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Spatial light interference microscopy (SLIM)

Wang, Z., Millet, L., Mir, M., Ding, H., Unarunotai, S., Rogers, J., Gillette, M. U. & Popescu, G., Jan 17 2011, In : Optics Express. 19, 2, p. 1016-1026 11 p.

Research output: Contribution to journalArticle

microscopy
interference
phase contrast
cells
optical paths

Spatial light interference tomography (SLIT)

Wang, Z., Marks, D. L., Carney, P. S., Millet, L. J., Gillette, M. U., Mihi, A., Braun, P. V., Shen, Z., Prasanth, S. G. & Popescu, G., Oct 10 2011, In : Optics Express. 19, 21, p. 19907-19918 12 p.

Research output: Contribution to journalArticle

tomography
refractivity
interference
numerical aperture
Born approximation

Spatiotemporal organization, regulation, and functions of tractions during neutrophil chemotaxis

Shin, M. E., He, Y., Li, D., Na, S., Chowdhury, F., Poh, Y. C., Collin, O., Su, P., De Lanerolle, P., Schwartz, M. A., Wang, N. & Wang, F., Oct 28 2010, In : Blood. 116, 17, p. 3297-3310 14 p.

Research output: Contribution to journalArticle

Myosin Type II
Traction
Chemotaxis
Neutrophils
Nonmuscle Myosin Type IIA

Spiralian gastrulation: Germ layer formation, morphogenesis, and fate of the blastopore in the slipper snail Crepidula fornicata

Lyons, D. C., Perry, K. J. & Henry, J. J., Jun 24 2015, In : EvoDevo. 6, 1, 24.

Research output: Contribution to journalArticle

Gastrula
Germ Layers
Gastrulation
morphogenesis
Snails

Spiralian model systems

Henry, J. Q., Jan 1 2014, In : International Journal of Developmental Biology. 58, 6-8, p. 389-401 13 p.

Research output: Contribution to journalArticle

Ecology
Molecular Biology
Life History Traits

Splicing-independent recruitment of spliceosomal small nuclear RNPs to nascent RNA polymerase II transcripts

Patel, S. B., Novikova, N. & Bellini, M., Sep 10 2007, In : Journal of Cell Biology. 178, 6, p. 937-949 13 p.

Research output: Contribution to journalArticle

Small Nuclear Ribonucleoproteins
RNA Polymerase II
Oocytes
Spliceosomes
Small Nuclear RNA

SRSF1 regulates the assembly of pre-mRNA processing factors in nuclear speckles

Tripathi, V., Song, D. Y., Zong, X., Shevtsov, S. P., Hearn, S., Fu, X. D., Dundr, M. & Prasanth, K. V., Sep 15 2012, In : Molecular biology of the cell. 23, 18, p. 3694-3706 13 p.

Research output: Contribution to journalArticle

RNA Precursors
Interphase
Cell Nucleus
RNA
Gene Expression

Stable and reproducible transgene expression independent of proliferative or differentiated state using BAC TG-EMBED

Chaturvedi, P., Zhao, B., Zimmerman, D. L. & Belmont, A. S., Aug 1 2018, In : Gene therapy. 25, 5, p. 376-391 16 p.

Research output: Contribution to journalArticle

Transgenes
Cell Differentiation
Chromosomes
NIH 3T3 Cells
Biotechnology

Stable small quantum dots for synaptic receptor tracking on live neurons

Cai, E., Ge, P., Lee, S. H., Jeyifous, O., Wang, Y., Liu, Y., Wilson, K. M., Lim, S. J., Baird, M. A., Stone, J. E., Lee, K. Y., Davidson, M. W., Chung, H. J., Schulten, K., Smith, A. M., Green, W. N. & Selvin, P. R., Nov 10 2014, In : Angewandte Chemie - International Edition. 53, 46, p. 12484-12488 5 p.

Research output: Contribution to journalArticle

Neurotransmitter Receptor
Semiconductor quantum dots
Neurons
AMPA Receptors
Functional groups

Step-size is determined by neck length in myosin V

Sakamoto, T., Yildez, A., Selvin, P. R. & Sellers, J. R., Dec 13 2005, In : Biochemistry. 44, 49, p. 16203-16210 8 p.

Research output: Contribution to journalArticle

Myosin Type V
Neck
Actins
Actin Cytoskeleton
Calmodulin

Steroid receptor coactivator-1 is a histone acetyltransferase

Spencer, T. E., Jenster, G., Burcin, M. M., Allis, C. D., Zhou, J., Mizzen, C. A., McKenna, N. J., Onate, S. A., Tsai, S. Y., Tsai, M. J. & O'Malley, B. W., Oct 2 1997, In : Nature. 389, 6647, p. 194-198 5 p.

Research output: Contribution to journalArticle

Nuclear Receptor Coactivator 1
Histone Acetyltransferases
Steroid Receptors
Chromatin
Histones

Stimulation of yeast telomerase activity by the ever shorter telomere 3 (Est3) subunit is dependent on direct interaction with the catalytic protein Est2

Talley, J. M., DeZwaan, D. C., Maness, L. D., Freeman, B. C. & Friedman, K. L., Jul 29 2011, In : Journal of Biological Chemistry. 286, 30, p. 26431-26439 9 p.

Research output: Contribution to journalArticle

Telomerase
Telomere
Yeast
Yeasts
Proteins

Stoichiometry and assembly of mTOR complexes revealed by single-molecule pulldown

Jain, A., Arauz, E., Aggarwal, V., Ikon, N., Chen, J. & Ha, T., Dec 16 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 50, p. 17833-17838 6 p.

Research output: Contribution to journalArticle

Sirolimus
Raptors
Dimerization
Fluorescence Microscopy
Phosphotransferases

Structural analysis of elements contributing to 5' splice site selection in plant pre-mRNA transcripts

Egoavil, C., Marton, H. A., Baynton, C. E., McCullough, A. J. & Schuler, M. A., Jan 1 1997, In : Plant Journal. 12, 5, p. 971-980 10 p.

Research output: Contribution to journalArticle

RNA Splice Sites
RNA Precursors
introns
mutation
exons
Insect Proteins
flavone
Cytochrome P-450 Enzyme System
Pheromones
Diazinon

Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase α

Sun, J., Yang, Y., Wan, K., Mao, N., Yu, T. Y., Lin, Y. C., Dezwaan, D. C., Freeman, B. C., Lin, J. J., Lue, N. F. & Lei, M., Feb 2011, In : Cell Research. 21, 2, p. 258-274 17 p.

Research output: Contribution to journalArticle

Catalytic DNA
Fungal Proteins
Telomere
Dimerization
DNA-Directed DNA Polymerase

Structural Contributions to Hydrodynamic Diameter for Quantum Dots Optimized for Live-Cell Single-Molecule Tracking

Sheung, J. Y., Ge, P., Lim, S. J., Lee, S. H., Smith, A. M. & Selvin, P. R., Aug 2 2018, In : Journal of Physical Chemistry C. 122, 30, p. 17406-17412 7 p.

Research output: Contribution to journalArticle

Streptavidin
Semiconductor quantum dots
Hydrodynamics
hydrodynamics
quantum dots
Molecular modeling
Cytochromes
cytochromes
Mixed Function Oxygenases
toxin
Pleurobranchaea
Cheek
action potentials
Action Potentials
mechanism of action

Substrates of command ability in a buccal neuron of Pleurobranchaea - II. Potential role of cyclic AMP

Gillette, R., Gillette, M. U. & Davis, W. J., Dec 1 1982, In : Journal of Comparative Physiology □ A. 146, 4, p. 461-470 10 p.

Research output: Contribution to journalArticle

Pleurobranchaea
Aptitude
Cheek
cyclic AMP
Adenosine Monophosphate
Depressaria pastinacella
Pastinaca
psoralens
substrate specificity
Substrate Specificity

Super-resolution imaging of synaptic and extra-synaptic AMPA receptors with Different-Sized fluorescent probes

Lee, S. H., Jin, C., Cai, E., Ge, P., Ishitsuka, Y., Teng, K. W., De Thomaz, A. A., Nall, D., Baday, M., Jeyifous, O., Demonte, D., Dundas, C. M., Park, S., Delgado, J. Y., Green, W. N. & Selvin, P. R., Jul 27 2017, In : eLife. 6, e27744.

Research output: Contribution to journalArticle

Post-Synaptic Density
Neurotransmitter Receptor
AMPA Receptors
Fluorescent Dyes
Imaging techniques

Suprachiasmatic circadian pacemaker of rat shows two windows of sensitivity to neuropeptide Y in vitro

Medanic, M. & Gillette, M. L., Aug 27 1993, In : Brain Research. 620, 2, p. 281-286 6 p.

Research output: Contribution to journalArticle

Neuropeptide Y
In Vitro Techniques

Synaptopodin couples epithelial contractility to α-actinin-4-dependent junction maturation

Kannan, N. & Tang, V. W., Oct 26 2015, In : Journal of Cell Biology. 211, 2, p. 407-434 28 p.

Research output: Contribution to journalArticle

Actinin
Intercellular Junctions
Vinculin
Actins
Myosin Type II

Synchronization and phase-resetting by glutamate of an immortalized SCN cell line

Hurst, W. J., Mitchell, J. W. & Gillette, M. L., Nov 1 2002, In : Biochemical and Biophysical Research Communications. 298, 1, p. 133-143 11 p.

Research output: Contribution to journalArticle

Glutamic Acid
Synchronization
Circadian Clocks
Cells
Cell Line
Cytochromes b5
Mutagenesis
Gene Expression
Histidine
Hemeproteins
Europium
Pentetic Acid
europium
chelates
antennas

Taranis Protects Regenerating Tissue from Fate Changes Induced by the Wound Response in Drosophila

Schuster, K. J. & Smith-Bolton, R., Jul 6 2015, In : Developmental cell. 34, 1, p. 119-128 10 p.

Research output: Contribution to journalArticle

Drosophila
Tissue
Wounds and Injuries
Regeneration
Genes

Task-related differential expression of four cytochrome P450 genes in honeybee appendages

Mao, W., Schuler, M. A. & Berenbaum, M. R., Oct 1 2015, In : Insect Molecular Biology. 24, 5, p. 582-588 7 p.

Research output: Contribution to journalArticle

appendages
cytochrome P-450
Cytochrome P-450 Enzyme System
honey bees
Leg

Tbx18 Regulates the Differentiation of Periductal Smooth Muscle Stroma and the Maintenance of Epithelial Integrity in the Prostate

Bolt, C. C., Negi, S., Guimarães-Camboa, N., Zhang, H., Troy, J. M., Lu, X., Kispert, A., Evans, S. M. & Stubbs, L., Jan 1 2016, In : PloS one. 11, 4, p. e0154413

Research output: Contribution to journalArticle

smooth muscle
Smooth Muscle
Muscle
Prostate
sinuses

Temporal association of ORCA/LRWD1 to late-firing origins during G1 dictates heterochromatin replication and organization

Wang, Y., Khan, A., Marks, A. B., Smith, O. K., Giri, S., Lin, Y. C., Creager, R., MacAlpine, D. M., Prasanth, K. V., Aladjem, M. I. & Prasanth, S. G., Mar 17 2017, In : Nucleic acids research. 45, 5, p. 2490-2502 13 p.

Research output: Contribution to journalArticle

Heterochromatin
Chromatin
Origin Recognition Complex
DNA Replication
S Phase

Temporal dynamics of neurogenomic plasticity in response to social interactions in male threespined sticklebacks

Bukhari, S. A., Saul, M. C., Seward, C. H., Zhang, H., Bensky, M., James, N., Zhao, S. D., Chandrasekaran, S., Stubbs, L. & Bell, A. M., Jul 2017, In : PLoS genetics. 13, 7, e1006840.

Research output: Contribution to journalArticle

Smegmamorpha
Gasterosteidae
Interpersonal Relations
plasticity
chromatin

Temporally and spectrally resolved imaging microscopy of lanthanide chelates

Vereb, G., Jares-Erijman, E., Selvin, P. R. & Jovin, T. M., May 1998, In : Biophysical journal. 74, 5, p. 2210-2222 13 p.

Research output: Contribution to journalArticle

Lanthanoid Series Elements
Microscopy
Fluorescence
Fluorescence Resonance Energy Transfer
Xenon

Temporally restricted role of retinal PACAP: Integration of the phase-advancing light signal to the SCN

Beaulé, C., Mitchell, J. W., Lindberg, P. T., Damadzic, R., Eiden, L. E. & Gillette, M. U., Apr 1 2009, In : Journal of biological rhythms. 24, 2, p. 126-134 9 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Adenylyl Cyclases
Light
Peptides
Circadian Clocks

Textural guidance cues for controlling process outgrowth of mammalian neurons

Hanson, J. N., Motala, M. J., Heien, M. L., Gillette, M., Sweedler, J. & Nuzzo, R. G., Jan 1 2009, In : Lab on a chip. 9, 1, p. 122-131 10 p.

Research output: Contribution to journalArticle

Neurons
Cues
Growth
Aplysia
Substrates

The actin filament bundling protein α-actinin-4 actually suppresses actin stress fibers by permitting actin turnover

Kemp, J. P. & Brieher, W. M., Jan 1 2018, In : Journal of Biological Chemistry. 293, 37, p. 14520-14533 14 p.

Research output: Contribution to journalArticle

Actinin
Stress Fibers
Actins
Tropomyosin
Fibers

The assembly of a spliceosomal small nuclear ribonucleoprotein particle

Patel, S. B. & Bellini, M., Nov 28 2008, In : Nucleic acids research. 36, 20, p. 6482-6493 12 p.

Research output: Contribution to journalArticle

Small Nuclear Ribonucleoproteins
U4-U6 Small Nuclear Ribonucleoproteins
U5 Small Nuclear Ribonucleoproteins
U2 Small Nuclear Ribonucleoproteins
U1 Small Nuclear Ribonucleoproteins

The cell lineage of a polyclad turbellarian embryo reveals close similarity to coelomate spiralians

Boyer, B. C., Henry, J. J. & Martindale, M. Q., Dec 1 1998, In : Developmental Biology. 204, 1, p. 111-123 13 p.

Research output: Contribution to journalArticle

Cell Lineage
Ectoderm
Embryonic Structures
Mesoderm
Platyhelminths

The cell lineage of the polyplacophoran, Chaetopleura apiculata: Variation in the spiralian program and implications for molluscan evolution

Henry, J. Q., Okusu, A. & Martindale, M. Q., Aug 1 2004, In : Developmental Biology. 272, 1, p. 145-160 16 p.

Research output: Contribution to journalArticle

Cell Lineage
Polyplacophora
Mollusca
Larva
Cephalopoda

The Cellular and Molecular Bases of Vertebrate Lens Regeneration

Henry, J. J., Jan 1 2003, In : International Review of Cytology. 228, p. 195-265 71 p.

Research output: Contribution to journalArticle

Lenses
Vertebrates
Regeneration
Fibroblast Growth Factors
Retinoids

The cellular world according to Hsp90

Richter, K., Hendershot, L. M. & Freeman, B. C., Feb 1 2007, In : Nature Structural and Molecular Biology. 14, 2, p. 90-94 5 p.

Research output: Contribution to journalArticle

Molecular Chaperones
Germany

The conserved Est1 protein stimulates telomerase DNA extension activity

DeZwaan, D. C. & Freeman, B. C., Oct 13 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 41, p. 17337-17342 6 p.

Research output: Contribution to journalArticle

Telomerase
DNA
Proteins
Holoenzymes
Saccharomycetales

The cytochrome P450 gene family CYP157 does not contain EXXR in the K-helix reducing the absolute conserved P450 residues to a single cysteine

Rupasinghe, S., Schuler, M. A., Kagawa, N., Yuan, H., Lei, L., Zhao, B., Kelly, S. L., Waterman, M. R. & Lamb, D. C., Nov 27 2006, In : FEBS Letters. 580, 27, p. 6338-6342 5 p.

Research output: Contribution to journalArticle

Streptomyces coelicolor
Mutagenesis
Site-Directed Mutagenesis
Heme
Cytochrome P-450 Enzyme System
Sea Urchins
Embryonic Structures
Cell Communication
Embryonic Development
Research

The DNA end-binding protein Ku regulates silencing at the internal HML and HMR loci in Saccharomyces cerevisiae

Vandre, C. L., Kamakaka, R. T. & Rivier, D. H., Nov 1 2008, In : Genetics. 180, 3, p. 1407-1418 12 p.

Research output: Contribution to journalArticle

Telomere
DNA-Binding Proteins
Saccharomyces cerevisiae
Yeasts
Heterochromatin

The DNA sequence and biology of human chromosome 19

Grimwood, J., Gordon, L. A., Olsen, A., Terry, A., Schmutz, J., Lamerdin, J., Hellsten, U., Goodstein, D., Couronne, O., Tran-Gyamil, M., Aerts, A., Altherr, M., Ashworth, L., Bajorek, E., Black, S., Branscomb, E., Caenepeel, S., Carrano, A., Caoile, C., Chan, Y. M. & 78 others, Christensen, M., Cleland, C. A., Copeland, A., Dalin, E., Dehal, P., Denys, M., Detter, J. C., Escobar, J., Flowers, D., Fotopolus, D., Garcia, C., Georgescu, A. M., Glavina, T., Gomez, M., Gonzales, E., Groza, M., Hammon, N., Hawkins, T., Haydu, L., Ho, I., Huang, W., Israni, S., Jett, J., Kadner, K., Kimball, H., Kobayashi, A., Larionov, V., Leem, S. H., Lopez, F., Lou, Y., Lowry, S., Malfatti, S., Martinez, D., McCready, P., Medina, C., Morgan, J., Nelson, K., Nolan, M., Ovcharenko, I., Pitluck, S., Pollard, M., Popkie, A. P., Predki, P., Quan, G., Ramirez, L., Rash, S., Retterer, J., Rodriguez, A., Rogers, S., Salamov, A., Salazar, A., She, X., Smith, D., Slezak, T., Solovyev, V., Thayer, N., Tice, H., Tsai, M., Ustaszewska, A., Vo, N., Wagner, M., Wheeler, J., Wu, K., Xie, G., Yang, J., Dubchak, I., Furey, T. S., DeJong, P., Dickson, M., Gordon, D., Eichler, E. E., Pennacchio, L. A., Richardson, P., Stubbs, L., Rokhsar, D. S., Myers, R. M., Rubin, E. M. & Lucas, S. M., Apr 1 2004, In : Nature. 428, 6982, p. 529-535 7 p.

Research output: Contribution to journalArticle

Chromosomes, Human, Pair 19
Human Chromosomes
Genes
Chromosomes
Takifugu

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

Ming, R., Hou, S., Feng, Y., Yu, Q., Dionne-Laporte, A., Saw, J. H., Senin, P., Wang, W., Ly, B. V., Lewis, K. L. T., Salzberg, S. L., Feng, L., Jones, M. R., Skelton, R. L., Murray, J. E., Chen, C., Qian, W., Shen, J., Du, P., Eustice, M. & 65 others, Tong, E., Tang, H., Lyons, E., Paull, R. E., Michael, T. P., Wall, K., Rice, D. W., Albert, H., Wang, M. L., Zhu, Y. J., Schatz, M., Nagarajan, N., Acob, R. A., Guan, P., Blas, A., Wai, C. M., Ackerman, C. M., Ren, Y., Liu, C., Wang, J., Wang, J., Na, J. K., Shakirov, E. V., Haas, B., Thimmapuram, J., Nelson, D., Wang, X., Bowers, J. E., Gschwend, A. R., Delcher, A. L., Singh, R., Suzuki, J. Y., Tripathi, S., Neupane, K., Wei, H., Irikura, B., Paidi, M., Jiang, N., Zhang, W., Presting, G., Windsor, A., Navajas-Pérez, R., Torres, M. J., Feltus, F. A., Porter, B., Li, Y., Burroughs, A. M., Luo, M. C., Liu, L., Christopher, D. A., Mount, S. M., Moore, P. H., Sugimura, T., Jiang, J., Schuler, M. A., Friedman, V., Mitchell-Olds, T., Shippen, D. E., Depamphilis, C. W., Palmer, J. D., Freeling, M., Paterson, A. H., Gonsalves, D., Wang, L. & Alam, M., Apr 24 2008, In : Nature. 452, 7190, p. 991-996 6 p.

Research output: Contribution to journalArticle

Carica
Fruit
Genome
Angiosperms
Genes

The Drosophila Duox maturation factor is a key component of a positive feedback loop that sustains regeneration signaling

Khan, S. J., Abidi, S. N. F., Skinner, A., Tian, Y. & Smith-Bolton, R. K., Jul 2017, In : PLoS genetics. 13, 7, e1006937.

Research output: Contribution to journalArticle

Drosophila
maturation
Regeneration
regeneration
imaginal discs

The dynamics of homologous chromosome pairing during male Drosophila meiosis

Vazquez, J., Belmont, A. S. & Sedat, J. W., Sep 3 2002, In : Current Biology. 12, 17, p. 1473-1483 11 p.

Research output: Contribution to journalArticle

Chromosome Pairing
chromosome pairing
Meiosis
Chromosomes
meiosis

The establishment of embryonic axial properties in the nemertean, Cerebratulus lacteus

Henry, J. Q. & Martindale, M. Q., Dec 15 1996, In : Developmental Biology. 180, 2, p. 713-721 9 p.

Research output: Contribution to journalArticle

Embryonic Structures
Larva
Zygote
Cell Lineage