Research Output 1972 2019

Filter
Article

3D microperiodic hydrogel scaffolds for robust neuronal cultures

Hanson Shepherd, J. N., Parker, S. T., Shepherd, R. F., Gillette, M. L., Lewis, J. A. & Nuzzo, R. G., Jan 7 2011, In : Advanced Functional Materials. 21, 1, p. 47-54 8 p.

Research output: Contribution to journalArticle

Hydrogel
Hydrogels
Scaffolds
inks
cells

3D super-resolution imaging with blinking quantum dots

Wang, Y., Fruhwirth, G., Cai, E., Ng, T. & Selvin, P. R., Nov 13 2013, In : Nano letters. 13, 11, p. 5233-5241 9 p.

Research output: Contribution to journalArticle

blinking
Semiconductor quantum dots
quantum dots
Imaging techniques
Photobleaching

3′ Splice Site Selection in Dicot Plant Nuclei Is Position Dependent

Lou, H., Mccullough, A. J. & Schuler, M. A., Aug 1993, In : Molecular and cellular biology. 13, 8, p. 4485-4493 9 p.

Research output: Contribution to journalArticle

RNA Splice Sites
Introns
AU Rich Elements
RNA Precursors
Exons

A 1.3 kb satellite DNA from Bubalus bubalis not conserved evolutionarily is transcribed

Bhatnagar, S., Bashamboo, A., Chattopadhyay, M., Prasanth, S. G. & Ali, S., Nov 1 2004, In : Zeitschrift fur Naturforschung - Section C Journal of Biosciences. 59, 11-12, p. 874-879 6 p.

Research output: Contribution to journalArticle

Satellite DNA
satellite DNA
RNA-directed DNA polymerase
Buffaloes
RNA-Directed DNA Polymerase

A BEN-domain-containing protein associates with heterochromatin and represses transcription

Sathyan, K. M., Shen, Z., Tripathi, V., Kannanganattu, P. K. & Prasanth, S. G., Sep 15 2011, In : Journal of cell science. 124, 18, p. 3149-3163 15 p.

Research output: Contribution to journalArticle

Heterochromatin
Chromatin
Histone Deacetylases
Cell Cycle Checkpoints
Eukaryota

Accessions of Solanum tuberosum ssp. andigena show differences in photosynthetic recovery after drought stress as reflected in gene expression profiles

Watkinson, J. I., Hendricks, L., Sioson, A. A., Vasquez-Robinet, C., Stromberg, V., Heath, L. S., Schuler, M. A., Bohnert, H. J., Bonierbale, M. & Grene, R., Dec 1 2006, In : Plant Science. 171, 6, p. 745-758 14 p.

Research output: Contribution to journalArticle

Acclimatization
Droughts
Solanum tuberosum
Transcriptome
acclimation

A cell-instructive hydrogel to regulate malignancy of 3D tumor spheroids with matrix rigidity

Liang, Y., Jeong, J., DeVolder, R. J., Cha, C., Wang, F., Tong, Y. W. & Kong, H., Dec 1 2011, In : Biomaterials. 32, 35, p. 9308-9315 8 p.

Research output: Contribution to journalArticle

Hydrogel
Hydrogels
Rigidity
Tumors
Gels

A cleavage clock regulates features of lineage-specific differentiation in the development of a basal branching metazoan, the ctenophore Mnemiopsis leidyi

Fischer, A. H. L., Pang, K., Henry, J. Q. & Martindale, M. Q., Jan 31 2014, In : EvoDevo. 5, 1, 4.

Research output: Contribution to journalArticle

Ctenophora
Mnemiopsis leidyi
metazoan
cleavage
branching

A comparison between the sulfhydryl reductants tris(2- carboxyethyl)phosphine and dithiothreitol for use in protein biochemistry

Getz, E. B., Xiao, M., Chakrabarty, T., Cooke, R. & Selvin, P. R., Aug 15 1999, In : Analytical Biochemistry. 273, 1, p. 73-80 8 p.

Research output: Contribution to journalArticle

Biochemistry
Dithiothreitol
Reducing Agents
Myosins
Proteins

A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

Huntley, S., Baggott, D. M., Hamilton, A. T., Tran-Gyamfi, M., Yang, S., Kim, J., Gordon, L., Branscomb, E. & Stubbs, L. J., May 1 2006, In : Genome Research. 16, 5, p. 669-677 9 p.

Research output: Contribution to journalArticle

Zinc Fingers
History
Genes
Proteins
Mammals

Actin disassembly by cofilin, coronin, and Aip1 occurs in bursts and is inhibited by barbed-end cappers

Hao, Y. K., Charras, G. T., Mitchison, T. J. & Brieher, W. M., Jul 28 2008, In : Journal of Cell Biology. 182, 2, p. 341-353 13 p.

Research output: Contribution to journalArticle

Actin Depolymerizing Factors
Actins
Cytochalasin D
Actin Cytoskeleton
Pharmaceutical Preparations

Actin-driven cell dynamics probed by Fourier transform light scattering

Ding, H., Millet, L. J., Gillette, M. L. & Popescu, G., Aug 2 2010, In : Biomedical Optics Express. 1, 1, p. 260-267 8 p.

Research output: Contribution to journalArticle

Fourier Analysis
Actins
light scattering
Light
cells

Activation of MT2 melatonin receptors in rat suprachiasmatic nucleus phase advances the circadian clock

Hunt, A. E., Al-Ghoul, W. M., Gillette, M. L. & Dubocovich, M. L., Jun 21 2001, In : American Journal of Physiology - Cell Physiology. 280, 1 49-1

Research output: Contribution to journalArticle

Melatonin MT2 Receptor
Melatonin Receptors
Circadian Clocks
Suprachiasmatic Nucleus
Melatonin MT1 Receptor

Activation of mTOR signaling by novel fluoromethylene phosphonate analogues of phosphatidic acid

Xu, Y., Fang, Y., Chen, J. & Prestwich, G. D., Mar 22 2004, In : Bioorganic and Medicinal Chemistry Letters. 14, 6, p. 1461-1464 4 p.

Research output: Contribution to journalArticle

Organophosphonates
Phosphatidic Acids
Sirolimus
Chemical activation
Ribosomal Protein S6 Kinases

Active Antioxidizing Particles for On-Demand Pressure-Driven Molecular Release

Seo, Y., Leong, J., Teo, J. Y., Mitchell, J. W., Gillette, M. L., Han, B., Lee, J. & Kong, H. J., Oct 18 2017, In : ACS Applied Materials and Interfaces. 9, 41, p. 35642-35650 9 p.

Research output: Contribution to journalArticle

Nanosheets
Reactive Oxygen Species
Oxygen
Antioxidants
Tissue

Activity-dependent regulation of retinogeniculate signaling by metabotropic glutamate receptors

Govindaiah, G., Wang, T., Gillette, M. L. & Cox, C. L., Sep 12 2012, In : Journal of Neuroscience. 32, 37, p. 12820-12831 12 p.

Research output: Contribution to journalArticle

Metabotropic Glutamate Receptors
Geniculate Bodies
Neurons
Glutamic Acid
Synaptic Transmission

Adaptability of myosin V studied by simultaneous detection of position and orientation

Syed, S., Snyder, G. E., Franzini-Armstrong, C., Selvin, P. R. & Goldman, Y. E., May 3 2006, In : EMBO Journal. 25, 9, p. 1795-1803 9 p.

Research output: Contribution to journalArticle

Myosin Type V
Molecules
Rhodamines
Structural dynamics
Calmodulin

ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins

Anantharaman, A., Tripathi, V., Khan, A., Yoon, J. H., Singh, D. K., Gholamalamdari, O., Guang, S., Ohlson, J., Wahlstedt, H., Öhman, M., Jantsch, M. F., Conrad, N. K., Ma, J., Gorospe, M., Prasanth, S. G. & Kannanganattu, P. K., Apr 20 2017, In : Nucleic acids research. 45, 7, p. 4189-4201 13 p.

Research output: Contribution to journalArticle

Nuclear RNA
RNA-Binding Proteins
RNA Stability
RNA
RNA Editing

A deficit of detoxification enzymes: Pesticide sensitivity and environmental response in the honeybee

Claudianos, C., Ranson, H., Johnson, R. M., Biswas, S., Schuler, M. A., Berenbaum, M. R., Feyereisen, R. & Oakeshott, J. G., Oct 1 2006, In : Insect Molecular Biology. 15, 5, p. 615-636 22 p.

Research output: Contribution to journalArticle

Cholinesterases
Mixed Function Oxygenases
Glutathione Transferase
Pesticides
honey bees

A dietary phytochemical alters caste-associated gene expression in honey bees

Mao, W., Schuler, M. A. & Berenbaum, M. R., Aug 2015, In : Science Advances. 1, 7, e1500795.

Research output: Contribution to journalArticle

Honey
Bees
Phytochemicals
Social Class
Larva

A distant downstream enhancer directs essential expression of Tbx18 in urogenital tissues

Bolt, C. C., Elso, C. M., Lu, X., Pan, F., Kispert, A. & Stubbs, L. J., Aug 15 2014, In : Developmental Biology. 392, 2, p. 483-493 11 p.

Research output: Contribution to journalArticle

Homozygote
Phenotype
Mutation
Inner Ear
Point Mutation

Aflatoxin B1 detoxification by CYP321A1 in Helicoverpa zea

Niu, G., Wen, Z., Rupasinghe, S. G., Ren, S. Z., Berenbaum, M. R. & Schuler, M. A., Sep 1 2008, In : Archives of Insect Biochemistry and Physiology. 69, 1, p. 32-45 14 p.

Research output: Contribution to journalArticle

Detoxification
Aflatoxin B1
Helicoverpa zea
aflatoxin B1
midgut

A fluorescence photobleaching study of the microsecond reorientational motions of DNA

Scalettar, B. A., Selvin, P. R., Axelrod, D., Hearst, J. E. & Klein, M. P., Jan 1 1988, In : Biophysical journal. 53, 2, p. 215-226 12 p.

Research output: Contribution to journalArticle

Fluorescence Recovery After Photobleaching
Photobleaching
Fluorescence
DNA
Coloring Agents

A gain-of-function polymorphism controlling complex traits and fitness in nature

Prasad, K. V. S. K., Song, B. H., Olson-Manning, C., Anderson, J. T., Lee, C. R., Schranz, M. E., Windsor, A. J., Clauss, M. J., Manzaneda, A. J., Naqvi, I., Reichelt, M., Gershenzon, J., Rupasinghe, S. G., Schuler, M. A. & Mitchell-Olds, T., Aug 31 2012, In : Science. 337, 6098, p. 1081-1084 4 p.

Research output: Contribution to journalArticle

Glucosinolates
Herbivory
Internal-External Control
Gene Dosage
Quantitative Trait Loci

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Wong, G. K. S., Liu, B., Wang, J., Zhang, Y., Yang, X., Zhang, Z., Meng, Q., Zhou, J., Li, D., Zhang, J., Ni, P., Li, S., Ran, L., Li, H., Zhang, J., Li, R., Li, S., Zheng, H., Lin, W., Li, G. & 94 others, Wang, X., Zhao, W., Li, J., Ye, C., Dai, M., Ruan, J., Zhou, Y., Li, Y., He, X., Zhang, Y., Wang, J., Huang, X., Tong, W., Chen, J., Ye, J., Chen, C., Wei, N., Li, G., Dong, L., Lan, F., Sun, Y., Zhang, Z., Yang, Z., Yu, Y., Huang, Y., He, D., Xi, Y., Wei, D., Qi, Q., Li, W., Shi, J., Wang, M., Xie, F., Wang, J., Zhang, X., Wang, P., Zhao, Y., Li, N., Yang, N., Dong, W., Hu, S., Zeng, C., Zheng, W., Hao, B., Hillier, L. D. W., Yang, S. P., Warren, W. C., Wilson, R. K., Brandström, M., Ellegren, H., Crooijmans, R. P. M. A., van der Poel, J. J., Bovenhuis, H., Groenen, M. A. M., Ovcharenko, I., Gordon, L., Stubbs, L., Lucas, S., Glavina, T., Aerts, A., Kaiser, P., Rothwell, L., Young, J. R., Rogers, S., Walker, B. A., van Hateren, A., Kaufman, J., Bumstead, N., Lamont, S. J., Zhou, H., Hocking, P. M., Morrice, D., de Koning, D. J., Law, A., Bartley, N., Burt, D. W., Hunt, H., Cheng, H. H., Gunnarsson, U., Wahlberg, P., Andersson, L., Kindlund, E., Tammi, M. T., Andersson, B., Webber, C., Ponting, C. P., Overton, I. M., Boardman, P. E., Tang, H., Hubbard, S. J., Wilson, S. A., Yu, J., Wang, J. & Yang, H. M., Dec 9 2004, In : Nature. 432, 7018, p. 717-722 6 p.

Research output: Contribution to journalArticle

Single Nucleotide Polymorphism
Chickens
Domestic Animals
Poultry
Nucleotides
Methoxsalen
Molecular Evolution
Molecular Cloning
Cytochrome P-450 Enzyme System
Herbivory

Aip1 destabilizes cofilin-saturated actin filaments by severing and accelerating monomer dissociation from ends

Nadkarni, A. V. & Brieher, W. M., Dec 1 2014, In : Current Biology. 24, 23, p. 2749-2757 9 p.

Research output: Contribution to journalArticle

Actin Depolymerizing Factors
microfilaments
Actin Cytoskeleton
actin
Actins

Aligning Synthetic Hippocampal Neural Circuits via Self-Rolled-Up Silicon Nitride Microtube Arrays

Cangellaris, O. V., Corbin, E. A., Froeter, P., Michaels, J. A., Li, X. & Gillette, M. L., Oct 24 2018, In : ACS Applied Materials and Interfaces. 10, 42, p. 35705-35714 10 p.

Research output: Contribution to journalArticle

Silicon nitride
Neurons
Networks (circuits)
Neurodegenerative diseases
Substrates

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M. A., Chen, L., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R. R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Saccharum
Alleles
Genome
Chromosomes, Human, Pair 4
Disease Resistance

Allele-specific deposition of macroH2A1 in imprinting control regions

Choo, J. H., Kim, J. D., Chung, J. H., Stubbs, L. & Kim, J., Mar 1 2006, In : Human molecular genetics. 15, 5, p. 717-724 8 p.

Research output: Contribution to journalArticle

Alleles
X Chromosome
CpG Islands
DNA Methylation
Epigenomics

Allele-specific enhancer interaction at the Peg3 imprinted domain

Kim, J., Frey, W. D., Sharma, K., Ghimire, S., Teruyama, R. & Stubbs, L., Jan 1 2019, In : PloS one. 14, 10, e0224287.

Research output: Contribution to journalArticle

Open Access
Conformations
Brain
Animals
Genes
Alleles
NADPH-Ferrihemoprotein Reductase
Pheromones
Metabolism
Mixed Function Oxygenases
Cytochrome P-450 Enzyme System

Allelochemical induction of cytochrome P450 monooxygenases and amelioration of xenobiotic toxicity in Helicoverpa zea

Zeng, R. S., Wen, Z., Niu, G., Schuler, M. A. & Berenbaum, M. R., Mar 1 2007, In : Journal of Chemical Ecology. 33, 3, p. 449-461 13 p.

Research output: Contribution to journalArticle

methoxsalen
Aryl Hydrocarbon Hydroxylases
Methoxsalen
allelochemical
Helicoverpa zea

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression

Bernard, D., Kannanganattu, P. K., Tripathi, V., Colasse, S., Nakamura, T., Xuan, Z., Zhang, M. Q., Sedel, F., Jourdren, L., Coulpier, F., Triller, A., Spector, D. L. & Bessis, A., Sep 2010, In : EMBO Journal. 29, 18, p. 3082-3093 12 p.

Research output: Contribution to journalArticle

Untranslated RNA
Gene expression
Transcription
Neoplasm Metastasis
Gene Expression

Alteration of a single hydrogen bond between class II molecules and peptide results in rapid degradation of class ii molecules after invariant chain removal

Ceman, S. S., Wu, S., Jardetzky, T. S. & Sant, A. J., Dec 7 1998, In : Journal of Experimental Medicine. 188, 11, p. 2139-2149 11 p.

Research output: Contribution to journalArticle

Hydrogen
Peptides
Endosomes
Peptide Hydrolases
Golgi Apparatus

Alteration of large-scale chromatin structure by estrogen receptor

Nye, A. C., Rajendran, R. R., Stenoien, D. L., Mancini, M. A., Katzenellenbogen, B. S. & Belmont, A. S., May 9 2002, In : Molecular and cellular biology. 22, 10, p. 3437-3449 13 p.

Research output: Contribution to journalArticle

Estrogen Receptors
Chromatin
Lac Repressors
Estradiol
Nuclear Receptor Coactivator 1

Aluminum-binding serum proteins: desferrioxamine alters serum aluminum speciation

Favarato, M., Mizzen, C. A., Sutherland, M. K., krishnan, B., Kruck, T. P. A. & McLachlan, D. R. C., Apr 30 1992, In : Clinica Chimica Acta. 207, 1-2, p. 41-55 15 p.

Research output: Contribution to journalArticle

Deferoxamine
Aluminum
Blood Proteins
Carrier Proteins
Serum

A microcontroller-based failsafe for single photon counting modules

Gordon, M. P. & Selvin, P. R., Feb 1 2003, In : Review of Scientific Instruments. 74, 2, p. 1150-1152 3 p.

Research output: Contribution to journalArticle

Microcontrollers
counting
Photons
modules
Avalanche photodiodes

A MicroRNA Imparts Robustness against Environmental Fluctuation during Development

Li, X., Cassidy, J. J., Reinke, C. A., Fischboeck, S. & Carthew, R. W., Apr 17 2009, In : Cell. 137, 2, p. 273-282 10 p.

Research output: Contribution to journalArticle

MicroRNAs
Drosophila
Buffers
Mammals
Genes
Lipolysis
Sirolimus
Adipocytes
Insulin
Amino Acids
psoralens
Mixed Function Oxygenases
cytochrome P-450
Metabolism
Cytochrome P-450 Enzyme System

A modified nodal scheme for the time-dependent, incompressible Navier-Stokes equations

Wang, F. & Uddin, R., May 1 2003, In : Journal of Computational Physics. 187, 1, p. 168-196 29 p.

Research output: Contribution to journalArticle

Navier-Stokes equation
Navier Stokes equations
Brick
Ordinary differential equations
cells

A mouse specific polymerase chain reaction (PCR) primer: Probe generation from somatic cell hybrids

Cox, R. D., Stubbs, L. J., Evans, T. & Lehrach, H., May 11 1991, In : Nucleic acids research. 19, 9, 1 p.

Research output: Contribution to journalArticle

Genetic Templates
Mice (computer peripherals)
Molecular Sequence Data
Molecular Probes
Polymerase Chain Reaction

An actin-dependent conformational change in myosin

Xiao, M., Reifenberger, J. G., Wells, A. L., Baldacchino, C., Chen, L. Q., Ge, P., Sweeney, H. L. & Selvin, P. R., May 1 2003, In : Nature Structural Biology. 10, 5, p. 402-408 7 p.

Research output: Contribution to journalArticle

Myosins
Actins
Cysteine
Light
Smooth Muscle Myosins

A natural antisense lncRNA controls breast cancer progression by promoting tumor suppressor gene mRNA stability

Jadaliha, M., Gholamalamdari, O., Tang, W., Zhang, Y., Petracovici, A., Hao, Q., Tariq, A., Kim, T. G., Holton, S. E., Singh, D. K., Li, X. L., Freier, S. M., Ambs, S., Bhargava, R., Lal, A., Prasanth, S. G., Ma, J. & Kannanganattu, P. K., Nov 2018, In : PLoS genetics. 14, 11, e1007802.

Research output: Contribution to journalArticle

Long Noncoding RNA
tumor suppressor genes
RNA Stability
Tumor Suppressor Genes
tumor

A neuronal ryanodine receptor mediates light-induced phase delays of the circadian clock

Ding, J. M., Buchanan, G. F., Tischkau, S. A., Chen, D., Kuriashkina, L., Faiman, L. E., Alster, J. M., McPherson, P. S., Campbell, K. P. & Gillette, M. L., Jul 23 1998, In : Nature. 394, 6691, p. 381-384 4 p.

Research output: Contribution to journalArticle

Ryanodine Receptor Calcium Release Channel
Circadian Clocks
Light
Glutamic Acid
Ionotropic Glutamate Receptors

A new mouse insertional mutation that causes sensorineural deafness and vestibular defects

Alagramam, K. N., Kwon, H. Y., Cacheiro, N. L. A., Stubbs, L. J., Wright, C. G., Erway, L. C. & Woychik, R. P., Aug 1 1999, In : Genetics. 152, 4, p. 1691-1699 9 p.

Research output: Contribution to journalArticle

Deafness
Mutation
Labyrinth Vestibule
Otolithic Membrane
Organ of Corti

A new regulatory function of the region proximal to the RGG box in the fragile X mental retardation protein

Blackwell, E. & Ceman, S., Sep 15 2011, In : Journal of cell science. 124, 18, p. 3060-3065 6 p.

Research output: Contribution to journalArticle

Fragile X Mental Retardation Protein
Nucleic Acid Regulatory Sequences
Exons
Protein Isoforms
Aptitude

An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages

Negi, S., Bolt, C. C., Zhang, H. & Stubbs, L. J., Feb 15 2019, In : Developmental Biology. 446, 2, p. 180-192 13 p.

Research output: Contribution to journalArticle

Cell Lineage
Chromatin
Prostate
Essential Genes
Ureter

An improved instrument for measuring time-resolved lanthanide emission and resonance energy transfer

Xiao, M. & Selvin, P. R., Oct 1999, In : Review of Scientific Instruments. 70, 10, p. 3877-3881 5 p.

Research output: Contribution to journalArticle

Rare earth elements
Energy transfer
Fluorescence
energy transfer
fluorescence