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Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

Gordon, L., Yang, S., Tran-Gyamfi, M., Baggott, D., Christensen, M., Hamilton, A., Crooijmans, R., Groenen, M., Lucas, S., Ovcharenko, I. & Stubbs, L., Nov 1 2007, In : Genome Research. 17, 11, p. 1603-1613 11 p.

Research output: Contribution to journalArticle

Comparative analysis of weighted gene coexpression networks in human and mouse

Eidsaa, M., Stubbs, L. & Almaas, E., Nov 2017, In : PloS one. 12, 11, e0187611.

Research output: Contribution to journalArticle

Comparative genomics of rice and arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot

Nelson, D. R., Schuler, M. A., Paquette, S. M., Werck-Reichhart, D. & Bak, S., Jun 1 2004, In : Plant physiology. 135, 2, p. 756-772 17 p.

Research output: Contribution to journalArticle

Comparative molecular modeling of Anopheles gambiae CYP6Z1, a mosquito P450 capable of metabolizing DDT

Chiu, T. L., Wen, Z., Rupasinghe, S. G. & Schuler, M. A., Jul 1 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 26, p. 8855-8860 6 p.

Research output: Contribution to journalArticle

Comparative toxicity of mycotoxins to navel orangeworm (Amyelois transitella) and corn earworm (Helicoverpa zea)

Niu, G., Siegel, J., Schuler, M. A. & Berenbaum, M. R., Aug 14 2009, In : Journal of Chemical Ecology. 35, 8, p. 951-957 7 p.

Research output: Contribution to journalArticle

Comparing label-free quantitative peptidomics approaches to characterize diurnal variation of peptides in the rat suprachiasmatic nucleus

Southey, B. R., Lee, J. E., Zamdborg, L., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Jan 7 2014, In : Analytical chemistry. 86, 1, p. 443-452 10 p.

Research output: Contribution to journalArticle

Comparison of murine Supt4h and a nearly identical expressed, processed gene: Evidence of sequence conservation through gene conversion extending into the untranslated regions

Chiang, P. W., Zhang, R., Stubbs, L., Zhang, L., Zhu, L. & Kurnit, D. M., Nov 1 1998, In : Nucleic acids research. 26, 21, p. 4960-4964 5 p.

Research output: Contribution to journalArticle

Complexity in transcription control at the activation domain-Mediator interface

Balamotis, M. A., Pennella, M. A., Stevens, J. L., Wasylyk, B., Belmont, A. S. & Berk, A. J., May 5 2009, In : Science Signaling. 2, 69, p. ra20

Research output: Contribution to journalArticle

Comprehensive phosphoprotein analysis of linker histone H1 from tetrahymena thermophila

Garcia, B. A., Joshi, S., Thomas, C. E., Chitta, R. K., Diaz, R. L., Busby, S. A., Andrews, P. C., Ogorzalek Loo, R. R., Shabanowitz, J., Kelleher, N. L., Mizzen, C. A., Allis, C. D. & Hunt, D. F., Sep 1 2006, In : Molecular and Cellular Proteomics. 5, 9, p. 1593-1609 17 p.

Research output: Contribution to journalArticle

Concordance between isolated cleft palate in mice and alterations within a region including the gene encoding the β3 subunit of the type a γ-aminobutyric acid receptor

Culiat, C. T., Stubbs, L., Nicholls, R. D., Montgomery, C. S., Russell, L. B., Johnson, D. K. & Rinchik, E. M., Jun 1 1993, In : Proceedings of the National Academy of Sciences of the United States of America. 90, 11, p. 5105-5109 5 p.

Research output: Contribution to journalArticle

Conformation and fibrillogenesis of Alzheimer Aβ peptides with selected substitution of charged residues

Fraser, P. E., McLachlan, D. R., Surewicz, W. K., Mizzen, C. A., Snow, A. D., Nguyen, J. T. & Kirschner, D. A., Jan 1 1994, In : Journal of Molecular Biology. 244, 1, p. 64-73 10 p.

Research output: Contribution to journalArticle

Conservation and innovation in spiralian development

Henry, J. J. & Martindale, M. Q., May 15 1999, In : Hydrobiologia. 402, p. 255-265 11 p.

Research output: Contribution to journalArticle

Conservation of gene expression during embryonic lens formation and cornea-lens transdifferentiation in Xenopus laevis

Schaefer, J. J., Oliver, G. & Henry, J. J., Aug 19 1999, In : Developmental Dynamics. 215, 4, p. 308-318 11 p.

Research output: Contribution to journalArticle

Conservation of the spiralian developmental program: Cell lineage of the nemertean, Cerebratulus lacteus

Henry, J. J. & Martindale, M. Q., Sep 15 1998, In : Developmental Biology. 201, 2, p. 253-269 17 p.

Research output: Contribution to journalArticle

Conserved mechanism of dorsoventral axis determination in equal-cleaving spiralians

Henry, J. J., Jan 1 2002, In : Developmental Biology. 248, 2, p. 343-355 13 p.

Research output: Contribution to journalArticle

Contribution of clinically derived mutations in ERG11 to azole resistance in Candida albicans

Flowers, S. A., Colón, B., Whaley, S. G., Schuler, M. A. & David Rogers, P., Jan 1 2015, In : Antimicrobial Agents and Chemotherapy. 59, 1, p. 450-460 11 p.

Research output: Contribution to journalArticle

Cornea-lens transdifferentiation in the anuran, Xenopus tropicalis

Henry, J. J. & Elkins, M. B., Oct 16 2001, In : Development Genes and Evolution. 211, 8-9, p. 377-387 11 p.

Research output: Contribution to journalArticle

Coronin-1A Stabilizes F-Actin by Bridging Adjacent Actin Protomers and Stapling Opposite Strands of the Actin Filament

Galkin, V. E., Orlova, A., Brieher, W., Kueh, H. Y., Mitchison, T. J. & Egelman, E. H., Feb 22 2008, In : Journal of Molecular Biology. 376, 3, p. 607-613 7 p.

Research output: Contribution to journalArticle

Counting bungarotoxin binding sites of nicotinic acetylcholine receptors in mammalian cells with high signal/noise ratios

Simonson, P. D., DeBerg, H. A., Ge, P., Alexander, J. K., Jeyifous, O., Green, W. N. & Selvin, P. R., Nov 17 2010, In : Biophysical journal. 99, 10, p. L81-L83

Research output: Contribution to journalArticle

Coupling of muscarinic cholinergic receptors and cGMP in nocturnal regulation of the suprachiasmatic circadian clock

Liu, C., Ding, J. M., Faiman, L. E. & Gillette, M. U., Jan 20 1997, In : Journal of Neuroscience. 17, 2, p. 659-666 8 p.

Research output: Contribution to journalArticle

CRISPR/Cas9-mediated genome modification in the mollusc, Crepidula fornicata

Perry, K. J. & Henry, J. Q., Feb 1 2015, In : Genesis. 53, 2, p. 237-244 8 p.

Research output: Contribution to journalArticle

CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci

Tasan, I., Sustackova, G., Zhang, L., Kim, J., Sivaguru, M., HamediRad, M., Wang, Y., Genova, J., Ma, J., Belmont, A. S. & Zhao, H., Jan 1 2018, In : Nucleic acids research. 46, 17, e100.

Research output: Contribution to journalArticle

Critical nuclear DNA size and distribution associated with S phase initiation - Peripheral location of initiation and termination sites

Nicolini, C., Belmont, A. S. & Martelli, A., Apr 1 1986, In : Cell Biophysics. 8, 2, p. 103-117 15 p.

Research output: Contribution to journalArticle

CRMP-1 enhances EVL-mediated actin elongation to build lamellipodia and the actin cortex

Yu-Kemp, H. C., Kemp, J. P. & Brieher, W. M., Jan 1 2017, In : Journal of Cell Biology. 216, 8, p. 2463-2479 17 p.

Research output: Contribution to journalArticle

Cross-resistance to α-cypermethrin after xanthotoxin ingestion in Helicoverpa zea (lepidoptera: noctuidae)

Xianchun, L. I., Zangerl, A. R., Schuler, M. A. & Berenbaum, M. R., Dec 1 2000, In : Journal of economic entomology. 93, 1, p. 18-25 8 p.

Research output: Contribution to journalArticle

Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge

Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., Seward, C. H., Sloofman, L., Chandrasekaran, S., Bell, A. M., Stubbs, L., Robinson, G. E., Zhao, S. D. & Sinha, S., Jan 2019, In : Genes, Brain and Behavior. 18, 1, p. e12502 e12502.

Research output: Contribution to journalArticle

Cryptic translocation identification in human and mouse using several telomeric multiplex FISH (TM-FISH) strategies

Henegariu, O., Artan, S., Greally, J. M., Chen, X. N., Korenberg, J. R., Vance, G. H., Stubbs, L., Bray-Ward, P. & Ward, D. C., Jan 1 2001, In : Laboratory Investigation. 81, 4, p. 483-491 9 p.

Research output: Contribution to journalArticle

Crystal structure of a phenol-coupling P450 monooxygenase involved in teicoplanin biosynthesis

Li, Z., Rupasinghe, S. G., Schuler, M. A. & Nair, S. K., Jun 1 2011, In : Proteins: Structure, Function and Bioinformatics. 79, 6, p. 1728-1738 11 p.

Research output: Contribution to journalArticle

Crystal structures of substrate-free and retinoic acid-bound cyanobacterial cytochrome P450 CYP120A1

Kühnel, K., Ke, N., Cryle, M. J., Sligar, S. G., Schuler, M. A. & Schlichting, I., Jun 24 2008, In : Biochemistry. 47, 25, p. 6552-6559 8 p.

Research output: Contribution to journalArticle

Cyclic changes in cAMP concentration and phosphodiesterase activity in a mammalian circadian clock studied in vitro

Prosser, R. A. & Gillette, M. U., Dec 24 1991, In : Brain Research. 568, 1-2, p. 185-192 8 p.

Research output: Contribution to journalArticle

CYP6B1 and CYP6B3 of the black swallowtail (Papilio polyxenes): Adaptive evolution through subfunctionalization

Wen, Z., Rupasinghe, S., Niu, G., Berenbaum, M. R. & Schuler, M. A., Dec 1 2006, In : Molecular biology and evolution. 23, 12, p. 2434-2443 10 p.

Research output: Contribution to journalArticle

CYP6B3: a second furanocoumarin‐inducible cytochrome P450 expressed in Papilio polyxenes

Hung, CF. F., Harrison, T. L., Berenbaum, M. R. & Schuler, M. A., Aug 1995, In : Insect Molecular Biology. 4, 3, p. 149-160 12 p.

Research output: Contribution to journalArticle

Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: Birth, death and adaptation

Calla, B., Noble, K., Johnson, R. M., Walden, K. K. O., Schuler, M. A., Robertson, H. M. & Berenbaum, M. R., Nov 2017, In : Molecular ecology. 26, 21, p. 6021-6035 15 p.

Research output: Contribution to journalArticle

Cytochrome P450 Genes from the Sacred Lotus Genome

Nelson, D. R. & Schuler, M. A., Sep 1 2013, In : Tropical Plant Biology. 6, 2-3, p. 138-151 14 p.

Research output: Contribution to journalArticle

Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways

Pan, Y., Michael, T. P., Hudson, M. E., Kay, S. A., Chory, J. & Schuler, M. A., Jun 1 2009, In : Plant physiology. 150, 2, p. 858-878 21 p.

Research output: Contribution to journalArticle

Cytology of DNA Replication Reveals Dynamic Plasticity of Large-Scale Chromatin Fibers

Deng, X., Zhironkina, O. A., Cherepanynets, V. D., Strelkova, O. S., Kireev, I. I. & Belmont, A. S., Sep 26 2016, In : Current Biology. 26, 18, p. 2527-2534 8 p.

Research output: Contribution to journalArticle

Deep vertebrate roots for mammalian zinc finger transcription factor subfamilies

Liu, H., Chang, L. H., Sun, Y., Lu, X. & Stubbs, L., Mar 2014, In : Genome biology and evolution. 6, 3, p. 510-525 16 p.

Research output: Contribution to journalArticle

Defining the minimal length of sequence homology required for selective gene isolation by TAR cloning

Noskov, V. N., Koriabine, M., Solomon, G., Randolph, M., Barrett, J. C., Leem, S. H., Stubbs, L., Kouprina, N. & Larionov, V., Mar 15 2001, In : Nucleic acids research. 29, 6, 1 p.

Research output: Contribution to journalArticle

Open Access

Defocused orientation and position imaging (DOPI) of myosin V

Toprak, E., Enderlein, J., Syed, S., McKinney, S. A., Petschek, R. G., Ha, T., Goldman, Y. E. & Selvin, P. R., Apr 25 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 17, p. 6495-6499 5 p.

Research output: Contribution to journalArticle

Delivery of Fluorescent Probes Using Streptolysin O for Fluorescence Microscopy of Living Cells

Teng, K. W., Ren, P. & Selvin, P. R., Jan 1 2018, (Accepted/In press) In : Current Protocols in Protein Science.

Research output: Contribution to journalArticle

Deployment of regulatory genes during gastrulation and germ layer specification in a model spiralian mollusc Crepidula

Perry, K. J., Lyons, D. C., Truchado-Garcia, M., Fischer, A. H. L., Helfrich, L. W., Johansson, K. B., Diamond, J. C., Grande, C. & Henry, J. Q., Oct 1 2015, In : Developmental Dynamics. 244, 10, p. 1215-1248 34 p.

Research output: Contribution to journalArticle

Designer deletion and prototrophic strains derived from Saccharomyces cerevisiae strain W303-1a

Replogle, K., Hovland, L. & Rivier, D. H., Aug 25 1999, In : Yeast. 15, 11, p. 1141-1149 9 p.

Research output: Contribution to journalArticle