Research Output 1978 2020

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Papilio polyxenes
methoxsalen
Methoxsalen
Papilionidae
psoralens

Expression of fragile X mental retardation protein within the vocal control system of developing and adult male zebra finches

Winograd, C., Clayton, D. & Ceman, S., Nov 11 2008, In : Neuroscience. 157, 1, p. 132-142 11 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Finches
Equidae
Music
Learning

Expression of pluripotency factors in larval epithelia of the frog Xenopus: Evidence for the presence of cornea epithelial stem cells

Perry, K. J., Thomas, A. G. & Henry, J. J., Feb 15 2013, In : Developmental Biology. 374, 2, p. 281-294 14 p.

Research output: Contribution to journalArticle

Xenopus
Anura
Cornea
Stem Cells
Epithelium

Expression specificity of the mouse exonuclease 1 (mExo1) gene

Lee, B. I., Shannon, M., Stubbs, L. & Wilson, D. M., Oct 15 1999, In : Nucleic acids research. 27, 20, p. 4114-4120 7 p.

Research output: Contribution to journalArticle

Genetic Recombination
Chromosomes
Genes
Testis
Yeasts

Extent of Voltage Sensor Movement during Gating of Shaker K+ Channels

Posson, D. J. & Selvin, P. R., Jul 10 2008, In : Neuron. 59, 1, p. 98-109 12 p.

Research output: Contribution to journalArticle

Energy Transfer
Luminescence
Structural Models
Research

Extracting dwell time sequences from processive molecular motor data

Milescu, L. S., Yildiz, A., Selvin, P. R. & Sachs, F., Nov 2006, In : Biophysical journal. 91, 9, p. 3135-3150 16 p.

Research output: Contribution to journalArticle

Kinesin
Myosins
Dyneins
Proton-Translocating ATPases
DNA-Directed RNA Polymerases

Ex vivo eye tissue culture methods for xenopus

Henry, J. J., Perry, K. J. & Hamilton, P. W., Apr 2019, In : Cold Spring Harbor protocols. 2019, 4, p. 274-278 5 p.

Research output: Contribution to journalArticle

Tissue culture
Xenopus
Lenses
Tissue
Regeneration

Facioscapulohumeral muscular dystrophy region gene-1 (FRG-1) is an actin-bundling protein associated with muscle-attachment sites

Liu, Q., Jones, T. I., Tang, V. W., Brieher, W. M. & Jones, P. L., Apr 1 2010, In : Journal of cell science. 123, 7, p. 1116-1123 8 p.

Research output: Contribution to journalArticle

Facioscapulohumeral Muscular Dystrophy
Actins
Muscles
Genes
Proteins

Facioscapulohumeral muscular dystrophy region gene 1 Is a dynamic RNA-associated and actin-bundling protein

Sun, C. Y. J., Van Koningsbruggen, S., Long, S. W., Straasheijm, K., Klooster, R., Jones, T. I., Bellini, M., Levesque, L., Brieher, W. M., Van Der Maarel, S. M. & Jones, P. L., Aug 12 2011, In : Journal of Molecular Biology. 411, 2, p. 397-416 20 p.

Research output: Contribution to journalArticle

Facioscapulohumeral Muscular Dystrophy
Actins
RNA
Genes
Proteins

Factors affecting authentic 5′ splice site selection in plant nuclei

McCullough, A. J., Lou, H. & Schuler, M. A., Mar 1993, In : Molecular and cellular biology. 13, 3, p. 1323-1331 9 p.

Research output: Contribution to journalArticle

RNA Splice Sites
Introns
Exons
Mutation
RNA Precursors

FGF signaling is required for lens regeneration in Xenopus Laevis

Fukui, L. & Henry, J. J., Jan 1 2011, In : Biological Bulletin. 221, 1, p. 137-145 9 p.

Research output: Contribution to journalArticle

Xenopus laevis
Lens
Lenses
Regeneration
Fibroblast Growth Factor Receptors

FIONA on Caenorhabditis elegans

Kural, C., Nonet, M. L. & Selvin, P. R., Jun 9 2009, In : Biochemistry. 48, 22, p. 4663-4665 3 p.

Research output: Contribution to journalArticle

Optical Imaging
Caenorhabditis elegans
Fluorescence
Imaging techniques
Fluorescent Dyes

Flt3L is a novel regulator of skeletal myogenesis

Ge, Y., Waldemer, R. J., Nalluri, R., Nuzzi, P. D. & Chen, J., Sep 9 2013, In : Journal of cell science. 126, 15, p. 3370-3379 10 p.

Research output: Contribution to journalArticle

Muscle Development
Phosphotransferases
Ligands
Myoblasts
p120 GTPase Activating Protein

Fluorescence imaging with one nanometer accuracy: Application to molecular motors

Yildiz, A. & Selvin, P. R., Jul 1 2005, In : Accounts of chemical research. 38, 7, p. 574-582 9 p.

Research output: Contribution to journalArticle

Myosin Type V
Fluorescence
Imaging techniques
Kinesin
Fluorophores

Fluorescence imaging with one-nanometer accuracy (fiona)

Wang, Y., Cai, E., Sheung, J., Lee, S. H., Teng, K. W. & Selvin, P. R., Sep 26 2014, In : Journal of Visualized Experiments. 91, e51774.

Research output: Contribution to journalArticle

Optical Imaging
Fluorescence
Imaging techniques
Quantum Dots
Semiconductor quantum dots

Fluorescence resonance energy transfer

Selvin, P. R., Jan 1 1995, In : Methods in enzymology. 246, C, p. 300-334 35 p.

Research output: Contribution to journalArticle

Fluorescence Resonance Energy Transfer
Energy Transfer
Fluorescence
Energy transfer
Biochemistry

FMRP phosphorylation reveals an immediate-early signaling pathway triggered by group I mGluR and mediated by PP2A

Narayanan, U., Nalavadi, V., Nakamoto, M., Pallas, D. C., Ceman, S., Bassell, G. J. & Warren, S. T., Dec 26 2007, In : Journal of Neuroscience. 27, 52, p. 14349-14357 9 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Protein Phosphatase 2
Metabotropic Glutamate Receptors
Phosphorylation
TOR Serine-Threonine Kinases

Forkhead box protein O1 negatively regulates skeletal myocyte differentiation through degradation of mammalian target of rapamycin pathway components

Wu, A. L., Kim, J. H., Zhang, C., Unterman, T. G. & Chen, J., Mar 1 2008, In : Endocrinology. 149, 3, p. 1407-1414 8 p.

Research output: Contribution to journalArticle

Skeletal Muscle Fibers
Sirolimus
Insulin-Like Growth Factor II
Muscle Development
Phosphatidylinositol 3-Kinase

Formation of Salt Bridges Mediates Internal Dimerization of Myosin VI Medial Tail Domain

Kim, H. J., Hsin, J., Liu, Y., Selvin, P. R. & Schulten, K. J., Nov 10 2010, In : Structure. 18, 11, p. 1443-1449 7 p.

Research output: Contribution to journalArticle

Dimerization
Salts
Molecular Dynamics Simulation
Static Electricity
myosin VI

Fragile X Mental Retardation Protein FMRP binds mRNAs in the nucleus

Kim, M., Bellini, M. & Ceman, S., Jan 1 2009, In : Molecular and cellular biology. 29, 1, p. 214-228 15 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Messenger RNA
Simian virus 40
Cell Nucleus Active Transport
RNA-Binding Proteins

Fragile X protein family member FXR1P is regulated by microRNAs

Cheever, A., Blackwell, E. & Ceman, S., Aug 1 2010, In : RNA. 16, 8, p. 1530-1539 10 p.

Research output: Contribution to journalArticle

MicroRNAs
Proteins
3' Untranslated Regions
Seeds
Luciferases

FRAP-dependent serine phosphorylation of IRS-1 inhibits IRS-1 tyrosine phosphorylation

Hartman, M. E., Villela-Bach, M., Chen, J. & Freund, G. G., Jan 1 2001, In : Biochemical and Biophysical Research Communications. 280, 3, p. 776-781 6 p., 94214.

Research output: Contribution to journalArticle

TOR Serine-Threonine Kinases
Insulin Receptor Substrate Proteins
Phosphorylation
Serine
Tyrosine
Actin Capping Proteins
Adherens Junctions
Focal Segmental Glomerulosclerosis
Actins
Adhesives

Full-length myosin VI dimerizes and moves processively along actin filaments upon monomer clustering

Park, H., Ramamurthy, B., Travaglia, M., Safer, D., Chen, L. Q., Franzini-Armstrong, C., Selvin, P. R. & Sweeney, H. L., Feb 3 2006, In : Molecular cell. 21, 3, p. 331-336 6 p.

Research output: Contribution to journalArticle

Actin Cytoskeleton
Cluster Analysis
Dimerization
Hand
Kinesin

Functional and prognostic significance of long non-coding RNA MALAT1 as a metastasis driver in ER negative lymph node negative breast cancer

Jadaliha, M., Zong, X., Malakar, P., Ray, T., Singh, D. K., Freier, S. M., Jensen, T., Prasanth, S. G., Karni, R., Ray, P. S. & Prasanth, K. V., Jan 1 2016, In : Oncotarget. 7, 26, p. 40418-40436 19 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
Lymph Nodes
Breast Neoplasms
Neoplasm Metastasis
Triple Negative Breast Neoplasms

Functional CpG methylation system in a social insect

Wang, Y., Jorda, M., Jones, P. L., Maleszka, R., Ling, X., Robertson, H. M., Mizzen, C. A., Peinado, M. A. & Robinson, G. E., Oct 27 2006, In : Science. 314, 5799, p. 645-647 3 p.

Research output: Contribution to journalArticle

Honey
Bees
DNA Methylation
Methylation
Insects

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. L., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journalArticle

Circadian Clocks
Neuropeptides
Suprachiasmatic Nucleus
Clocks
Optics

Function and evolution of C2H2 zinc finger arrays

Stubbs, L. J., Sun, Y. & Caetano-Anolles, D., Jan 1 2011, In : Sub-Cellular Biochemistry. 52, p. 75-94 20 p.

Research output: Contribution to journalArticle

Zinc
Transcription Factors
Nucleotide Motifs
Proteins
DNA

Gain, loss and divergence in primate Zinc-Finger genes: A rich resource for evolution of gene regulatory differences between species

Nowick, K., Fields, C., Gernat, T., Caetano-Anolles, D., Kholina, N. & Stubbs, L., Jul 1 2011, In : PloS one. 6, 6, e21553.

Research output: Contribution to journalArticle

zinc finger motif
Zinc Fingers
Regulator Genes
regulator genes
Primates

Gene expression profiles of lens regeneration and development in Xenopus laevis

Malloch, E. L., Perry, K. J., Fukui, L., Johnson, V. R., Wever, J., Beck, C. W., King, M. W. & Henry, J. J., Sep 21 2009, In : Developmental Dynamics. 238, 9, p. 2340-2356 17 p.

Research output: Contribution to journalArticle

Xenopus laevis
Transcriptome
Lenses
Regeneration
Genes

Gene expression profiling reveals the heterogeneous transcriptional activity of Oct3/4 and its possible interaction with Gli2 in mouse embryonic stem cells

Li, Y., Drnevich, J., Akraiko, T., Band, M. R., Li, D., Wang, F., Matoba, R. & Tanaka, T. S., Nov 1 2013, In : Genomics. 102, 5-6, p. 456-467 12 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Puromycin
Pluripotent Stem Cells
Genes
Venus

Generation and characterization of heritable reciprocal translocations in mice

Stubbs, L., Carver, E. A., Cacheiro, N. L. A., Shelby, M. & Generoso, W., Dec 1997, In : Methods: A Companion to Methods in Enzymology. 13, 4, p. 397-408 12 p.

Research output: Contribution to journalArticle

Genes
Mutagenesis
Mutation
Inborn Genetic Diseases
Aneuploidy

Generation and characterization of novel antibodies highly selective for phosphorylated linked histone H1 in Tetrahymena and HeLa cells

Lu, M. J., Dadd, C. A., Mizzen, C. A., Perry, C. A., McLachlan, D. R., Annunziato, A. T. & Allis, C. D., Apr 1 1994, In : Chromosoma. 103, 2, p. 111-121 11 p.

Research output: Contribution to journalArticle

Tetrahymena
HeLa Cells
Histones
Antibodies
Mitosis

Generation of melanocytes from induced pluripotent stem cells

Yang, R., Jiang, M., Kumar, S. M., Xu, T., Wang, F., Xiang, L. & Xu, X., Dec 2011, In : Journal of Investigative Dermatology. 131, 12, p. 2458-2466 9 p.

Research output: Contribution to journalArticle

Induced Pluripotent Stem Cells
Melanocytes
Stem cells
Fibroblasts
Tail

Gene regulation by low level UV-B radiation: Identification by DNA array analysis

Brosché, M., Schuler, M. A., Kalbina, I., Connor, L. & Strid, Å., Sep 1 2002, In : Photochemical and Photobiological Sciences. 1, 9, p. 656-664 9 p.

Research output: Contribution to journalArticle

gene expression
Oligonucleotide Array Sequence Analysis
Gene expression
genes
deoxyribonucleic acid

Gene-specific characterization of human histone H2B by electron capture dissociation

Siuti, N., Roth, M. J., Mizzen, C. A., Kelleher, N. L. & Pesavento, J. J., Feb 1 2006, In : Journal of Proteome Research. 5, 2, p. 233-239 7 p.

Research output: Contribution to journalArticle

Histones
Genes
Cells
Electrons
Butyric Acid

Genetic testing and autism: Tutorial for communication sciences and disorders

DeThorne, L. S. & Ceman, S., Jul 1 2018, In : Journal of Communication Disorders. 74, p. 61-73 13 p.

Research output: Contribution to journalArticle

Communication Disorders
communication disorder
communication sciences
Genetic Testing
Autistic Disorder

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In : Genome biology. 14, 5, R41.

Research output: Contribution to journalArticle

Nelumbo
Nelumbo nucifera
Lotus
genome
Genome

Genomic organization and expressed sequences of the mouse extended h-2k region

Lai, F., Stubbs, L., Lehrach, H., Huang, Y., Yeom, Y. & Artzt, K., Sep 15 1994, In : Genomics. 23, 2, p. 338-343 6 p.

Research output: Contribution to journalArticle

Major Histocompatibility Complex
Lethal Genes
Genes
Restriction Mapping
Immune System

GFP tagging of budding yeast chromosomes reveals that protein-protein interactions can mediate sister chromatid cohesion

Straight, A. F., Belmont, A. S., Robinett, C. C. & Murray, A. W., Dec 1996, In : Current Biology. 6, 12, p. 1599-1608 10 p.

Research output: Contribution to journalArticle

Saccharomycetales
Chromatids
chromatids
protein-protein interactions
Chromosomes

Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction

Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In : Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.

Research output: Contribution to journalArticle

Ice Cover
Glaciers
Hydrogel
Microchannels
Hydrogels

Global assessment of combinatorial post-translational modification of core histones in yeast using contemporary mass spectrometry: LYS4 trimethylation correlates with degree of acetylation on the same H3 tail

Jiang, L., Smith, J. N., Anderson, S. L., Ma, P., Mizzen, C. A. & Kelleher, N. L., Sep 21 2007, In : Journal of Biological Chemistry. 282, 38, p. 27923-27934 12 p.

Research output: Contribution to journalArticle

Acetylation
Post Translational Protein Processing
Histones
Yeast
Mass spectrometry

Global Functional Map of the p23 Molecular Chaperone Reveals an Extensive Cellular Network

Echtenkamp, F. J., Zelin, E., Oxelmark, E., Woo, J. I., Andrews, B. J., Garabedian, M. & Freeman, B. C., Jul 22 2011, In : Molecular cell. 43, 2, p. 229-241 13 p.

Research output: Contribution to journalArticle

Molecular Chaperones
Yeasts
Validation Studies
Mutagens
Ribosomes

Glutathione-S-transferase μ and theta gene polymorphisms as new risk factors of atopic bronchial asthma

Wang, F., Herzmark, P., Weiner, O. D., Srinivasan, S., Servant, G. & Bourne, H. R., Jan 1 2002, In : Journal of Molecular Medicine. 80, 1, p. 39-43 5 p.

Research output: Contribution to journalArticle

Glutathione Transferase
Asthma
Genes
Phase I Metabolic Detoxication
isoleucylvaline

Glycerolipid signals alter mTOR complex 2 (mTORC2) to diminish insulin signaling

Zhang, C., Wendel, A. A., Keogh, M. R., Harris, T. E., Chen, J. & Coleman, R. A., Jan 31 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 5, p. 1667-1672 6 p.

Research output: Contribution to journalArticle

Acyltransferases
Phosphatidic Acids
Insulin
Hepatocytes
Diglycerides

Graphene oxide substrates with N-cadherin stimulates neuronal growth and intracellular transport

Qin, E. C., Kandel, M. E., Liamas, E., Shah, T. B., Kim, C., Kaufman, C. D., Zhang, Z. J., Popescu, G., Gillette, M. L., Leckband, D. E. & Kong, H. J., May 2019, In : Acta Biomaterialia. 90, p. 412-423 12 p.

Research output: Contribution to journalArticle

Graphite
Cadherins
Oxides
Graphene
Neurons

Gravity persistent signal 1 (GPS1) reveals novel cytochrome P450s involved in Gravitropism

Withers, J. C., Shipp, M. J., Rupasinghe, S. G., Sukumar, P., Schuler, M. A., Muday, G. K. & Wyatt, S. E., Jan 1 2013, In : American journal of botany. 100, 1, p. 183-193 11 p.

Research output: Contribution to journalArticle

Gravitropism
gravitropism
Gravitation
Cytochromes
cytochromes

Growth differentiation factor-15 encodes a novel microRNA 3189 that functions as a potent regulator of cell death

Jones, M. F., Ling Li, X., Subramanian, M., Shabalina, S. A., Hara, T., Zhu, Y., Huang, J., Yang, Y., Wakefield, L. M., Prasanth, K. V. & Lal, A., Oct 9 2015, In : Cell Death and Differentiation. 22, 10, p. 1641-1653 13 p.

Research output: Contribution to journalArticle

Growth Differentiation Factor 15
MicroRNAs
Primates
Cell Death
Apoptosis

Guiding neuron development with planar surface gradients of substrate cues deposited using microfluidic devices

Millet, L. J., Stewart, M. E., Nuzzo, R. G. & Gillette, M. U., 2010, In : Lab on a chip. 10, 12, p. 1525-1535 11 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
Neurons
Cues
Laminin

Helicobacter pylori Infection Modulates Host Cell Metabolism through VacA-Dependent Inhibition of mTORC1

Kim, I. J., Lee, J., Oh, S. J., Yoon, M. S., Jang, S. S., Holland, R. L., Reno, M. L., Hamad, M. N., Maeda, T., Chung, H. J., Chen, J. & Blanke, S. R., May 9 2018, In : Cell Host and Microbe. 23, 5, p. 583-593.e8

Research output: Contribution to journalArticle

Helicobacter Infections
Helicobacter pylori
Autophagy
Amino Acids
Mitochondria