat, S., Arif, M. K., Chakraborty, A., Prasanth, K. V. & Prasanth, S. G., Dec 26 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 52, p. 13282-13287 6 p.

Research output: Contribution to journalArticle

PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity

Yoon, J. H., De, S., Srikantan, S., Abdelmohsen, K., Grammatikakis, I., Kim, J., Kim, K. M., Noh, J. H., White, E. J. F., Martindale, J. L., Yang, X., Kang, M. J., Wood, W. H., Noren Hooten, N., Evans, M. K., Becker, K. G., Tripathi, V., Prasanth, K. V., Wilson, G. M., Tuschl, T. & 3 others, Ingolia, N. T., Hafner, M. & Gorospe, M., Jan 1 2014, In : Nature communications. 5, 5248.

Research output: Contribution to journalArticle

Paraspeckles modulate the intranuclear distribution of paraspeckle-associated Ctn RNA

Anantharaman, A., Jadaliha, M., Tripathi, V., Nakagawa, S., Hirose, T., Jantsch, M. F., Prasanth, S. G. & Prasanth, K. V., Sep 26 2016, In : Scientific reports. 6, 34043.

Research output: Contribution to journalArticle

Paracellular ion channel at the tight junction

Tang, V. W. & Goodenough, D. A., Mar 1 2003, In : Biophysical journal. 84, 3, p. 1660-1673 14 p.

Research output: Contribution to journalArticle

Open Access

p23/Sba1p protects against Hsp90 inhibitors independently of its intrinsic chaperone activity

Forafonov, F., Toogun, O. A., Grad, I., Suslova, E., Freeman, B. C. & Picard, D., May 1 2008, In : Molecular and cellular biology. 28, 10, p. 3446-3456 11 p.

Research output: Contribution to journalArticle

Overlapping but distinct patterns of histone acetylation by the human coactivators p300 and PCAF within nucleosomal substrates

Schiltz, R. L., Mizzen, C. A., Vassilev, A., Cook, R. G., Allis, C. D. & Nakatani, Y., Jan 15 1999, In : Journal of Biological Chemistry. 274, 3, p. 1189-1192 4 p.

Research output: Contribution to journalArticle

Overcoming steric hindrances during replication of peripheral heterochromatin

Zhironkina, O. A., Kurchashova, S. Y., Brattseva, A. L., Cherepaninets, V. D., Strelkova, O. S., Belmont, A. S. & Kireev, I. I., Mar 1 2015, In : Cell and Tissue Biology. 9, 2, p. 110-118 9 p.

Research output: Contribution to journalArticle

Over a century of neuron culture: From the hanging drop to microfluidic devices

Millet, L. J. & Gillette, M. U., Dec 1 2012, In : Yale Journal of Biology and Medicine. 85, 4, p. 501-521 21 p.

Research output: Contribution to journalArticle

Oscillatory behavior of neutrophils under opposing chemoattractant gradients supports a winner-take-all mechanism

Byrne, M. B., Kimura, Y., Kapoor, A., He, Y., Mattam, K. S., Hasan, K. M., Olson, L. N., Wang, F., Kenis, P. J. A. & Rao, C. V., Jan 21 2014, In : PloS one. 9, 1, e85726.

Research output: Contribution to journalArticle

Oscillation and light induction of timeless mRNA in the mammalian circadian clock.

Tischkau, S. A., Barnes, J. A., Lin, F. J., Myers, E. M., Barnes, J. W., Meyer-Bernstein, E. L., Hurst, W. J., Burgoon, P. W., Chen, D., Sehgal, A. & Gillette, M. U., Jun 15 1999, In : The Journal of neuroscience : the official journal of the Society for Neuroscience. 19, 12, p. RC15

Research output: Contribution to journalArticle

"ORCanization" On heterochromatin linking DNA replication initiation to chromatin organization

Chakraborty, A., Shen, Z. & Prasanth, S. G., Jun 2011, In : Epigenetics. 6, 6, p. 665-670 6 p.

Research output: Contribution to journalArticle

Orc5 induces large-scale chromatin decondensation in a GCN5-dependent manner

Giri, S., Chakraborty, A., Sathyan, K. M., Prasanth, K. V. & Prasanth, S. G., Jan 1 2016, In : Journal of cell science. 129, 2, p. 417-429 13 p.

Research output: Contribution to journalArticle

Orc2 protects ORCA from ubiquitin-mediated degradation

Shen, Z. & Prasanth, S. G., Oct 1 2012, In : Cell Cycle. 11, 19, p. 3578-3589 12 p.

Research output: Contribution to journalArticle

Orc1 controls centriole and centrosome copy number in human cells

Hemerly, A. S., Prasanth, S. G., Siddiqui, K. & Stillman, B., Feb 6 2009, In : Science. 323, 5915, p. 789-793 5 p.

Research output: Contribution to journalArticle

Orc1 binding to mitotic chromosomes precedes spatial patterning during G1 phase and assembly of the origin recognition complex in human cells

Kara, N., Hossain, M., Prasanth, S. G. & Stillman, B., May 8 2015, In : Journal of Biological Chemistry. 290, 19, p. 12355-12369 15 p.

Research output: Contribution to journalArticle