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2007

Bound attractant at the leading vs. the trailing edge determines chemotactic prowess

Herzmark, P., Campbell, K., Wang, F., Wong, K., El-Samad, H., Groisman, A. & Bourne, H. R., Aug 14 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 33, p. 13349-13354 6 p.

Research output: Contribution to journalArticle

Caspase-11 regulates cell migration by promoting Aip1-Cofilin-mediated actin depolymerization

Li, J., Brieher, W. M., Scimone, M. L., Kang, S. J., Zhu, H., Yin, H., von Andrian, U. H., Mitchison, T. & Yuan, J., Mar 2007, In : Nature Cell Biology. 9, 3, p. 276-286 11 p.

Research output: Contribution to journalArticle

Characterization of neurohistone variants and post-translational modifications by electron capture dissociation mass spectrometry

Garcia, B. A., Siuti, N., Thomas, C. E., Mizzen, C. A. & Kelleher, N. L., Jan 1 2007, In : International Journal of Mass Spectrometry. 259, 1-3, p. 184-196 13 p.

Research output: Contribution to journalArticle

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

Gordon, L., Yang, S., Tran-Gyamfi, M., Baggott, D., Christensen, M., Hamilton, A., Crooijmans, R., Groenen, M., Lucas, S., Ovcharenko, I. & Stubbs, L., Nov 2007, In : Genome Research. 17, 11, p. 1603-1613 11 p.

Research output: Contribution to journalArticle

Determination of haplotypes from single DNA molecules: A method for single-molecule barcoding

Xiao, M., Gordon, M. P., Phong, A., Ha, C., Chan, T. F., Cai, D., Selvin, P. R. & Kwok, P. Y., Sep 1 2007, In : Human mutation. 28, 9, p. 913-921 9 p.

Research output: Contribution to journalArticle

Diversities and similarities in P450 systems: An introduction

Schuler, M. A. & Sligar, S. G., 2007, In : Metal Ions in Life Sciences. 3, p. 1-26 26 p.

Research output: Contribution to journalArticle

FMRP phosphorylation reveals an immediate-early signaling pathway triggered by group I mGluR and mediated by PP2A

Narayanan, U., Nalavadi, V., Nakamoto, M., Pallas, D. C., Ceman, S., Bassell, G. J. & Warren, S. T., Dec 26 2007, In : Journal of Neuroscience. 27, 52, p. 14349-14357 9 p.

Research output: Contribution to journalArticle

Global assessment of combinatorial post-translational modification of core histones in yeast using contemporary mass spectrometry: LYS4 trimethylation correlates with degree of acetylation on the same H3 tail

Jiang, L., Smith, J. N., Anderson, S. L., Ma, P., Mizzen, C. A. & Kelleher, N. L., Sep 21 2007, In : Journal of Biological Chemistry. 282, 38, p. 27923-27934 12 p.

Research output: Contribution to journalArticle

Helicoverpa zea CYP6B8 and CYP321A1: Different molecular solutions to the problem of metabolizing plant toxins and insecticides

Rupasinghe, S. G., Wen, Z., Chiu, T. L. & Schuler, M. A., Dec 1 2007, In : Protein Engineering, Design and Selection. 20, 12, p. 615-624 10 p.

Research output: Contribution to journalArticle

High-pressure treatment of polytene chromosomes improves structural resolution

Novikov, D. V., Kireev, I. & Belmont, A. S., Jun 1 2007, In : Nature Methods. 4, 6, p. 483-485 3 p.

Research output: Contribution to journalArticle

High-resolution fate map of the snail Crepidula fornicata: The origins of ciliary bands, nervous system, and muscular elements

Hejnol, A., Martindale, M. Q. & Henry, J. Q., May 1 2007, In : Developmental Biology. 305, 1, p. 63-76 14 p.

Research output: Contribution to journalArticle

High-yield expression and purification of isotopically labeled cytochrome P450 monooxygenases for solid-state NMR spectroscopy

Rupasinghe, S. G., Duan, H., Frericks Schmidt, H. L., Berthold, D. A., Rienstra, C. M. & Schuler, M. A., Dec 2007, In : Biochimica et Biophysica Acta - Biomembranes. 1768, 12, p. 3061-3070 10 p.

Research output: Contribution to journalArticle

Homology of ciliary bands in Spiralian Trochophores

Henry, J. Q., Hejnol, A., Perry, K. J. & Martindale, M. Q., Dec 2007, In : Integrative and comparative biology. 47, 6, p. 865-871 7 p.

Research output: Contribution to journalArticle

How myosin VI coordinates its heads during processive movement

Sweeney, H. L., Park, H., Zong, A. B., Yang, Z., Selvin, P. R. & Rosenfeld, S. S., Jun 6 2007, In : EMBO Journal. 26, 11, p. 2682-2692 11 p.

Research output: Contribution to journalArticle

Isolation and identification of brain tumor stem cells from human brain neuroepithelial tumors

Fang, J. S., Deng, Y. W., Li, M. C., Chen, F. H., Wang, Y. J., Lu, M., Fang, F., Wu, J., Yang, Z. Y., Zhou, X. Y., Wang, F. & Chen, C., Jan 30 2007, In : National Medical Journal of China. 87, 5, p. 298-303 6 p.

Research output: Contribution to journalArticle

Microfluidic devices for culturing primary mammalian neurons at low densities

Millet, L. J., Stewart, M. E., Sweedler, J. V., Nuzzo, R. G. & Gillette, M. U., Jan 1 2007, In : Lab on a chip. 7, 8, p. 987-994 8 p.

Research output: Contribution to journalArticle

Microtubule binding by dynactin is required for microtubule organization but not cargo transport

Kim, H., Ling, S. C., Rogers, G. C., Kural, C., Selvin, P. R., Rogers, S. L. & Gelfand, V. I., Feb 26 2007, In : Journal of Cell Biology. 176, 5, p. 641-651 11 p.

Research output: Contribution to journalArticle

Mild performic acid oxidation enhances chromatographic and top down mass spectrometric analyses of histones

Pesavento, J. J., Garcia, B. A., Streeky, J. A., Kelleher, N. L. & Mizzen, C. A., Sep 2007, In : Molecular and Cellular Proteomics. 6, 9, p. 1510-1526 17 p.

Research output: Contribution to journalArticle

Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana

Rupasinghe, S. G., Duan, H. & Schuler, M. A., Jul 1 2007, In : Proteins: Structure, Function and Genetics. 68, 1, p. 279-293 15 p.

Research output: Contribution to journalArticle

Myrosinase in horseradish (Armoracia rusticana) root: Isolation of a full-length cDNA and its heterologous expression in Spodoptera frugiperda insect cells

Li, X., Wen, Z., Bohnert, H. J., Schuler, M. A. & Kushad, M. M., Jun 1 2007, In : Plant Science. 172, 6, p. 1095-1102 8 p.

Research output: Contribution to journalArticle

Pervasive combinatorial modification of histone H3 in human cells

Garcia, B. A., Pesavento, J. J., Mizzen, C. A. & Kelleher, N. L., Jun 1 2007, In : Nature Methods. 4, 6, p. 487-489 3 p.

Research output: Contribution to journalArticle

Rapid DNA mapping by fluorescent single molecule detection

Xiao, M., Phong, A., Ha, C., Chan, T. F., Cai, D., Leung, L., Wan, E., Kistler, A. L., DeRisi, J. L., Selvin, P. R. & Kwok, P. Y., Feb 2007, In : Nucleic acids research. 35, 3, e16.

Research output: Contribution to journalArticle

Splicing-independent recruitment of spliceosomal small nuclear RNPs to nascent RNA polymerase II transcripts

Patel, S. B., Novikova, N. & Bellini, M., Sep 10 2007, In : Journal of Cell Biology. 178, 6, p. 937-949 13 p.

Research output: Contribution to journalArticle

The cellular world according to Hsp90

Richter, K., Hendershot, L. M. & Freeman, B. C., Feb 1 2007, In : Nature Structural and Molecular Biology. 14, 2, p. 90-94 5 p.

Research output: Contribution to journalArticle

The p23 molecular chaperone promotes functional telomerase complexes through DNA dissociation

Toogun, O. A., Zeiger, W. & Freeman, B. C., Apr 3 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 14, p. 5765-5770 6 p.

Research output: Contribution to journalArticle

The tripartite motif of nuclear factor 7 is required for its association with transcriptional units

Beenders, B., Jones, P. L. & Bellini, M., Apr 2007, In : Molecular and cellular biology. 27, 7, p. 2615-2624 10 p.

Research output: Contribution to journalArticle

The unique insert at the end of the myosin VI motor is the sole determinant of directionality

Park, H., Li, A., Chen, L. Q., Houdusse, A., Selvin, P. R. & Sweeney, H. L., Jan 16 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 3, p. 778-783 6 p.

Research output: Contribution to journalArticle

Three-dimensional particle tracking via bifocal imaging

Toprak, E., Balci, H., Blehm, B. H. & Selvin, P. R., Jul 2007, In : Nano letters. 7, 7, p. 2043-2045 3 p.

Research output: Contribution to journalArticle

Tracking melanosomes inside a cell to study molecular motors and their interaction

Kural, C., Serpinskaya, A. S., Chou, Y. H., Goldman, R. D., Gelfand, V. I. & Selvin, P. R., Mar 27 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 13, p. 5378-5382 5 p.

Research output: Contribution to journalArticle

2006

Accessions of Solanum tuberosum ssp. andigena show differences in photosynthetic recovery after drought stress as reflected in gene expression profiles

Watkinson, J. I., Hendricks, L., Sioson, A. A., Vasquez-Robinet, C., Stromberg, V., Heath, L. S., Schuler, M., Bohnert, H. J., Bonierbale, M. & Grene, R., Dec 1 2006, In : Plant Science. 171, 6, p. 745-758 14 p.

Research output: Contribution to journalArticle

A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

Huntley, S., Baggott, D. M., Hamilton, A. T., Tran-Gyamfi, M., Yang, S., Kim, J., Gordon, L., Branscomb, E. & Stubbs, L., May 2006, In : Genome Research. 16, 5, p. 669-677 9 p.

Research output: Contribution to journalArticle

Adaptability of myosin V studied by simultaneous detection of position and orientation

Syed, S., Snyder, G. E., Franzini-Armstrong, C., Selvin, P. R. & Goldman, Y. E., May 3 2006, In : EMBO Journal. 25, 9, p. 1795-1803 9 p.

Research output: Contribution to journalArticle

A deficit of detoxification enzymes: Pesticide sensitivity and environmental response in the honeybee

Claudianos, C., Ranson, H., Johnson, R. M., Biswas, S., Schuler, M. A., Berenbaum, M. R., Feyereisen, R. & Oakeshott, J. G., Oct 1 2006, In : Insect Molecular Biology. 15, 5, p. 615-636 22 p.

Research output: Contribution to journalArticle

A nuclear transport signal in mammalian target of rapamycin is critical for its cytoplasmic signaling to S6 kinase

Bachmann, R. A., Kim, J. H., Wu, A. L., Park, I. H. & Chen, J., Mar 17 2006, In : Journal of Biological Chemistry. 281, 11, p. 7357-7363 7 p.

Research output: Contribution to journalArticle

Cell specification and the role of the polar lobe in the gastropod mollusc Crepidula fornicata

Henry, J. Q., Perry, K. J. & Martindale, M. Q., Sep 15 2006, In : Developmental Biology. 297, 2, p. 295-307 13 p.

Research output: Contribution to journalArticle

Class-dependent sequence alignment strategy improves the structural and functional modeling of P450s

Baudry, J., Rupasinghe, S. & Schuler, M. A., Aug 2006, In : Protein Engineering, Design and Selection. 19, 8, p. 345-353 9 p.

Research output: Contribution to journalArticle

Comprehensive phosphoprotein analysis of linker histone H1 from tetrahymena thermophila

Garcia, B. A., Joshi, S., Thomas, C. E., Chitta, R. K., Diaz, R. L., Busby, S. A., Andrews, P. C., Ogorzalek Loo, R. R., Shabanowitz, J., Kelleher, N. L., Mizzen, C. A., Allis, C. D. & Hunt, D. F., Sep 2006, In : Molecular and Cellular Proteomics. 5, 9, p. 1593-1609 17 p.

Research output: Contribution to journalArticle

CYP6B1 and CYP6B3 of the black swallowtail (Papilio polyxenes): Adaptive evolution through subfunctionalization

Wen, Z., Rupasinghe, S., Niu, G., Berenbaum, M. R. & Schuler, M. A., Dec 2006, In : Molecular biology and evolution. 23, 12, p. 2434-2443 10 p.

Research output: Contribution to journalArticle

Defocused orientation and position imaging (DOPI) of myosin V

Toprak, E., Enderlein, J., Syed, S., McKinney, S. A., Petschek, R. G., Ha, T., Goldman, Y. E. & Selvin, P. R., Apr 25 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 17, p. 6495-6499 5 p.

Research output: Contribution to journalArticle

Distance measurements reveal a common topology of prokaryotic voltage-gated ion channels in the lipid bilayer

Richardson, J., Blunck, R., Ge, P., Selvin, P. R., Bezanilla, F., Papazian, D. M. & Correa, A. M., Oct 24 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 43, p. 15865-15870 6 p.

Research output: Contribution to journalArticle

Electrical signals control wound healing through phosphatidylinositol-3-OH kinase-γ and PTEN

Zhao, M., Song, B., Pu, J., Wada, T., Reid, B., Tai, G., Wang, F., Guo, A., Walczysko, P., Gu, Y., Sasaki, T., Suzuki, A., Forrester, J. V., Bourne, H. R., Devreotes, P. N., McCaig, C. D. & Penninger, J. M., Jul 27 2006, In : Nature. 442, 7101, p. 457-460 4 p.

Research output: Contribution to journalArticle

Extracting dwell time sequences from processive molecular motor data

Milescu, L. S., Yildiz, A., Selvin, P. R. & Sachs, F., Nov 2006, In : Biophysical journal. 91, 9, p. 3135-3150 16 p.

Research output: Contribution to journalArticle

Full-length myosin VI dimerizes and moves processively along actin filaments upon monomer clustering

Park, H., Ramamurthy, B., Travaglia, M., Safer, D., Chen, L. Q., Franzini-Armstrong, C., Selvin, P. R. & Sweeney, H. L., Feb 3 2006, In : Molecular cell. 21, 3, p. 331-336 6 p.

Research output: Contribution to journalArticle

Functional CpG methylation system in a social insect

Wang, Y., Jorda, M., Jones, P. L., Maleszka, R., Ling, X., Robertson, H. M., Mizzen, C. A., Peinado, M. A. & Robinson, G. E., Oct 27 2006, In : Science. 314, 5799, p. 645-647 3 p.

Research output: Contribution to journalArticle

Gene-specific characterization of human histone H2B by electron capture dissociation

Siuti, N., Roth, M. J., Mizzen, C. A., Kelleher, N. L. & Pesavento, J. J., Feb 2006, In : Journal of Proteome Research. 5, 2, p. 233-239 7 p.

Research output: Contribution to journalArticle

Identification and characterization of the methyl arginines in the fragile X mental retardation protein Fmrp

Stetler, A., Winograd, C., Sayegh, J., Cheever, A., Patton, E., Zhang, X., Clarke, S. & Ceman, S., Jan 1 2006, In : Human molecular genetics. 15, 1, p. 87-96 10 p.

Research output: Contribution to journalArticle

Identification of clustered YY1 binding sites in imprinting control regions

Kim, J. D., Hinz, A. K., Bergmann, A., Huang, J. M., Ovcharenko, I., Stubbs, L. & Kim, J., 2006, In : Genome Research. 16, 7, p. 901-911 11 p.

Research output: Contribution to journalArticle

Insights into social insects from the genome of the honeybee Apis mellifera

Weinstock, G. M., Robinson, G. E., Gibbs, R. A., Worley, K. C., Evans, J. D., Maleszka, R., Robertson, H. M., Weaver, D. B., Beye, M., Bork, P., Elsik, C. G., Hartfelder, K., Hunt, G. J., Zdobnov, E. M., Amdam, G. V., Bitondi, M. M. G., Collins, A. M., Cristino, A. S., Lattorff, H. M. G., Lobo, C. H. & 204 others, Moritz, R. F. A., Nunes, F. M. F., Page, R. E., Simões, Z. L. P., Wheeler, D., Carninci, P., Fukuda, S., Hayashizaki, Y., Kai, C., Kawai, J., Sakazume, N., Sasaki, D., Tagami, M., Albert, S., Baggerman, G., Beggs, K. T., Bloch, G., Cazzamali, G., Cohen, M., Drapeau, M. D., Eisenhardt, D., Emore, C., Ewing, M. A., Fahrbach, S. E., Forêt, S., Grimmelikhuijzen, C. J. P., Hauser, F., Hummon, A. B., Huybrechts, J., Jones, A. K., Kadowaki, T., Kaplan, N., Kucharski, R., Leboulle, G., Linial, M., Littleton, J. T., Mercer, A. R., Richmond, T. A., Rodriguez-Zas, S. L., Rubin, E. B., Sattelle, D. B., Schlipalius, D., Schoofs, L., Shemesh, Y., Sweedler, J. V., Velarde, R., Verleyen, P., Vierstraete, E., Williamson, M. R., Ament, S. A., Brown, S. J., Corona, M., Dearden, P. K., Dunn, W. A., Elekonich, M. M., Fujiyuki, T., Gattermeier, I., Gempe, T., Hasselmann, M., Kage, E., Kamikouchi, A., Kubo, T., Kunieda, T., Lorenzen, M., Milshina, N. V., Morioka, M., Ohashi, K., Overbeek, R., Ross, C. A., Schioett, M., Shippy, T., Takeuchi, H., Toth, A. L., Willis, J. H., Wilson, M. J., Gordon, K. H. J., Letunic, I., Hackett, K., Peterson, J., Felsenfeld, A., Guyer, M., Solignac, M., Agarwala, R., Cornuet, J. M., Monnerot, M., Mougel, F., Reese, J. T., Vautrin, D., Gillespie, J. J., Cannone, J. J., Gutell, R. R., Johnston, J. S., Eisen, M. B., Iyer, V. N., Iyer, V., Kosarev, P., Mackey, A. J., Solovyev, V., Souvorov, A., Aronstein, K. A., Bilikova, K., Chen, Y. P., Clark, A. G., Decanini, L. I., Gelbart, W. M., Hetru, C., Hultmark, D., Imler, J. L., Jiang, H., Kanost, M., Kimura, K., Lazzaro, B. P., Lopez, D. L., Simuth, J., Thompson, G. J., Zou, Z., De Jong, P., Sodergren, E., Csurös, M., Milosavljevic, A., Osoegawa, K., Richards, S., Shu, C. L., Duret, L., Elhaik, E., Graur, D., Anzola, J. M., Campbell, K. S., Childs, K. L., Collinge, D., Crosby, M. A., Dickens, C. M., Grametes, L. S., Grozinger, C. M., Jones, P. L., Jorda, M., Ling, X., Matthews, B. B., Miller, J., Mizzen, C., Peinado, M. A., Reid, J. G., Russo, S. M., Schroeder, A. J., St. Pierre, S. E., Wang, Y., Zhou, P., Jiang, H., Kitts, P., Ruef, B., Venkatraman, A., Zhang, L., Aquino-Perez, G., Whitfield, C. W., Behura, S. K., Berlocher, S. H., Sheppard, W. S., Smith, D. R., Suarez, A. V., Tsutsui, N. D., Wei, X., Wheeler, D., Havlak, P., Li, B., Liu, Y., Jovilet, A., Lee, S., Nazareth, L. V., Pu, L. L., Thorn, R., Stolc, V., Newman, T., Samanta, M., Tongprasit, W. A., Claudianos, C., Berenbaum, M. R., Biswas, S., De Graaf, D. C., Feyereisen, R., Johnson, R. M., Oakeshott, J. G., Ranson, H., Schuler, M. A., Muzny, D., Chacko, J., Davis, C., Dinh, H., Gill, R., Hernandez, J., Hines, S., Hume, J., Jackson, L. R., Kovar, C., Lewis, L., Miner, G., Morgan, M., Nguyen, N., Okwuonu, G., Paul, H., Santibanez, J., Savery, G., Svatek, A., Villasana, D. & Wright, R., Oct 26 2006, In : Nature. 443, 7114, p. 931-949 19 p.

Research output: Contribution to journalArticle