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Histone H1 phosphorylation is associated with transcription by RNA polymerases I and II

Zheng, Y., John, S., Pesavento, J. J., Schultz-Norton, J. R., Schiltz, R. L., Baek, S., Nardulli, A. M., Hager, G. L., Kelleher, N. L. & Mizzen, C. A., May 3 2010, In : Journal of Cell Biology. 189, 3, p. 407-415 9 p.

Research output: Contribution to journalArticle

RNA Polymerase I
RNA Polymerase II
Interphase
Histones
Phosphorylation

Histone H4 deacetylation facilitates 53BP1 DNA damage signaling and double-strand break repair

Hsiao, K. Y. & Mizzen, C. A., Jun 1 2013, In : Journal of Molecular Cell Biology. 5, 3, p. 157-165 9 p.

Research output: Contribution to journalArticle

Histones
DNA Damage
Methyltransferases
Acetylation
Histone Deacetylase Inhibitors

Histone Modifications Depict an Aberrantly Heterochromatinized FMR1 Gene in Fragile X Syndrome

Coffee, B., Zhang, F., Ceman, S., Warren, S. T. & Reines, D., Jan 1 2002, In : American Journal of Human Genetics. 71, 4, p. 923-932 10 p.

Research output: Contribution to journalArticle

Histone Code
Fragile X Syndrome
Histones
Methylation
Lysine

Histones in transit: Cytosolic histone complexes and diacetylation of H4 during nucleosome assembly in human cells

Chang, L., Loranger, S. S., Mizzen, C., Ernst, S. G., Allis, C. D. & Annunziato, A. T., Jan 21 1997, In : Biochemistry. 36, 3, p. 469-480 12 p.

Research output: Contribution to journalArticle

Acetylation
Nucleosomes
Histone Acetyltransferases
Histones
Cells

HMR-I is an origin of replication and a silencer in Saccharomyces cerevisiae

Rivier, D. H., Ekena, J. L. & Rine, J., Feb 1999, In : Genetics. 151, 2, p. 521-529 9 p.

Research output: Contribution to journalArticle

Replication Origin
Saccharomyces cerevisiae
Plasmids
Myosin Type II
Myosin Subfragments
Energy Transfer
Myosins
Head

Homology of ciliary bands in Spiralian Trochophores

Henry, J. Q., Hejnol, A., Perry, K. J. & Martindale, M. Q., Dec 1 2007, In : Integrative and Comparative Biology. 47, 6, p. 865-871 7 p.

Research output: Contribution to journalArticle

larvae
phylogeny
Annelida
molluscs
locomotion

Honey bee neurogenomic responses to affiliative and agonistic social interactions

Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Corona, F., Cash-Ahmed, A. C., Seward, C. H., Chandrasekaran, S., Stubbs, L. J. & Robinson, G. E., Jan 2019, In : Genes, Brain and Behavior. 18, 1, e12509.

Research output: Contribution to journalArticle

Honey
Bees
Interpersonal Relations
Nursing
Mushroom Bodies
Honey
Bees
Immunity
Up-Regulation
Pollen

How myosin VI coordinates its heads during processive movement

Sweeney, H. L., Park, H., Zong, A. B., Yang, Z., Selvin, P. R. & Rosenfeld, S. S., Jun 6 2007, In : EMBO Journal. 26, 11, p. 2682-2692 11 p.

Research output: Contribution to journalArticle

Head
Adenosine Diphosphate
Actins
Myosin Type V
Kinesin

Hsp70 gene association with nuclear speckles is Hsp70 promoter specific

Hu, Y., Plutz, M. & Belmont, A. S., Nov 15 2010, In : Journal of Cell Biology. 191, 4, p. 711-719 9 p.

Research output: Contribution to journalArticle

HSP70 Heat-Shock Proteins
Transgenes
Genes
Small Heat-Shock Proteins
Bacterial Artificial Chromosomes

HSP70 transgene directed motion to nuclear speckles facilitates heat shock activation

Khanna, N., Hu, Y. & Belmont, A. S., May 19 2014, In : Current Biology. 24, 10, p. 1138-1144 7 p.

Research output: Contribution to journalArticle

Speckle
Transgenes
transgenes
heat stress
Shock

Hsp90 and p23 Molecular Chaperones Control Chromatin Architecture by Maintaining the Functional Pool of the RSC Chromatin Remodeler

Echtenkamp, F. J., Gvozdenov, Z., Adkins, N. L., Zhang, Y., Lynch-Day, M., Watanabe, S., Peterson, C. L. & Freeman, B. C., Dec 1 2016, In : Molecular cell. 64, 5, p. 888-899 12 p.

Research output: Contribution to journalArticle

Molecular Chaperones
Nucleosomes
Chromatin
Life Cycle Stages
Proteolysis
Origin Recognition Complex
Heterochromatin
Protein Binding
Chromatin
Proteins

Identification and characterization of a seven transmembrane hormone receptor using differential display

Lin, H. H., Stubbs, L. J. & Mucenski, M. L., May 1 1997, In : Genomics. 41, 3, p. 301-308 8 p.

Research output: Contribution to journalArticle

Hormones
Epidermal Growth Factor
Genes
Hematopoiesis
Complementary DNA

Identification and characterization of the methyl arginines in the fragile X mental retardation protein Fmrp

Stetler, A., Winograd, C., Sayegh, J., Cheever, A., Patton, E., Zhang, X., Clarke, S. & Ceman, S., Jan 1 2006, In : Human molecular genetics. 15, 1, p. 87-96 10 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Arginine
Methylation
RNA
Glycine

Identification and characterization of topoisomerase II inhibitory peptides from soy protein hydrolysates

Wang, W., Rupasinghe, S. G., Schuler, M. A. & De Mejia, E. G., Aug 13 2008, In : Journal of Agricultural and Food Chemistry. 56, 15, p. 6267-6277 11 p.

Research output: Contribution to journalArticle

Protein Hydrolysates
DNA topoisomerase (ATP-hydrolysing)
Type II DNA Topoisomerase
Soybean Proteins
peptides

Identification and mutation of phosphorylation sites in a linker histone. Phosphorylation of macronuclear H1 is not essential for viability in Tetrahymena

Mizzen, C. A., Dou, Y., Liu, Y., Cook, R. G., Gorovsky, M. A. & Allist, C. D., May 21 1999, In : Journal of Biological Chemistry. 274, 21, p. 14533-14536 4 p.

Research output: Contribution to journalArticle

Tetrahymena
Phosphorylation
Histones
Mutation
Macronucleus

Identification of a compound origin of replication at the HMR-E locus in Saccharomyces cerevisiae

Hurst, S. T. & Rivier, D. H., Feb 12 1999, In : Journal of Biological Chemistry. 274, 7, p. 4155-4159 5 p.

Research output: Contribution to journalArticle

Replication Origin
Yeast
Saccharomyces cerevisiae
Yeasts
Viverridae

Identification of a novel nuclear factor-binding site in the Pisum sativum sad gene promoters

Gittins, J. R., Schuler, M. A. & Strid, Å., Apr 12 2002, In : Biochimica et Biophysica Acta - Gene Structure and Expression. 1574, 3, p. 231-244 14 p.

Research output: Contribution to journalArticle

Peas
Genes
Binding Sites
Transcription
DNA

Identification of key regulatory pathways of myeloid differentiation using an mESC-based karyotypically normal cell model

Li, D., Yang, H., Nan, H., Liu, P., Pang, S., Zhao, Q., Karni, R., Kamps, M. P., Xu, Y., Zhou, J., Wiedmer, T., Sims, P. J. & Wang, F., Dec 6 2012, In : Blood. 120, 24, p. 4712-4719 8 p.

Research output: Contribution to journalArticle

Embryonic Stem Cells
Stem cells
Karyotyping
Estrogens
Neutrophils

Identification of SAS4 and SAS5, two genes that regulate silencing in Saccharomyces cerevisiae

Xu, E. Y., Kim, S., Replogle, K., Rine, J. & Rivier, D. H., Sep 1 1999, In : Genetics. 153, 1, p. 13-23 11 p.

Research output: Contribution to journalArticle

Gene Silencing
Saccharomyces cerevisiae
Genes
Binding Sites
Acute Myeloid Leukemia

Identification of variable amino acids in the SRS1 region of CYP6B1 modulating furanocoumarin metabolism

Pan, L., Wen, Z., Baudry, J., Berenbaum, M. R. & Schuler, M. A., Feb 1 2004, In : Archives of Biochemistry and Biophysics. 422, 1, p. 31-41 11 p.

Research output: Contribution to journalArticle

Heme
Metabolism
Amino Acids
Insects
Hydrogen

IGF-II is regulated by microRNA-125b in skeletal myogenesis

Ge, Y., Sun, Y. & Chen, J., Jan 10 2011, In : Journal of Cell Biology. 192, 1, p. 69-81 13 p.

Research output: Contribution to journalArticle

Insulin-Like Growth Factor II
Muscle Development
MicroRNAs
Sirolimus
Muscles

IGF-II transcription in skeletal myogenesis is controlled by mTOR and nutrients

Erbay, E., Park, I. H., Nuzzi, P. D., Schoenherr, C. J. & Chen, J., Dec 8 2003, In : Journal of Cell Biology. 163, 5, p. 931-936 6 p.

Research output: Contribution to journalArticle

Insulin-Like Growth Factor II
Muscle Development
Somatomedins
Food
Myoblasts
Cytochrome P-450 Enzyme System
Insects
Heme
NADP
Oxidoreductases

Immortalized suprachiasmatic nucleus cells express components of multiple circadian regulatory pathways

Hurst, W. J., Gillette, M. U., Earnest, D., Gillette, M. U. & Gillette, M. U., Jan 1 2002, In : Biochemical and Biophysical Research Communications. 292, 1, p. 20-30 11 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Cellular Structures
Clocks
Genes
Cells

Immune system-mediated atherosclerosis caused by deficiency of long non-coding RNA MALAT1 in ApoE-/- mice

Gast, M., Rauch, B. H., Nakagawa, S., Haghikia, A., Jasina, A., Haas, J., Nath, N., Jensen, L., Stroux, A., Böhm, A., Friebel, J., Rauch, U., Skurk, C., Blankenberg, S., Zeller, T., Kannanganattu, P. K., Meder, B., Kuss, A., Landmesser, U. & Poller, W., Feb 1 2019, In : Cardiovascular research. 115, 2, p. 302-314 13 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
Apolipoproteins E
Immune System
Atherosclerosis
Neoplasm Metastasis
Papilio polyxenes
Methoxsalen
Mixed Function Oxygenases
cytochrome P-450
Cytochrome P-450 Enzyme System

Imprinting and evolution of two Kruppel-type zinc-finger genes, ZIM3 and ZNF264, located in the PEG3/USP29 imprinted domain

Kim, J., Bergmann, A., Wehri, E., Lu, X. & Stubbs, L., Aug 1 2001, In : Genomics. 77, 1-2, p. 91-98 8 p.

Research output: Contribution to journalArticle

Zinc Fingers
Genes
Testis
Proteins
Open Reading Frames

Improved hidden Markov models for molecular motors, part 1: Basic theory

Müllner, F. E., Syed, S., Selvin, P. R. & Sigworth, F. J., Dec 1 2010, In : Biophysical journal. 99, 11, p. 3684-3695 12 p.

Research output: Contribution to journalArticle

Molecular Models
Chemical Models
Ion Channels

Improved hidden Markov models for molecular motors, part 2: Extensions and application to experimental data

Syed, S., Müllner, F. E., Selvin, P. R. & Sigworth, F. J., Dec 1 2010, In : Biophysical journal. 99, 11, p. 3696-3703 8 p.

Research output: Contribution to journalArticle

Molecular Models
Myosin Type V
Melanosomes
Noise
Population

Induction of a secondary body axis in Xenopus by antibodies to β-catenin

McCrea, P. D., Brieher, W. M. & Gumbiner, B. M., Oct 1993, In : Journal of Cell Biology. 123, 2, p. 477-484 8 p.

Research output: Contribution to journalArticle

Catenins
Xenopus
Cadherins
Antibodies
Embryonic Structures

Induction of cytochrome P450-mediated detoxification of xanthotoxin in the black swallowtail

Cohen, M. B., Berenbaum, M. R. & Schuler, M. A., Sep 1 1989, In : Journal of Chemical Ecology. 15, 9, p. 2347-2355 9 p.

Research output: Contribution to journalArticle

Papilio polyxenes
methoxsalen
Methoxsalen
Detoxification
detoxification

Inductive interactions and embryonic equivalence groups in a basal metazoan, the ctenophore Mnemiopsis leidyi

Henry, J. Q. & Martindale, M. Q., Jan 1 2004, In : Evolution and Development. 6, 1, p. 17-24 8 p.

Research output: Contribution to journalArticle

Ctenophora
Mnemiopsis leidyi
metazoan
locomotion
cleavage

Inductive interactions in the spatial and temporal restriction of lens-forming potential in embryonic ectoderm of Xenopus laevis

Henry, J. J. & Grainger, R. M., Nov 1987, In : Developmental Biology. 124, 1, p. 200-214 15 p.

Research output: Contribution to journalArticle

Ectoderm
Xenopus laevis
Lenses
Gastrulation
Neurulation

Inductive processes leading to inner ear formation during Xenopus development

Gallagher, B. C., Henry, J. J. & Grainger, R. M., Apr 10 1996, In : Developmental Biology. 175, 1, p. 95-107 13 p.

Research output: Contribution to journalArticle

Inner Ear
Xenopus
Ear
Neural Plate
Ectoderm
Papilio polyxenes
methoxsalen
Methoxsalen
psoralens
Detoxification

Inhibitory cell-cell interactions control development in the embryos of Cerebratulus lacteus.

Henry, J. J. & Martindale, M. Q., Oct 1994, In : The Biological bulletin. 187, 2, p. 238-239 2 p.

Research output: Contribution to journalArticle

Polychaeta
Blastomeres
development control
cell communication
blastomeres

Ins and outs of spiralian gastrulation

Lyons, D. C. & Henry, J. Q., Jan 1 2014, In : International Journal of Developmental Biology. 58, 6-8, p. 413-428 16 p.

Research output: Contribution to journalArticle

Gastrulation
Cell Lineage
Morphogenesis
Embryonic Structures
Platyhelminths

Insights into interphase large-scale chromatin structure from analysis of engineered chromosome regions

Belmont, A. S., Hu, Y., Sinclair, P. B., Wu, W., Bian, Q. & Kireev, I., Dec 1 2010, In : Cold Spring Harbor symposia on quantitative biology. 75, p. 453-460 8 p.

Research output: Contribution to journalArticle

Interphase
Chromosomes
Chromatin
Fibers
B-Form DNA

Insights into social insects from the genome of the honeybee Apis mellifera

Weinstock, G. M., Robinson, G. E., Gibbs, R. A., Worley, K. C., Evans, J. D., Maleszka, R., Robertson, H. M., Weaver, D. B., Beye, M., Bork, P., Elsik, C. G., Hartfelder, K., Hunt, G. J., Zdobnov, E. M., Amdam, G. V., Bitondi, M. M. G., Collins, A. M., Cristino, A. S., Lattorff, H. M. G., Lobo, C. H. & 204 others, Moritz, R. F. A., Nunes, F. M. F., Page, R. E., Simões, Z. L. P., Wheeler, D., Carninci, P., Fukuda, S., Hayashizaki, Y., Kai, C., Kawai, J., Sakazume, N., Sasaki, D., Tagami, M., Albert, S., Baggerman, G., Beggs, K. T., Bloch, G., Cazzamali, G., Cohen, M., Drapeau, M. D., Eisenhardt, D., Emore, C., Ewing, M. A., Fahrbach, S. E., Forêt, S., Grimmelikhuijzen, C. J. P., Hauser, F., Hummon, A. B., Huybrechts, J., Jones, A. K., Kadowaki, T., Kaplan, N., Kucharski, R., Leboulle, G., Linial, M., Littleton, J. T., Mercer, A. R., Richmond, T. A., Rodriguez-Zas, S. L., Rubin, E. B., Sattelle, D. B., Schlipalius, D., Schoofs, L., Shemesh, Y., Sweedler, J. V., Velarde, R., Verleyen, P., Vierstraete, E., Williamson, M. R., Ament, S. A., Brown, S. J., Corona, M., Dearden, P. K., Dunn, W. A., Elekonich, M. M., Fujiyuki, T., Gattermeier, I., Gempe, T., Hasselmann, M., Kage, E., Kamikouchi, A., Kubo, T., Kunieda, T., Lorenzen, M., Milshina, N. V., Morioka, M., Ohashi, K., Overbeek, R., Ross, C. A., Schioett, M., Shippy, T., Takeuchi, H., Toth, A. L., Willis, J. H., Wilson, M. J., Gordon, K. H. J., Letunic, I., Hackett, K., Peterson, J., Felsenfeld, A., Guyer, M., Solignac, M., Agarwala, R., Cornuet, J. M., Monnerot, M., Mougel, F., Reese, J. T., Vautrin, D., Gillespie, J. J., Cannone, J. J., Gutell, R. R., Johnston, J. S., Eisen, M. B., Iyer, V. N., Iyer, V., Kosarev, P., Mackey, A. J., Solovyev, V., Souvorov, A., Aronstein, K. A., Bilikova, K., Chen, Y. P., Clark, A. G., Decanini, L. I., Gelbart, W. M., Hetru, C., Hultmark, D., Imler, J. L., Jiang, H., Kanost, M., Kimura, K., Lazzaro, B. P., Lopez, D. L., Simuth, J., Thompson, G. J., Zou, Z., De Jong, P., Sodergren, E., Csurös, M., Milosavljevic, A., Osoegawa, K., Richards, S., Shu, C. L., Duret, L., Elhaik, E., Graur, D., Anzola, J. M., Campbell, K. S., Childs, K. L., Collinge, D., Crosby, M. A., Dickens, C. M., Grametes, L. S., Grozinger, C. M., Jones, P. L., Jorda, M., Ling, X., Matthews, B. B., Miller, J., Mizzen, C., Peinado, M. A., Reid, J. G., Russo, S. M., Schroeder, A. J., St. Pierre, S. E., Wang, Y., Zhou, P., Jiang, H., Kitts, P., Ruef, B., Venkatraman, A., Zhang, L., Aquino-Perez, G., Whitfield, C. W., Behura, S. K., Berlocher, S. H., Sheppard, W. S., Smith, D. R., Suarez, A. V., Tsutsui, N. D., Wei, X., Wheeler, D., Havlak, P., Li, B., Liu, Y., Jovilet, A., Lee, S., Nazareth, L. V., Pu, L. L., Thorn, R., Stolc, V., Newman, T., Samanta, M., Tongprasit, W. A., Claudianos, C., Berenbaum, M. R., Biswas, S., De Graaf, D. C., Feyereisen, R., Johnson, R. M., Oakeshott, J. G., Ranson, H., Schuler, M. A., Muzny, D., Chacko, J., Davis, C., Dinh, H., Gill, R., Hernandez, J., Hines, S., Hume, J., Jackson, L. R., Kovar, C., Lewis, L., Miner, G., Morgan, M., Nguyen, N., Okwuonu, G., Paul, H., Santibanez, J., Savery, G., Svatek, A., Villasana, D. & Wright, R., Oct 26 2006, In : Nature. 443, 7114, p. 931-949 19 p.

Research output: Contribution to journalArticle

Insect Genome
Bees
Genes
Odorant Receptors
Genome

Integrated biochemical and mechanical signals regulate multifaceted human embryonic stem cell functions

Li, D., Zhou, J., Wang, L., Shin, M. E., Su, P., Lei, X., Kuang, H., Guo, W., Yang, H., Cheng, L., Tanaka, T. S., Leckband, D. E., Reynolds, A. B., Duan, E. & Wang, F., Nov 1 2010, In : Journal of Cell Biology. 191, 3, p. 631-644 14 p.

Research output: Contribution to journalArticle

Cadherins
Nonmuscle Myosin Type IIA
Physiological Feedback
Intercellular Junctions
Survival

Integration of temporal and spatial patterning generates neural diversity

Erclik, T., Li, X., Courgeon, M., Bertet, C., Chen, Z., Baumert, R., Ng, J., Koo, C., Arain, U., Behnia, R., Del Valle Rodriguez, A., Senderowicz, L., Negre, N., White, K. P. & Desplan, C., Jan 19 2017, In : Nature. 541, 7637, p. 365-370 6 p.

Research output: Contribution to journalArticle

Neurons
Neuropil
Automatic Data Processing
Drosophila

Interactions across Exons Can Influence Splice Site Recognition in Plant Nuclei

McCullough, A. J., Baynton, C. E. & Schuler, M. A., Dec 1 1996, In : Plant Cell. 8, 12, p. 2295-2307 13 p.

Research output: Contribution to journalArticle

RNA Splice Sites
exons
introns
Exons
Introns

Interhead distance measurements in myosin VI via SHRImP support a simplified hand-over-hand model

Balci, H., Ha, T., Sweeney, H. L. & Selvin, P. R., Jul 2005, In : Biophysical journal. 89, 1, p. 413-417 5 p.

Research output: Contribution to journalArticle

Hand
Head
Cryoelectron Microscopy
Actomyosin
myosin VI

Internal AU-rich elements modulate activity of two competing 3' splice sites in plant nuclei

Merritt, H., McCullough, A. J. & Schuler, M. A., Jan 1 1997, In : Plant Journal. 12, 4, p. 937-943 7 p.

Research output: Contribution to journalArticle

AU Rich Elements
RNA Splice Sites
Introns
introns
uridine
Interphase
Cell Cycle
Staining and Labeling
Chromatids
DNA Replication

Interphase chromosomes undergo constrained diffusional motion in living cells

Marshall, W. F., Straight, A., Marko, J. F., Swedlow, J., Dernburg, A., Belmont, A., Murray, A. W., Agard, D. A. & Sedat, J. W., Dec 1 1997, In : Current Biology. 7, 12, p. 930-939 10 p.

Research output: Contribution to journalArticle

Interphase
Chromosomes
interphase
Chromatin
chromatin

Interphase H1 phosphorylation: Regulation and functions in chromatin

Liao, R. & Mizzen, C. A., Mar 1 2016, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1859, 3, p. 476-485 10 p.

Research output: Contribution to journalArticle

Phosphorylation
Interphase
Chromatin
Histones
Transcription