Research Output 1969 2020

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Phase correlation imaging of unlabeled cell dynamics

Ma, L., Rajshekhar, G., Wang, R., Bhaduri, B., Sridharan, S., Mir, M., Chakraborty, A., Iyer, R., Prasanth, S., Millet, L., Gillette, M. U. & Popescu, G., Sep 12 2016, In : Scientific reports. 6, 32702.

Research output: Contribution to journalArticle

Polymerization
Actins
Time-Lapse Imaging
Fluorescence

Pervasive combinatorial modification of histone H3 in human cells

Garcia, B. A., Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Jun 1 2007, In : Nature Methods. 4, 6, p. 487-489 3 p.

Research output: Contribution to journalArticle

Histones
Cells
Histone Code
Butyrates
Tandem Mass Spectrometry

Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes

Yin, P., Knolhoff, A. M., Rosenberg, H. J., Millet, L. J., Gillette, M. U. & Sweedler, J. V., Aug 3 2012, In : Journal of Proteome Research. 11, 8, p. 3965-3973 9 p.

Research output: Contribution to journalArticle

Astrocytes
Rats
Cells
Cell Line
Peptides

Peptides from purified soybean β-conglycinin inhibit fatty acid synthase by interaction with the thioesterase catalytic domain

Martinez-Villaluenga, C., Rupasinghe, S. G., Schuler, M. A. & Gonzalez De Mejia, E., Mar 1 2010, In : FEBS Journal. 277, 6, p. 1481-1493 13 p.

Research output: Contribution to journalArticle

Fatty Acid Synthases
Soybeans
Catalytic Domain
Peptides
Inhibitory Concentration 50

Pdd1p associates with germline-restricted chromatin and a second novel anlagen-enriched protein in developmentally programmed DNA elimination structures

Smothers, J. F., Mizzen, C. A., Tubbert, M. M., Cook, R. G. & Allis, C. D., Dec 17 1997, In : Development. 124, 22, p. 4537-4545 9 p.

Research output: Contribution to journalArticle

Chromatin
DNA
protein
Proteins
Macronucleus

PCNA-mediated stabilization of E3 ligase RFWD3 at the replication fork is essential for DNA replication

Lin, Y. C., Wang, Y., Hsu, R., Giri, S., Wopat, S., Arif, M. K., Chakraborty, A., Kannanganattu, P. K. & Prasanth, S. G., Dec 26 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 52, p. 13282-13287 6 p.

Research output: Contribution to journalArticle

Ubiquitin-Protein Ligases
Proliferating Cell Nuclear Antigen
DNA Replication
Replication Protein A
S Phase

PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity

Yoon, J. H., De, S., Srikantan, S., Abdelmohsen, K., Grammatikakis, I., Kim, J., Kim, K. M., Noh, J. H., White, E. J. F., Martindale, J. L., Yang, X., Kang, M. J., Wood, W. H., Noren Hooten, N., Evans, M. K., Becker, K. G., Tripathi, V., Prasanth, K. V., Wilson, G. M., Tuschl, T. & 3 others, Ingolia, N. T., Hafner, M. & Gorospe, M., Jan 1 2014, In : Nature communications. 5, 5248.

Research output: Contribution to journalArticle

Ribonucleosides
genome
crosslinking
Immunoprecipitation
Crosslinking

Paraspeckles modulate the intranuclear distribution of paraspeckle-associated Ctn RNA

Anantharaman, A., Jadaliha, M., Tripathi, V., Nakagawa, S., Hirose, T., Jantsch, M. F., Prasanth, S. G. & Prasanth, K. V., Sep 26 2016, In : Scientific reports. 6, 34043.

Research output: Contribution to journalArticle

RNA
Long Noncoding RNA
Nuclear RNA
Proteasome Endopeptidase Complex
Lighting

p23/Sba1p protects against Hsp90 inhibitors independently of its intrinsic chaperone activity

Forafonov, F., Toogun, O. A., Grad, I., Suslova, E., Freeman, B. C. & Picard, D., May 1 2008, In : Molecular and cellular biology. 28, 10, p. 3446-3456 11 p.

Research output: Contribution to journalArticle

Molecular Chaperones
Essential Genes
Eukaryota
Saccharomyces cerevisiae
Adenosine Triphosphatases

Overlapping but distinct patterns of histone acetylation by the human coactivators p300 and PCAF within nucleosomal substrates

Schiltz, R. L., Mizzen, C. A., Vassilev, A., Cook, R. G., Allis, C. D. & Nakatani, Y., Jan 15 1999, In : Journal of Biological Chemistry. 274, 3, p. 1189-1192 4 p.

Research output: Contribution to journalArticle

Acetylation
Histones
Lysine
Substrates
Chromatin

Overcoming steric hindrances during replication of peripheral heterochromatin

Zhironkina, O. A., Kurchashova, S. Y., Brattseva, A. L., Cherepaninets, V. D., Strelkova, O. S., Belmont, A. S. & Kireev, I. I., Mar 1 2015, In : Cell and Tissue Biology. 9, 2, p. 110-118 9 p.

Research output: Contribution to journalArticle

Heterochromatin
Lamins
Chromatin
Nuclear Lamina
S Phase

Over a century of neuron culture: From the hanging drop to microfluidic devices

Millet, L. J. & Gillette, M. L., Dec 1 2012, In : Yale Journal of Biology and Medicine. 85, 4, p. 501-521 21 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
Neurons
Brain
Hydrogels

Oscillatory behavior of neutrophils under opposing chemoattractant gradients supports a winner-take-all mechanism

Byrne, M. B., Kimura, Y., Kapoor, A., He, Y., Mattam, K. S., Hasan, K. M., Olson, L. N., Wang, F., Kenis, P. J. A. & Rao, C. V., Jan 21 2014, In : PloS one. 9, 1, e85726.

Research output: Contribution to journalArticle

chemoattractants
Chemotactic Factors
neutrophils
chemotaxis
Neutrophils

Oscillation and light induction of timeless mRNA in the mammalian circadian clock.

Tischkau, S. A., Barnes, J. A., Lin, F. J., Myers, E. M., Barnes, J. W., Meyer-Bernstein, E. L., Hurst, W. J., Burgoon, P. W., Chen, D., Sehgal, A. & Gillette, M. U., Jun 15 1999, In : The Journal of neuroscience : the official journal of the Society for Neuroscience. 19, 12, p. RC15

Research output: Contribution to journalArticle

Circadian Clocks
Light
Messenger RNA
Suprachiasmatic Nucleus
Circadian Rhythm

"ORCanization" On heterochromatin linking DNA replication initiation to chromatin organization

Chakraborty, A., Shen, Z. & Prasanth, S. G., Jun 2011, In : Epigenetics. 6, 6, p. 665-670 6 p.

Research output: Contribution to journalArticle

Origin Recognition Complex
Heterochromatin
DNA Replication
Chromatin
Histone Code

Orc5 induces large-scale chromatin decondensation in a GCN5-dependent manner

Giri, S., Chakraborty, A., Sathyan, K. M., Prasanth, K. V. & Prasanth, S. G., Jan 1 2016, In : Journal of cell science. 129, 2, p. 417-429 13 p.

Research output: Contribution to journalArticle

Chromatin
Origin Recognition Complex
Histones
Centrosome
Cytokinesis

Orc2 protects ORCA from ubiquitin-mediated degradation

Shen, Z. & Prasanth, S. G., Oct 1 2012, In : Cell Cycle. 11, 19, p. 3578-3589 12 p.

Research output: Contribution to journalArticle

Origin Recognition Complex
Ubiquitin
Ubiquitination
Chromatin
Cell Cycle

Orc1 controls centriole and centrosome copy number in human cells

Hemerly, A. S., Prasanth, S. G., Siddiqui, K. & Stillman, B., Feb 6 2009, In : Science. 323, 5915, p. 789-793 5 p.

Research output: Contribution to journalArticle

Centrioles
Centrosome
DNA Replication
Origin Recognition Complex
Cyclin A

Orc1 binding to mitotic chromosomes precedes spatial patterning during G1 phase and assembly of the origin recognition complex in human cells

Kara, N., Hossain, M., Prasanth, S. G. & Stillman, B., May 8 2015, In : Journal of Biological Chemistry. 290, 19, p. 12355-12369 15 p.

Research output: Contribution to journalArticle

Origin Recognition Complex
G1 Phase
Chromosomes
Cells
Chromatin

Optical measurement of cycle-dependent cell growth

Mir, M., Wang, Z., Shen, Z., Bednarz, M., Bashir, R., Golding, I., Prasanth, S. G. & Popescu, G., Aug 9 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 32, p. 13124-13129 6 p.

Research output: Contribution to journalArticle

Cell Cycle
Growth
Interference Microscopy
Cell Size
Light

Optical excitation and detection of neuronal activity

Hu, C., Sam, R., Shan, M., Nastasa, V., Wang, M., Kim, T., Gillette, M., Sengupta, P. & Popescu, G., Mar 2019, In : Journal of Biophotonics. 12, 3, e201800269.

Research output: Contribution to journalArticle

Optogenetics
Photoexcitation
stimulation
Electrophysiology
Imaging techniques

One-dimensional deterministic transport in neurons measured by dispersion-relation phase spectroscopy

Wang, R., Wang, Z., Leigh, J., Sobh, N., Millet, L., Gillette, M. U., Levine, A. J. & Popescu, G., Sep 21 2011, In : Journal of Physics Condensed Matter. 23, 37, 374107.

Research output: Contribution to journalArticle

neurons
Neurons
Spectroscopy
cargo
spectroscopy

Oligodeoxynucleotide methods for analyzing the circadian clock in the suprachiasmatic nucleus

Tischkau, S. A. & Gillette, M. L., Jan 1 2005, In : Methods in enzymology. 393, p. 593-610 18 p., 31.

Research output: Contribution to journalArticle

Circadian Clocks
Suprachiasmatic Nucleus
Oligodeoxyribonucleotides
Periodicity
Clocks

Nuclear ultrastructure: transmission electron microscopy and image analysis

Belmont, A. S., Dec 1 1998, In : Methods in Cell Biology. 53, p. 99-124 26 p.

Research output: Contribution to journalArticle

Interference Microscopy
Tissue Fixation
Computer-Assisted Image Processing
Cell Nucleus
Transmission Electron Microscopy

Nuclear speckle fusion via long-range directional motion regulates speckle morphology after transcriptional inhibition

Kim, J., Han, K. Y., Khanna, N., Ha, T. & Belmont, A. S., Apr 1 2019, In : Journal of cell science. 132, 8, 226563.

Research output: Contribution to journalArticle

Open Access
Nuclear Fusion
Articular Range of Motion
Chromatin
Actins
Hot Temperature

Nuclear organization and dynamics of 7SK RNA in regulating gene expression

Prasanth, K. V., Camiolo, M., Chan, G., Tripathi, V., Denis, L., Nakamura, T., Hübner, M. R. & Spector, D. L., Dec 1 2010, In : Molecular biology of the cell. 21, 23, p. 4184-4196 13 p.

Research output: Contribution to journalArticle

Positive Transcriptional Elongation Factor B
RNA
RNA Polymerase II
Gene Expression
Reporter Genes

Nspl1, a new Z-band-associated protein

Geisler, J. G., Palmer, R. J., Stubbs, L. J. & Mucenski, M. L., Dec 1 1999, In : Journal of Muscle Research and Cell Motility. 20, 7, p. 661-668 8 p.

Research output: Contribution to journalArticle

Green Fluorescent Proteins
Proteins
Complementary DNA
Skeletal Muscle Fibers
Muscle

Novel domains in the hnRNP G/RBMX protein with distinct roles in RNA binding and targeting nascent transcripts

Kanhoush, R., Beenders, B., Perrin, C., Moreau, J., Bellini, M. & Penrad-Mobayed, M., Jan 1 2010, In : Nucleus. 1, 1, p. 109-122 14 p.

Research output: Contribution to journalArticle

Ribonucleoproteins
RNA
Proteins
RNA Precursors
RNA Probes

Nontranslational function of leucyl-tRNA synthetase regulates myogenic differentiation and skeletal muscle regeneration

Son, K., You, J. S., Yoon, M. S., Dai, C., Kim, J. H., Khanna, N., Banerjee, A., Martinis, S. A., Han, G., Han, J. M., Kim, S. & Chen, J., May 1 2019, In : Journal of Clinical Investigation. 129, 5, p. 2088-2093 6 p.

Research output: Contribution to journalArticle

Open Access
Amino Acyl-tRNA Synthetases
Regeneration
Skeletal Muscle
Muscle Development
Transfer RNA Aminoacylation

NLRP12 promotes mouse neutrophil differentiation through regulation of non-canonical NF-κB and MAPKERK1/2 signaling

Wang, Q., Liu, F., Zhang, M., Zhou, P., Xu, C., Li, Y., Bian, L., Liu, Y., Yao, Y., Wang, F., Fang, Y. & Li, D., Jan 13 2018, In : International Journal of Biological Sciences. 14, 2, p. 147-155 9 p.

Research output: Contribution to journalArticle

Leucine
leucine
neutrophils
Neutrophils
Nucleotides

Nitric oxide synthase inhibitor blocks light-induced phase shifts of the circadian activity rhythm, but not c-fos expression in the suprachiasmatic nucleus of the Syrian hamster

Todd Weber, E., Gannon, R. L., Michel, A. M., Gillette, M. U. & Rea, M. A., Sep 18 1995, In : Brain Research. 692, 1-2, p. 137-142 6 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Mesocricetus
Circadian Rhythm
Nitric Oxide Synthase
Light

Nitric oxide synthase imunolabeling in the molluscan CNS and peripheral tissues

Hurst, W. J., Moroz, L. L., Gillette, M. U. & Gillette, R., Aug 27 1999, In : Biochemical and Biophysical Research Communications. 262, 2, p. 545-548 4 p.

Research output: Contribution to journalArticle

Pleurobranchaea
Aplysia
Nitric Oxide Synthase
Labeling
Esophagus

Nitric oxide synthase activity in the molluscan CNS

Moroz, L. L., Chen, D., Gillette, M. L. & Gillette, R., Feb 1996, In : Journal of Neurochemistry. 66, 2, p. 873-876 4 p.

Research output: Contribution to journalArticle

Pleurobranchaea
Citrulline
Nitric Oxide Synthase
Neurons
Arginine
Silicon
Datasets
Direction compound

New light on an old paradox: Site-dependent effects of carbachol on circadian rhythms

Buchanan, G. F. & Gillette, M. U., Jun 2005, In : Experimental Neurology. 193, 2, p. 489-496 8 p.

Research output: Contribution to journalArticle

Carbachol
Circadian Rhythm
Suprachiasmatic Nucleus
Cholinergic Agents
Light

New 9- or 10-dentate luminescent lanthanide chelates

Ge, P. & Selvin, P. R., May 1 2008, In : Bioconjugate Chemistry. 19, 5, p. 1105-1111 7 p.

Research output: Contribution to journalArticle

Lanthanoid Series Elements
Rare earth elements
Ions
Molecules
Antennas

Neutrophil microtubules suppress polarity and enhance directional migration

Xu, J., Wang, F., Van Keymeulen, A., Rentel, M. & Bourne, H. R., May 10 2005, In : Proceedings of the National Academy of Sciences of the United States of America. 102, 19, p. 6884-6889 6 p.

Research output: Contribution to journalArticle

Nocodazole
Microtubules
methionyl-leucyl-phenylalanine
Neutrophils
Pseudopodia

Neuropeptidomics of the supraoptic rat nucleus

Bora, A., Annangudi, S. P., Millet, L. J., Rubakhin, S. S., Forbes, A. J., Kelleher, N. L., Gillette, M. U. & Sweedler, J. V., Nov 1 2008, In : Journal of Proteome Research. 7, 11, p. 4992-5003 12 p.

Research output: Contribution to journalArticle

Supraoptic Nucleus
Rats
Peptides
Tandem Mass Spectrometry
Vasopressins

Neuronal leucine-rich repeat 6 (XlNLRR-6) is required for late lens and retina development in Xenopus laevis

Wolfe, A. D. & Henry, J. J., Apr 1 2006, In : Developmental Dynamics. 235, 4, p. 1027-1041 15 p.

Research output: Contribution to journalArticle

Xenopus laevis
Leucine
Lenses
Retina
Morpholinos

Neuromolecular responses to social challenge: Common mechanisms across mouse, stickleback fish, and honey bee

Rittschof, C. C., Bukhari, S. A., Sloofman, L. G., Troy, J. M., Caetano-Anollés, D., Cash-Ahmed, A., Kent, M., Lu, X., Sanogo, Y. O., Weisner, P. A., Zhang, H., Bell, A. M., Ma, J., Sinha, S., Robinson, G. E. & Stubbs, L., Dec 16 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 50, p. 17929-17934 6 p.

Research output: Contribution to journalArticle

Smegmamorpha
Honey
Bees
Fishes
Energy Metabolism

Neural and eye-specific defects associated with loss of the Imitation Switch (ISWI) chromatin remodeler in Xenopus laevis

Dirscherl, S. S., Henry, J. J. & Krebs, J. E., Nov 1 2005, In : Mechanisms of Development. 122, 11, p. 1157-1170 14 p.

Research output: Contribution to journalArticle

Xenopus laevis
Xenopus
Chromatin
Adenosine Triphosphate
Switch Genes

N-cadherin regulates spatially polarized signals through distinct p120ctn and β-catenin-dependent signalling pathways

Ouyang, M., Lu, S., Kim, T., Chen, C. E., Seong, J., Leckband, D. E., Wang, F., Reynolds, A. B., Schwartz, M. A. & Wang, Y., Apr 10 2013, In : Nature communications. 4, 1589.

Research output: Contribution to journalArticle

Catenins
1-Phosphatidylinositol 4-Kinase
Cadherins
Phosphatidylinositols
myosins

Natural antisense RNA promotes 3′ end processing and maturation of MALAT1 lncRNA

Zong, X., Nakagawa, S., Freier, S. M., Fei, J., Ha, T., Prasanth, S. G. & Prasanth, K. V., Jan 29 2016, In : Nucleic acids research. 44, 6, p. 2898-2908 11 p.

Research output: Contribution to journalArticle

RNA 3' End Processing
Long Noncoding RNA
Antisense RNA
Ribonuclease P
RNA

Nanometre localization of single ReAsH molecules

Park, H., Hanson, G. T., Duff, S. R. & Selvin, P. R., Dec 1 2004, In : Journal of Microscopy. 216, 3, p. 199-205 7 p.

Research output: Contribution to journalArticle

cysteinylcysteine
Calmodulin
Photons
Coloring Agents
Observation

Nanometer localization of single fluorescent proteins: Evidence that myosin V walks hand-over-hand via telemark configuration

Snyder, G. E., Sakamoto, T., Hammer, J. A., Sellers, J. R. & Selvin, P. R., Sep 2004, In : Biophysical journal. 87, 3, p. 1776-1783 8 p.

Research output: Contribution to journalArticle

Myosin Type V
Myosins
Hand
Proteins
Actin Cytoskeleton

Myrosinase in horseradish (Armoracia rusticana) root: Isolation of a full-length cDNA and its heterologous expression in Spodoptera frugiperda insect cells

Li, X., Wen, Z., Bohnert, H. J., Schuler, M. A. & Kushad, M. M., Jun 1 2007, In : Plant Science. 172, 6, p. 1095-1102 8 p.

Research output: Contribution to journalArticle

Armoracia
Armoracia rusticana
horseradish
thioglucosidase
Spodoptera

Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization

Yildiz, A., Forkey, J. N., McKinney, S. A., Ha, T., Goldman, Y. E. & Selvin, P. R., Jun 27 2003, In : Science. 300, 5628, p. 2061-2065 5 p.

Research output: Contribution to journalArticle

Myosin Type V
Hand
Actins
Coloring Agents
Adenosine Triphosphate

Myosin VI undergoes a 180° power stroke implying an uncoupling of the front lever arm

Reifenberger, J. G., Toprak, E., Kim, H. J., Safer, D., Sweeney, H. L. & Selvin, P. R., Dec 4 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 43, p. 18255-18260 6 p.

Research output: Contribution to journalArticle

Stroke
Head
Light
Rhodamines
Solar System

Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin

Yildiz, A., Park, H., Safer, D., Yang, Z., Chen, L. Q., Selvin, P. R. & Sweeney, H. L., Sep 3 2004, In : Journal of Biological Chemistry. 279, 36, p. 37223-37226 4 p.

Research output: Contribution to journalArticle

Actins
Hand
Fluorophores
Optical Imaging
Calmodulin

Myosin VI Dimerization Triggers an Unfolding of a Three-Helix Bundle in Order to Extend Its Reach

Mukherjea, M., Llinas, P., Kim, H. J., Travaglia, M., Safer, D., Ménétrey, J., Franzini-Armstrong, C., Selvin, P. R., Houdusse, A. & Sweeney, H. L., Aug 14 2009, In : Molecular cell. 35, 3, p. 305-315 11 p.

Research output: Contribution to journalArticle

Dimerization
Actins
Myosins
Reference Values
Fluorescence