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β-Globin cis-elements determine differential nuclear targeting through epigenetic modifications

Bian, Q., Khanna, N., Alvikas, J. & Belmont, A. S., Dec 9 2013, In : Journal of Cell Biology. 203, 5, p. 767-783 17 p.

Research output: Contribution to journalArticle

Bacterial Artificial Chromosomes
Globins
Heterochromatin
Epigenomics
Methylation

β-Catenin is required for the establishment of vegetal embryonic fates in the nemertean, Cerebratulus lacteus

Henry, J. Q., Perry, K. J., Wever, J., Seaver, E. & Martindale, M. Q., May 1 2008, In : Developmental Biology. 317, 1, p. 368-379 12 p.

Research output: Contribution to journalArticle

Catenins
Endoderm
Asymmetric Cell Division
Wnt Signaling Pathway
Cnidaria

β-catenin and early development in the Gastropod, Crepidula fornicata

Henry, J. J., Perry, K. J. & Martindale, M. Q., Nov 1 2010, In : Integrative and Comparative Biology. 50, 5, p. 707-719 13 p.

Research output: Contribution to journalArticle

early development
Gastropoda
embryo (animal)
cells
hindgut

α-Actinin-4/FSGS1 is required for Arp2/3-dependent actin assembly at the adherens junction

Tang, V. W. & Brieher, W. M., Jan 1 2012, In : Journal of Cell Biology. 196, 1, p. 115-130 16 p.

Research output: Contribution to journalArticle

Actinin
Adherens Junctions
Actins
Cadherins
Intercellular Junctions

α7β1 integrin regulation of gene transcription in skeletal muscle following an acute bout of eccentric exercise

Mahmassani, Z. S., Son, K., Pincu, Y., Munroe, M., Drnevich, J., Chen, J. & Boppart, M., May 11 2017, In : American Journal of Physiology - Cell Physiology. 312, 5, p. 638-650 13 p.

Research output: Contribution to journalArticle

Integrins
Skeletal Muscle
Genes
Muscles
Costameres

α4 Associates with protein phosphatases 2A, 4, and 6

Chen, J., Peterson, R. T. & Schreiber, S. L., Jun 29 1998, In : Biochemical and Biophysical Research Communications. 247, 3, p. 827-832 6 p.

Research output: Contribution to journalArticle

Protein Phosphatase 2
Phosphoric Monoester Hydrolases
Phosphorylation
Phosphoprotein Phosphatases
Sirolimus

ZSCAN5B and primate-specific paralogs bind RNA polymerase III genes and extra-TFIIIC (ETC) sites to modulate mitotic progression

Sun, Y., Zhang, H., Kazemian, M., Troy, J. M., Seward, C., Lu, X. & Stubbs, L., Jan 1 2016, In : Oncotarget. 7, 45, p. 72571-72592 22 p.

Research output: Contribution to journalArticle

RNA Polymerase III
Primates
Transfer RNA
Genes
Cell Cycle

zPicture: Dynamic alignment and visualization tool for analyzing conservation profiles

Ovcharenko, I., Loots, G. G., Hardison, R. C., Miller, W. & Stubbs, L., Mar 1 2004, In : Genome Research. 14, 3, p. 472-477 6 p.

Research output: Contribution to journalArticle

Binding Sites
Genome
Molecular Sequence Annotation
Sequence Alignment
Sequence Analysis

Zim1, a maternally expressed mouse Kruppel-type zinc-finger gene located in proximal chromosome 7

Kim, J., Lu, X. & Stubbs, L., Jan 1 1999, In : Human molecular genetics. 8, 5, p. 847-854 8 p.

Research output: Contribution to journalArticle

Chromosomes, Human, Pair 7
Zinc Fingers
Genes
Human Chromosomes
Alleles

XPLN is an endogenous inhibitor of mTORC2

Khanna, N., Fang, Y., Yoon, M. S. & Chen, J., Oct 1 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 40, p. 15979-15984 6 p.

Research output: Contribution to journalArticle

Guanine Nucleotide Exchange Factors
Phosphotransferases
TOR complex 2
rho GTP-Binding Proteins
Muscle Proteins

Xenopus laevis gelatinase B (Xmmp-9): Development, regeneration, and wound healing

Carinato, M. E., Walter, B. E. & Henry, J. J., Apr 14 2000, In : Developmental Dynamics. 217, 4, p. 377-387 11 p.

Research output: Contribution to journalArticle

Matrix Metalloproteinase 9
Xenopus laevis
Wound Healing
Lenses
Regeneration

Williams Syndrome Transcription Factor is critical for neural crest cell function in Xenopus laevis

Barnett, C., Yazgan, O., Kuo, H. C., Malakar, S., Thomas, T., Fitzgerald, A., Harbour, W., Henry, J. J. & Krebs, J. E., Sep 1 2012, In : Mechanisms of Development. 129, 9-12, p. 324-338 15 p.

Research output: Contribution to journalArticle

Williams Syndrome
Neural Crest
Xenopus laevis
Transcription Factors
Embryonic Structures

Why kinesin is so processive

Toprak, E., Yildiz, A., Hoffman, M. T., Rosenfeld, S. S. & Selvin, P. R., Aug 4 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 31, p. 12717-12722 6 p.

Research output: Contribution to journalArticle

Kinesin
Microtubules
Adenosine Triphosphate
Head
Fluorescence

VITAL NMR: Using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy

Brothers, M. C., Nesbitt, A. E., Hallock, M. J., Rupasinghe, S. G., Tang, M., Harris, J., Baudry, J., Schuler, M. A. & Rienstra, C. M., Jan 1 2012, In : Journal of Biomolecular NMR. 52, 1, p. 41-56 16 p.

Research output: Contribution to journalArticle

Chemical shift
Nuclear magnetic resonance
Amino Acids
Proteins
Labeling

Visualization of large-scale chromatin structure and dynamics using the lac operator/lac repressor reporter system

Belmont, A. S., Li, G., Sudlow, G. & Robinett, C., Dec 1 1999, In : Methods in Cell Biology. 58, p. 203-222 20 p.

Research output: Contribution to journalArticle

Luminescent Proteins
Lac Repressors
Repressor Proteins
Phototoxic Dermatitis
Nuclear Localization Signals

Visualization of gene activity in living cells

Tsukamoto, T., Hashiguchi, N., Janicki, S. M., Tumbar, T., Belmont, A. S. & Spector, D. L., Dec 18 2000, In : Nature Cell Biology. 2, 12, p. 871-878 8 p.

Research output: Contribution to journalArticle

Lac Repressors
Gene Expression
Chromatin
Genes
Peroxisomes

Visualization of G1 chromosomes: A folded, twisted, supercoiled chromonema model of interphase chromatid structure

Belmont, A. S. & Bruce, K., Oct 1 1994, In : Journal of Cell Biology. 127, 2, p. 287-302 16 p.

Research output: Contribution to journalArticle

Chromosomes, Human, 1-3
Chromosome Structures
Chromatids
Interphase
Chromatin

Visualization of early chromosome condensation: A hierarchical folding, axial glue model of chromosome structure

Kireeva, N., Lakonishok, M., Kireev, I., Hirano, T. & Belmont, A. S., Sep 13 2004, In : Journal of Cell Biology. 166, 6, p. 775-785 11 p.

Research output: Contribution to journalArticle

Chromosome Structures
Prophase
Adhesives
Chromosomes
Chromosomes, Human, Pair 2

Variations in CYP74B2 (Hydroperoxide Lyase) gene expression differentially affect hexenal signaling in the Columbia and Landsberg erecta ecotypes of arabidopsis

Duan, H., Huang, M. Y., Palacio, K. & Schuler, M. A., Dec 1 2005, In : Plant physiology. 139, 3, p. 1529-1544 16 p.

Research output: Contribution to journalArticle

Ecotype
Hexobarbital
lyases
hydroperoxides
ecotypes

Using fixed fiduciary markers for stage drift correction

Lee, S. H., Baday, M., Tjioe, M., Simonson, P. D., Zhang, R., Cai, E. & Selvin, P. R., May 21 2012, In : Optics Express. 20, 11, p. 12177-12183 7 p.

Research output: Contribution to journalArticle

fiduciaries
markers
fluorescence
walking
clocks

U-rich tracts enhance 3′ splice site recognition in plant nuclei

Baynton, C. E., Potthoff, S. J., McCullough, A. J. & Schuler, M. A., Oct 1 1996, In : Plant Journal. 10, 4, p. 703-711 9 p.

Research output: Contribution to journalArticle

RNA Splice Sites
uridine
Uridine
introns
Introns

Upstream binding factor association induces large-scale chromatin decondensation

Chen, D., Belmont, A. S. & Huang, S., Oct 19 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 42, p. 15106-15111 6 p.

Research output: Contribution to journalArticle

Chromatin
Chromatin Assembly and Disassembly
Ribosomal DNA
Lac Repressors
Spatio-Temporal Analysis

Understanding cornea homeostasis and wound healing using a novel model of stem cell deficiency in Xenopus

Adil, M. T., Simons, C. M., Sonam, S. & Henry, J. J., Oct 2019, In : Experimental Eye Research. 187, 107767.

Research output: Contribution to journalArticle

Xenopus
Wound Healing
Cornea
Homeostasis
Stem Cells

Two-photon 3D fiona of individual quantum dots in an aqueous environment

Zhang, R., Rothenberg, E., Fruhwirth, G., Simonson, P. D., Ye, F., Golding, I., Ng, T., Lopes, W. & Selvin, P. R., Oct 12 2011, In : Nano letters. 11, 10, p. 4074-4078 5 p.

Research output: Contribution to journalArticle

Semiconductor quantum dots
Photons
quantum dots
Microscopic examination
photons

Truncated HP1 lacking a functional chromodomain induces heterochromatinization upon in vivo targeting

Brink, M. C., Van Der Velden, Y., De Leeuw, W., Mateos-Langerak, J., Belmont, A. S., Van Driel, R. & Verschure, P. J., Jan 1 2006, In : Histochemistry and Cell Biology. 125, 1-2, p. 53-61 9 p.

Research output: Contribution to journalArticle

Lac Repressors
Chromatin
heterochromatin-specific nonhistone chromosomal protein HP-1
Histones
Chromosomes

Trithorax regulates systemic signaling during drosophila imaginal disc regeneration

Skinner, A., Khan, S. J. & Smith-Bolton, R. K., Oct 15 2015, In : Development (Cambridge). 142, 20, p. 3500-3511 12 p.

Research output: Contribution to journalArticle

Imaginal Discs
Drosophila
Regeneration
regeneration
animal

Transcription upregulation via force-induced direct stretching of chromatin

Tajik, A., Zhang, Y., Wei, F., Sun, J., Jia, Q., Zhou, W., Singh, R., Khanna, N., Belmont, A. S. & Wang, N., Dec 1 2016, In : Nature Materials. 15, 12, p. 1287-1296 10 p.

Research output: Contribution to journalArticle

chromatin
Transcription
Tetrahydrofolate Dehydrogenase
Stretching
Chromatin
Ecdysterone
Methoxsalen
ecdysterone
5' Untranslated Regions
5' untranslated regions

Transcriptional response elements in the promoter of CYP6B1, an insect P450 gene regulated by plant chemicals

Petersen, R. A., Niamsup, H., Berenbaum, M. R. & Schuler, M. A., Feb 17 2003, In : Biochimica et Biophysica Acta - General Subjects. 1619, 3, p. 269-282 14 p.

Research output: Contribution to journalArticle

Insect Genes
Methoxsalen
Chemical plants
Response Elements
Transcription

Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice

Saul, M. C., Seward, C. H., Troy, J. M., Zhang, H., Sloofman, L. G., Lu, X., Weisner, P. A., Caetano-Anolles, D., Sun, H., Zhao, S. D., Chandrasekaran, S., Sinha, S. & Stubbs, L., Jun 2017, In : Genome Research. 27, 6, p. 959-972 14 p.

Research output: Contribution to journalArticle

Chromatin
Frontal Lobe
Amygdala
Energy Metabolism
Hypothalamus

Transcriptional regulation of the Papilio polyxenes CYP6B1 gene

Prapaipong, H., Berenbaum, M. R. & Schuler, M. A., Aug 11 1994, In : Nucleic acids research. 22, 15, p. 3210-3217 8 p.

Research output: Contribution to journalArticle

Methoxsalen
Genes
Transcription Initiation Site
Ribonucleases
Isoenzymes

Tracking melanosomes inside a cell to study molecular motors and their interaction

Kural, C., Serpinskaya, A. S., Chou, Y. H., Goldman, R. D., Gelfand, V. I. & Selvin, P. R., Mar 27 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 13, p. 5378-5382 5 p.

Research output: Contribution to journalArticle

Melanosomes
Myosin Type V
Melanophores
Intermediate Filaments
Kinesin

Toxicity of aflatoxin B1 to Helicoverpa zea and bioactivation by cytochrome P450 monooxygenases

Zeng, R. S. L., Niu, G., Wen, Z., Schuler, M. A. & Berenbaum, M. R., Dec 1 2006, In : Journal of Chemical Ecology. 32, 7, p. 1459-1471 13 p.

Research output: Contribution to journalArticle

Aflatoxin B1
Helicoverpa zea
aflatoxin B1
Mixed Function Oxygenases
cytochrome P-450

Toward intelligent synthetic neural circuits: Directing and accelerating neuron cell growth by self-rolled-up silicon nitride microtube array

Froeter, P., Huang, Y., Cangellaris, O. V., Huang, W., Dent, E. W., Gillette, M. U., Williams, J. C. & Li, X., Nov 25 2014, In : ACS Nano. 8, 11, p. 11108-11117 10 p.

Research output: Contribution to journalArticle

Cell growth
Silicon nitride
neurons
silicon nitrides
Neurons

Torsional rigidity of positively and negatively supercoiled DNA

Selvin, P. R., Cook, D. N., Pon, N. G., Bauer, W. R., Klein, M. P. & Hearst, J. E., Jan 1 1992, In : Science. 255, 5040, p. 82-85 4 p.

Research output: Contribution to journalArticle

Superhelical DNA
Ethidium
Photons
Carrier Proteins
Temperature

Topography and refractometry of nanostructures using spatial light interference microscopy

Wang, Z., Chun, I. S., Li, X., Ong, Z. Y., Pop, E., Millet, L., Gillette, M. & Popescu, G., Jan 15 2010, In : Optics Letters. 35, 2, p. 208-210 3 p.

Research output: Contribution to journalArticle

topography
microscopy
interference
neurons
decoupling

Tissue-specific expression and post-translational modification of histone H3 variants

Garcia, B. A., Thomas, C. E., Kelleher, N. L. & Mizzen, C. A., Oct 1 2008, In : Journal of Proteome Research. 7, 10, p. 4225-4236 12 p.

Research output: Contribution to journalArticle

Post Translational Protein Processing
Histones
Tissue
Pulse time modulation
Liver

Three-dimensional particle tracking via bifocal imaging

Toprak, E., Balci, H., Blehm, B. H. & Selvin, P. R., Jul 1 2007, In : Nano letters. 7, 7, p. 2043-2045 3 p.

Research output: Contribution to journalArticle

Imaging techniques
CCD cameras
beads
Molecules
molecules
Biological Models
Interphase
Cell Nucleus
HeLa Cells
DNA

Thiol-reactive luminescent lanthanide chelates: Part 2

Ge, P. & Selvin, P. R., Sep 1 2003, In : Bioconjugate Chemistry. 14, 5, p. 870-876 7 p.

Research output: Contribution to journalArticle

Iodoacetamide
Lanthanoid Series Elements
Rare earth elements
Sulfhydryl Compounds
ethylenediamine

Thiol-reactive luminescent chelates of terbium and europium

Chen, J. & Selvin, P. R., Mar 1 1999, In : Bioconjugate Chemistry. 10, 2, p. 311-315 5 p.

Research output: Contribution to journalArticle

Terbium
Europium
Amides
Sulfhydryl Compounds
Ligation

The unique insert at the end of the myosin VI motor is the sole determinant of directionality

Park, H., Li, A., Chen, L. Q., Houdusse, A., Selvin, P. R. & Sweeney, H. L., Jan 16 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 3, p. 778-783 6 p.

Research output: Contribution to journalArticle

Myosins
Actin Cytoskeleton
Insects
Myosin Type V
myosin VI

The unique developmental program of the acoel flatworm, Neochildia fusca

Henry, J. Q., Martindale, M. Q. & Boyer, B. C., Apr 15 2000, In : Developmental Biology. 220, 2, p. 285-295 11 p.

Research output: Contribution to journalArticle

Platyhelminths
Embryonic Structures
Cell Lineage
Mesoderm
Cell Communication

The tripartite motif of nuclear factor 7 is required for its association with transcriptional units

Beenders, B., Jones, P. L. & Bellini, M., Apr 1 2007, In : Molecular and cellular biology. 27, 7, p. 2615-2624 10 p.

Research output: Contribution to journalArticle

Oocytes
RNA Precursors
RNA Polymerase II
Ion Exchange Chromatography
Glutaral

The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression

Ament, S. A., Wang, Y., Chen, C. C., Blatti, C. A., Hong, F., Liang, Z. S., Negre, N., White, K. P., Rodriguez-Zas, S. L., Mizzen, C. A., Sinha, S., Zhong, S. & Robinson, G. E., Mar 1 2012, In : PLoS genetics. 8, 3, e1002596.

Research output: Contribution to journalArticle

Fat Body
Honey
Social Behavior
Gene Regulatory Networks
Bees

The TAF(II)250 subunit of TFIID has histone acetyltransferase activity

Mizzen, C. A., Yang, X. J., Kokubo, T., Brownell, J. E., Bannister, A. J., Owen-Hughes, T., Workman, J., Wang, L., Berger, S. L., Kouzarides, T., Nakatani, Y. & Allis, C. D., Dec 27 1996, In : Cell. 87, 7, p. 1261-1270 10 p.

Research output: Contribution to journalArticle

Transcription Factor TFIID
Histone Acetyltransferases
Histones
TATA-Box Binding Protein
Transcription
Suprachiasmatic Nucleus
Brain
Photoperiod
Circadian Rhythm
Hypothalamus

The slipper snail, Crepidula: An emerging lophotrochozoan model system

Henry, J. J., Collin, R. & Perry, K. J., Jun 1 2010, In : Biological Bulletin. 218, 3, p. 211-229 19 p.

Research output: Contribution to journalArticle

Snails
snails
Developmental Biology
Mollusca
Expressed Sequence Tags

The role of sensory innervation in cornea-lens regeneration

Perry, K. J., Hamilton, P. W., Sonam, S., Singh, R. & Henry, J. J., Jul 2019, In : Developmental Dynamics. 248, 7, p. 530-544 15 p.

Research output: Contribution to journalArticle

Cornea
Lenses
Regeneration
Nerve Growth Factors
Substance P

The role of Sas2, an acetyltransferase homologue of Saccharomyces cerevisiae, in silencing and ORC function

Ehrenhofer-Murray, A. E., Rivier, D. H. & Rine, J., Apr 1 1997, In : Genetics. 145, 4, p. 923-934 12 p.

Research output: Contribution to journalArticle

Origin Recognition Complex
Acetyltransferases
Saccharomyces cerevisiae
Mutation
Consensus Sequence