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2006

Isolation and characterization of a novel gene, xMADML, involved in Xenopus laevis eye development

Elkins, M. B. & Henry, J. J., Jul 1 2006, In : Developmental Dynamics. 235, 7, p. 1845-1857 13 p.

Research output: Contribution to journalArticle

Long-Range Directional Movement of an Interphase Chromosome Site

Chuang, C. H., Carpenter, A. E., Fuchsova, B., Johnson, T., de Lanerolle, P. & Belmont, A. S., Apr 18 2006, In : Current Biology. 16, 8, p. 825-831 7 p.

Research output: Contribution to journalArticle

Mass spectrometric characterization of human histone H3: A bird's eye view

Thomas, C. E., Kelleher, N. L. & Mizzen, C. A., Feb 2006, In : Journal of Proteome Research. 5, 2, p. 240-247 8 p.

Research output: Contribution to journalArticle

Maximum likelihood estimation of molecular motor kinetics from staircase dwell-time sequences

Milescu, L. S., Yildiz, A., Selvin, P. R. & Sachs, F., 2006, In : Biophysical journal. 91, 4, p. 1156-1168 13 p.

Research output: Contribution to journalArticle

Mediation of pyrethroid insecticide toxicity to honey bees (Hymenoptera: Apidae) by cytochrome P450 monooxygenases

Johnson, R. M., Wen, Z., Schuler, M. A. & Berenbaum, M. R., Aug 2006, In : Journal of economic entomology. 99, 4, p. 1046-1050 5 p.

Research output: Contribution to journalArticle

Modifications of H3 and H4 during chromatin replication, nucleosome assembly, and histone exchange

Benson, L. J., Gu, Y., Yakovleva, T., Tong, K., Barrows, C., Strack, C. L., Cook, R. G., Mizzen, C. A. & Annunziato, A. T., Apr 7 2006, In : Journal of Biological Chemistry. 281, 14, p. 9287-9296 10 p.

Research output: Contribution to journalArticle

Neuronal leucine-rich repeat 6 (XlNLRR-6) is required for late lens and retina development in Xenopus laevis

Wolfe, A. D. & Henry, J. J., Apr 2006, In : Developmental Dynamics. 235, 4, p. 1027-1041 15 p.

Research output: Contribution to journalArticle

PIAS1 confers DNA-binding specificity on the Msx1 homeoprotein

Lee, H., Quinn, J. C., Prasanth, K. V., Swiss, V. A., Economides, K. D., Camacho, M. M., Spector, D. L. & Abate-Shen, C., Apr 1 2006, In : Genes and Development. 20, 7, p. 784-794 11 p.

Research output: Contribution to journalArticle

Polarization effect on position accuracy of fluorophore localization

Enderlein, J., Toprak, E. & Selvin, P. R., Jan 1 2006, In : Optics Express. 14, 18, p. 8111-8120 10 p.

Research output: Contribution to journalArticle

Precise characterization of human histones in the H2A gene family by top down mass spectrometry

Boyne, M. T., Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Feb 2006, In : Journal of Proteome Research. 5, 2, p. 248-253 6 p.

Research output: Contribution to journalArticle

Quantitative analysis of modified proteins and their positional isomers by tandem mass spectrometry: Human histone H4

Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Jul 1 2006, In : Analytical chemistry. 78, 13, p. 4271-4280 10 p.

Research output: Contribution to journalArticle

Rapid, diffusional shuttling of poly(A) RNA between nuclear speckles and the nucleoplasm

Politz, J. C. R., Tuft, R. A., Prasanth, K. V., Baudendistel, N., Fogarty, K. E., Lifshitz, L. M., Langowski, J., Spector, D. L. & Pederson, T., Mar 2006, In : Molecular biology of the cell. 17, 3, p. 1239-1249 11 p.

Research output: Contribution to journalArticle

Rapid actin monomer-insensitive depolymerization of Listeria actin comet tails by cofilin, coronin, and Aip1

Brieher, W. M., Hao, Y. K., Ballif, B. A. & Mitchison, T. J., Oct 23 2006, In : Journal of Cell Biology. 175, 2, p. 315-324 10 p.

Research output: Contribution to journalArticle

Remarkable substrate-specificity of CYP6AB3 in Depressaria pastinacella, a highly specialized caterpillar

Mao, W., Rupasinghe, S., Zangerl, A. R., Schuler, M. A. & Berenbaum, M. R., Apr 1 2006, In : Insect Molecular Biology. 15, 2, p. 169-179 11 p.

Research output: Contribution to journalArticle

The cytochrome P450 gene family CYP157 does not contain EXXR in the K-helix reducing the absolute conserved P450 residues to a single cysteine

Rupasinghe, S., Schuler, M. A., Kagawa, N., Yuan, H., Lei, L., Zhao, B., Kelly, S. L., Waterman, M. R. & Lamb, D. C., Nov 27 2006, In : FEBS Letters. 580, 27, p. 6338-6342 5 p.

Research output: Contribution to journalArticle

Toxicity of aflatoxin B1 to Helicoverpa zea and bioactivation by cytochrome P450 monooxygenases

Zeng, R. S. L., Niu, G., Wen, Z., Schuler, M. A. & Berenbaum, M. R., 2006, In : Journal of Chemical Ecology. 32, 7, p. 1459-1471 13 p.

Research output: Contribution to journalArticle

Truncated HP1 lacking a functional chromodomain induces heterochromatinization upon in vivo targeting

Brink, M. C., Van Der Velden, Y., De Leeuw, W., Mateos-Langerak, J., Belmont, A. S., Van Driel, R. & Verschure, P. J., Jan 1 2006, In : Histochemistry and Cell Biology. 125, 1-2, p. 53-61 9 p.

Research output: Contribution to journalArticle

2005

A retinoic acid binding cytochrome P450: CYP120A1 from Synechocystis sp. PCC 6803

Ke, N., Baudry, J., Makris, T. M., Schuler, M. A. & Sligar, S. G., Apr 1 2005, In : Archives of Biochemistry and Biophysics. 436, 1, p. 110-120 11 p.

Research output: Contribution to journalArticle

Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome

Thimmapuram, J., Duan, H., Liu, L. & Schuler, M. A., Feb 2005, In : RNA. 11, 2, p. 128-138 11 p.

Research output: Contribution to journalArticle

Cell Biology: Kinesin and dynein move a peroxisome in vivo: A tug-of-war or coordinated movement?

Kural, C., Kim, H., Syed, S., Goshima, G., Gelfand, V. I. & Selvin, P. R., Jun 3 2005, In : Science. 308, 5727, p. 1469-1472 4 p.

Research output: Contribution to journalArticle

Chromatin dynamics in interphase cells revealed by tracking in a two-photon excitation microscope

Levi, V., Ruan, Q. Q., Plutz, M., Belmont, A. S. & Gratton, E., Dec 2005, In : Biophysical journal. 89, 6, p. 4275-4285 11 p.

Research output: Contribution to journalArticle

Common effects of acidic activators on large-scale chromatin structure and transcription

Carpenter, A. E., Memedula, S., Plutz, M. J. & Belmont, A. S., Feb 2005, In : Molecular and cellular biology. 25, 3, p. 958-968 11 p.

Research output: Contribution to journalArticle

Differential expression and evolution of the arabidopsis CYP86A subfamily

Duan, H. & Schuler, M. A., 2005, In : Plant physiology. 137, 3, p. 1067-1081 15 p.

Research output: Contribution to journalArticle

Evolution and functional classification of vertebrate gene deserts

Ovcharenko, I., Loots, G. G., Nobrega, M. A., Hardison, R. C., Miller, W. & Stubbs, L., Jan 2005, In : Genome Research. 15, 1, p. 137-145 9 p.

Research output: Contribution to journalArticle

Fluorescence imaging with one nanometer accuracy: Application to molecular motors

Yildiz, A. & Selvin, P. R., Jul 1 2005, In : Accounts of chemical research. 38, 7, p. 574-582 9 p.

Research output: Contribution to journalArticle

Interhead distance measurements in myosin VI via SHRImP support a simplified hand-over-hand model

Balci, H., Ha, T., Sweeney, H. L. & Selvin, P. R., Jul 2005, In : Biophysical journal. 89, 1, p. 413-417 5 p.

Research output: Contribution to journalArticle

In vivo HP1 targeting causes large-scale chromatin condensation and enhanced histone lysine methylation

Verschure, P. J., Van Der Kraan, I., De Leeuw, W., Van Der Vlag, J., Carpenter, A. E., Belmont, A. S. & Van Driel, R., Jun 2005, In : Molecular and cellular biology. 25, 11, p. 4552-4564 13 p.

Research output: Contribution to journalArticle

Mammalian target of rapamycin (mTOR) signaling is required for a late-stage fusion process during skeletal myotube maturation

Park, I. H. & Chen, J., Sep 9 2005, In : Journal of Biological Chemistry. 280, 36, p. 32009-32017 9 p.

Research output: Contribution to journalArticle

Modified nodal integral method for the three-dimensional, time-dependent, incompressible Navier-Stokes equations

Wang, F. & Rizwan-Uddin, Jan 2005, In : Nuclear Science and Engineering. 149, 1, p. 107-114 8 p.

Research output: Contribution to journalArticle

Molecular motors one at a time: FIONA to the rescue

Kural, C., Balci, H. & Selvin, P. R., Nov 30 2005, In : Journal of Physics Condensed Matter. 17, 47, p. S3979-S3995

Research output: Contribution to journalArticle

Mulan: Multiple-sequence local alignment and visualization for studying function and evolution

Ovcharenko, I., Loots, G. G., Giardine, B. M., Hou, M., Ma, J., Hardison, R. C., Stubbs, L. & Miller, W., Jan 2005, In : Genome Research. 15, 1, p. 184-194 11 p.

Research output: Contribution to journalArticle

Neural and eye-specific defects associated with loss of the Imitation Switch (ISWI) chromatin remodeler in Xenopus laevis

Dirscherl, S. S., Henry, J. J. & Krebs, J. E., Nov 1 2005, In : Mechanisms of Development. 122, 11, p. 1157-1170 14 p.

Research output: Contribution to journalArticle

Neutrophil microtubules suppress polarity and enhance directional migration

Xu, J., Wang, F., Van Keymeulen, A., Rentel, M. & Bourne, H. R., May 10 2005, In : Proceedings of the National Academy of Sciences of the United States of America. 102, 19, p. 6884-6889 6 p.

Research output: Contribution to journalArticle

New light on an old paradox: Site-dependent effects of carbachol on circadian rhythms

Buchanan, G. F. & Gillette, M. U., Jun 2005, In : Experimental Neurology. 193, 2, p. 489-496 8 p.

Research output: Contribution to journalArticle

Oligodeoxynucleotide methods for analyzing the circadian clock in the suprachiasmatic nucleus

Tischkau, S. A. & Gillette, M. U., Jan 1 2005, In : Methods in enzymology. 393, p. 593-610 18 p., 31.

Research output: Contribution to journalArticle

Regulation of an insect cytochrome P450 monooxygenase gene (CYP6B1) by aryl hydrocarbon and xanthotoxin response cascades

Brown, R. P., McDonnell, C. M., Berenbaum, M. R. & Schuler, M. A., Sep 26 2005, In : Gene. 358, 1-2, p. 39-52 14 p.

Research output: Contribution to journalArticle

Skeletal myocyte hypertrophy requires mTOR kinase activity and S6K1

Park, I. H., Erbay, E., Nuzzi, P. & Chen, J., Sep 10 2005, In : Experimental Cell Research. 309, 1, p. 211-219 9 p.

Research output: Contribution to journalArticle

Small vertical movement of a K+ channel voltage sensor measured with luminescence energy transfer

Posson, D. J., Ge, P., Miller, C., Bezanilla, F. & Selvin, P. R., Aug 11 2005, In : Nature. 436, 7052, p. 848-851 4 p.

Research output: Contribution to journalArticle

Step-size is determined by neck length in myosin V

Sakamoto, T., Yildez, A., Selvin, P. R. & Sellers, J. R., Dec 13 2005, In : Biochemistry. 44, 49, p. 16203-16210 8 p.

Research output: Contribution to journalArticle

Variations in CYP74B2 (Hydroperoxide Lyase) gene expression differentially affect hexenal signaling in the Columbia and Landsberg erecta ecotypes of arabidopsis

Duan, H., Huang, M. Y., Palacio, K. & Schuler, M. A., Dec 1 2005, In : Plant physiology. 139, 3, p. 1529-1544 16 p.

Research output: Contribution to journalArticle

2004

Activation of mTOR signaling by novel fluoromethylene phosphonate analogues of phosphatidic acid

Xu, Y., Fang, Y., Chen, J. & Prestwich, G. D., Mar 22 2004, In : Bioorganic and Medicinal Chemistry Letters. 14, 6, p. 1461-1464 4 p.

Research output: Contribution to journalArticle

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Wong, G. K. S., Liu, B., Wang, J., Zhang, Y., Yang, X., Zhang, Z., Meng, Q., Zhou, J., Li, D., Zhang, J., Ni, P., Li, S., Ran, L., Li, H., Zhang, J., Li, R., Li, S., Zheng, H., Lin, W., Li, G. & 94 others, Wang, X., Zhao, W., Li, J., Ye, C., Dai, M., Ruan, J., Zhou, Y., Li, Y., He, X., Zhang, Y., Wang, J., Huang, X., Tong, W., Chen, J., Ye, J., Chen, C., Wei, N., Li, G., Dong, L., Lan, F., Sun, Y., Zhang, Z., Yang, Z., Yu, Y., Huang, Y., He, D., Xi, Y., Wei, D., Qi, Q., Li, W., Shi, J., Wang, M., Xie, F., Wang, J., Zhang, X., Wang, P., Zhao, Y., Li, N., Yang, N., Dong, W., Hu, S., Zeng, C., Zheng, W., Hao, B., Hillier, L. D. W., Yang, S. P., Warren, W. C., Wilson, R. K., Brandström, M., Ellegren, H., Crooijmans, R. P. M. A., van der Poel, J. J., Bovenhuis, H., Groenen, M. A. M., Ovcharenko, I., Gordon, L., Stubbs, L., Lucas, S., Glavina, T., Aerts, A., Kaiser, P., Rothwell, L., Young, J. R., Rogers, S., Walker, B. A., van Hateren, A., Kaufman, J., Bumstead, N., Lamont, S. J., Zhou, H., Hocking, P. M., Morrice, D., de Koning, D. J., Law, A., Bartley, N., Burt, D. W., Hunt, H., Cheng, H. H., Gunnarsson, U., Wahlberg, P., Andersson, L., Kindlund, E., Tammi, M. T., Andersson, B., Webber, C., Ponting, C. P., Overton, I. M., Boardman, P. E., Tang, H., Hubbard, S. J., Wilson, S. A., Yu, J., Wang, J. & Yang, H. M., Dec 9 2004, In : Nature. 432, 7018, p. 717-722 6 p.

Research output: Contribution to journalArticle

Automated Microscopy Identifies Estrogen Receptor Subdomains with Large-Scale Chromatin Structure Unfolding Activity

Carpenter, A. E., Ashouri, A. & Belmont, A. S., Apr 2004, In : Cytometry Part A. 58, 2, p. 157-166 10 p.

Research output: Contribution to journalArticle

Biochemical and genetic interaction between the fragile X mental retardation protein 3nd the microRNA pathway

Jin, P., Zarnescu, D. C., Ceman, S., Nakamoto, M., Mowrey, J., Jongens, T. A., Nelson, D. L., Moses, K. & Warren, S. T., Feb 1 2004, In : Nature Neuroscience. 7, 2, p. 113-117 5 p.

Research output: Contribution to journalArticle

Carbostyril derivatives as antenna molecules for luminescent lanthanide chelates

Ge, P. & Selvin, P. R., Sep 2004, In : Bioconjugate Chemistry. 15, 5, p. 1088-1094 7 p.

Research output: Contribution to journalArticle

Characterization and evolution of furanocoumarin-inducible cytochrome P450s in the parsnip webworm, Depressaria pastinacella

Li, W., Zangerl, A. R., Schuler, M. A. & Berenbaum, M. R., Dec 2004, In : Insect Molecular Biology. 13, 6, p. 603-613 11 p.

Research output: Contribution to journalArticle

Comparative genomics of rice and arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot

Nelson, D. R., Schuler, M. A., Paquette, S. M., Werck-Reichhart, D. & Bak, S., Jun 2004, In : Plant physiology. 135, 2, p. 756-772 17 p.

Research output: Contribution to journalArticle