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2011

Generation of melanocytes from induced pluripotent stem cells

Yang, R., Jiang, M., Kumar, S. M., Xu, T., Wang, F., Xiang, L. & Xu, X., Dec 2011, In : Journal of Investigative Dermatology. 131, 12, p. 2458-2466 9 p.

Research output: Contribution to journalArticle

Global Functional Map of the p23 Molecular Chaperone Reveals an Extensive Cellular Network

Echtenkamp, F. J., Zelin, E., Oxelmark, E., Woo, J. I., Andrews, B. J., Garabedian, M. & Freeman, B. C., Jul 22 2011, In : Molecular cell. 43, 2, p. 229-241 13 p.

Research output: Contribution to journalArticle

IGF-II is regulated by microRNA-125b in skeletal myogenesis

Ge, Y., Sun, Y. & Chen, J., Jan 10 2011, In : Journal of Cell Biology. 192, 1, p. 69-81 13 p.

Research output: Contribution to journalArticle

Label-free intracellular transport measured by spatial light interference microscopy

Wang, Z., Millet, L., Chan, V., Ding, H., Gillette, M. U., Bashir, R. & Popescu, G., Feb 1 2011, In : Journal of biomedical optics. 16, 2, 026019.

Research output: Contribution to journalArticle

Larval environmental stress alters Aedes aegypti competence for Sindbis virus

Muturi, E. J., Kim, C. H., Alto, B. W., Berenbaum, M. R. & Schuler, M. A., Aug 1 2011, In : Tropical Medicine and International Health. 16, 8, p. 955-964 10 p.

Research output: Contribution to journalArticle

Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation

Masui, O., Bonnet, I., Le Baccon, P., Brito, I., Pollex, T., Murphy, N., Hupé, P., Barillot, E., Belmont, A. S. & Heard, E., Apr 29 2011, In : Cell. 145, 3, p. 447-458 12 p.

Research output: Contribution to journalArticle

One-dimensional deterministic transport in neurons measured by dispersion-relation phase spectroscopy

Wang, R., Wang, Z., Leigh, J., Sobh, N., Millet, L., Gillette, M. U., Levine, A. J. & Popescu, G., Sep 21 2011, In : Journal of Physics Condensed Matter. 23, 37, 374107.

Research output: Contribution to journalArticle

Optical measurement of cycle-dependent cell growth

Mir, M., Wang, Z., Shen, Z., Bednarz, M., Bashir, R., Golding, I., Prasanth, S. G. & Popescu, G., Aug 9 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 32, p. 13124-13129 6 p.

Research output: Contribution to journalArticle

"ORCanization" On heterochromatin linking DNA replication initiation to chromatin organization

Chakraborty, A., Shen, Z. & Prasanth, S. G., Jun 2011, In : Epigenetics. 6, 6, p. 665-670 6 p.

Research output: Contribution to journalArticle

Phosphatidic acid activates mammalian target of rapamycin complex 1 (mTORC1) kinase by displacing FK506 binding protein 38 (FKBP38) and exerting an allosteric effect

Yoon, M. S., Sun, Y., Arauz, E., Jiang, Y. & Chen, J., Aug 26 2011, In : Journal of Biological Chemistry. 286, 34, p. 29568-29574 7 p.

Research output: Contribution to journalArticle

Probing cellular protein complexes using single-molecule pull-down

Jain, A., Liu, R., Ramani, B., Arauz, E., Ishitsuka, Y., Ragunathan, K., Park, J., Chen, J., Xiang, Y. K. & Ha, T., May 26 2011, In : Nature. 473, 7348, p. 484-488 5 p.

Research output: Contribution to journalArticle

Raptor and rheb negatively regulate skeletal myogenesis through suppression of insulin receptor substrate 1 (IRS1)

Ge, Y., Yoon, M. S. & Chen, J., Oct 14 2011, In : Journal of Biological Chemistry. 286, 41, p. 35675-35682 8 p.

Research output: Contribution to journalArticle

Ring-opening polymerization of γ-(4-vinylbenzyl)-l-glutamate N-carboxyanhydride for the synthesis of functional polypeptides

Lu, H., Bai, Y., Wang, J., Gabrielson, N. P., Wang, F., Lin, Y. & Cheng, J., Aug 23 2011, In : Macromolecules. 44, 16, p. 6237-6240 4 p.

Research output: Contribution to journalArticle

Role of mechanical factors in fate decisions of stem cells

Li, D., Zhou, J., Chowdhury, F., Cheng, J., Wang, N. & Wang, F., Mar 1 2011, In : Regenerative Medicine. 6, 2, p. 229-240 12 p.

Research output: Contribution to journalArticle

Single-molecule-based super-resolution images in the presence of multiple fluorophores

Simonson, P. D., Rothenberg, E. & Selvin, P. R., Nov 9 2011, In : Nano letters. 11, 11, p. 5090-5096 7 p.

Research output: Contribution to journalArticle

Single-virus tracking reveals a spatial receptor-dependent search mechanism

Rothenberg, E., Sepúlveda, L. A., Skinner, S. O., Zeng, L., Selvin, P. R. & Golding, I., Jan 1 2011, In : Biophysical journal. 100, 12, p. 2875-2882 8 p.

Research output: Contribution to journalArticle

Spatial light interference microscopy (SLIM)

Wang, Z., Millet, L., Mir, M., Ding, H., Unarunotai, S., Rogers, J., Gillette, M. U. & Popescu, G., Jan 17 2011, In : Optics Express. 19, 2, p. 1016-1026 11 p.

Research output: Contribution to journalArticle

Spatial light interference tomography (SLIT)

Wang, Z., Marks, D. L., Carney, P. S., Millet, L. J., Gillette, M. U., Mihi, A., Braun, P. V., Shen, Z., Prasanth, S. G. & Popescu, G., Oct 10 2011, In : Optics Express. 19, 21, p. 19907-19918 12 p.

Research output: Contribution to journalArticle

Stimulation of yeast telomerase activity by the ever shorter telomere 3 (Est3) subunit is dependent on direct interaction with the catalytic protein Est2

Talley, J. M., DeZwaan, D. C., Maness, L. D., Freeman, B. C. & Friedman, K. L., Jul 29 2011, In : Journal of Biological Chemistry. 286, 30, p. 26431-26439 9 p.

Research output: Contribution to journalArticle

Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase α

Sun, J., Yang, Y., Wan, K., Mao, N., Yu, T. Y., Lin, Y. C., Dezwaan, D. C., Freeman, B. C., Lin, J. J., Lue, N. F. & Lei, M., Feb 2011, In : Cell Research. 21, 2, p. 258-274 17 p.

Research output: Contribution to journalArticle

The non-receptor tyrosine kinase Lyn controls neutrophil adhesion by recruiting the CrkL-C3G complex and activating Rap1 at the leading edge

He, Y., Kapoor, A., Cook, S., Liu, S., Xiang, Y., Rao, C. V., Kenis, P. J. A. & Wang, F., Jul 1 2011, In : Journal of cell science. 124, 13, p. 2153-2164 12 p.

Research output: Contribution to journalArticle

The PI3K-Akt pathway inhibits senescence and promotes self-renewal of human skin-derived precursors in vitro

Liu, S., Liu, S., Wang, X., Zhou, J., Cao, Y., Wang, F. & Duan, E., Aug 1 2011, In : Aging Cell. 10, 4, p. 661-674 14 p.

Research output: Contribution to journalArticle

Two-photon 3D fiona of individual quantum dots in an aqueous environment

Zhang, R., Rothenberg, E., Fruhwirth, G., Simonson, P. D., Ye, F., Golding, I., Ng, T., Lopes, W. & Selvin, P. R., Oct 12 2011, In : Nano letters. 11, 10, p. 4074-4078 5 p.

Research output: Contribution to journalArticle

2010

Actin-driven cell dynamics probed by Fourier transform light scattering

Ding, H., Millet, L. J., Gillette, M. U. & Popescu, G., Aug 2 2010, In : Biomedical Optics Express. 1, 1, p. 260-267 8 p.

Research output: Contribution to journalArticle

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression

Bernard, D., Prasanth, K. V., Tripathi, V., Colasse, S., Nakamura, T., Xuan, Z., Zhang, M. Q., Sedel, F., Jourdren, L., Coulpier, F., Triller, A., Spector, D. L. & Bessis, A., Sep 2010, In : EMBO Journal. 29, 18, p. 3082-3093 12 p.

Research output: Contribution to journalArticle

A phosphatidylinositol 3-kinase/protein kinase B-independent activation of mammalian target of rapamycin signaling is sufficient to induce skeletal muscle hypertrophy

Goodman, C. A., Miu, M. H., Frey, J. W., Mabrey, D. M., Lincoln, H. C., Ge, Y., Chen, J. & Hornberger, T. A., Sep 15 2010, In : Molecular biology of the cell. 21, 18, p. 3258-3268 11 p.

Research output: Contribution to journalArticle

Arabidopsis CYP72C1 is an atypical cytochrome P450 that inactivates brassinosteroids

Thornton, L. E., Rupasinghe, S. G., Peng, H., Schuler, M. A. & Neff, M. M., Jul 29 2010, In : Plant Molecular Biology. 74, 1, p. 167-181 15 p.

Research output: Contribution to journalArticle

Arginines of the RGG box regulate FMRP association with polyribosomes and mRNA

Blackwell, E., Zhang, X. & Ceman, S., Jan 11 2010, In : Human molecular genetics. 19, 7, p. 1314-1323 10 p., ddq007.

Research output: Contribution to journalArticle

A WD-repeat protein stabilizes ORC binding to chromatin

Shen, Z., Sathyan, K. M., Geng, Y., Zheng, R., Chakraborty, A., Freeman, B., Wang, F., Prasanth, K. V. & Prasanth, S. G., Oct 8 2010, In : Molecular cell. 40, 1, p. 99-111 13 p.

Research output: Contribution to journalArticle

BAC TG-EMBED: One-step method for high-level, copy-number-dependent, position-independent transgene expression

Bian, Q. & Belmont, A. S., Apr 10 2010, In : Nucleic acids research. 38, 11, p. e127-e127 gkq178.

Research output: Contribution to journalArticle

Circadian integration of glutamatergic signals by little SAAS in novel suprachiasmatic circuits

Atkins, N., Mitchell, J. W., Romanova, E. V., Morgan, D. J., Cominski, T. P., Ecker, J. L., Pintar, J. E., Sweedler, J. V. & Gillette, M. U., Nov 1 2010, In : PloS one. 5, 9, p. 1-13 13 p., e12612.

Research output: Contribution to journalArticle

Counting bungarotoxin binding sites of nicotinic acetylcholine receptors in mammalian cells with high signal/noise ratios

Simonson, P. D., DeBerg, H. A., Ge, P., Alexander, J. K., Jeyifous, O., Green, W. N. & Selvin, P. R., Nov 17 2010, In : Biophysical journal. 99, 10, p. L81-L83

Research output: Contribution to journalArticle

Differential localization of mRNAs during early development in the mollusc, Crepidula fornicata

Henry, J. J., Perry, K. J., Fukui, L. & Alvi, N., Nov 1 2010, In : Integrative and comparative biology. 50, 5, p. 720-733 14 p.

Research output: Contribution to journalArticle

Direct cellular peptidomics of supraoptic magnocellular and hippocampal neurons in low-density cocultures

Millet, L. J., Bora, A., Sweedler, J. V. & Gillette, M. U., Jan 20 2010, In : ACS Chemical Neuroscience. 1, 1, p. 36-48 13 p.

Research output: Contribution to journalArticle

Dynamic plasticity of large-scale chromatin structure revealed by self-assembly of engineered chromosome regions

Sinclair, P., Bian, Q., Plutz, M., Heard, E. & Belmont, A. S., Sep 6 2010, In : Journal of Cell Biology. 190, 5, p. 761-776 16 p.

Research output: Contribution to journalArticle

Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry

Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 1 2010, In : Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.

Research output: Contribution to journalArticle

Estrogen fueled, nuclear kiss: Did it move for you?

Belmont, A. S., Jan 1 2010, In : Nucleus. 1, 5, 13051.

Research output: Contribution to journalArticle

Facioscapulohumeral muscular dystrophy region gene-1 (FRG-1) is an actin-bundling protein associated with muscle-attachment sites

Liu, Q., Jones, T. I., Tang, V. W., Brieher, W. M. & Jones, P. L., Apr 1 2010, In : Journal of cell science. 123, 7, p. 1116-1123 8 p.

Research output: Contribution to journalArticle

Formation of Salt Bridges Mediates Internal Dimerization of Myosin VI Medial Tail Domain

Kim, H. J., Hsin, J., Liu, Y., Selvin, P. R. & Schulten, K., Nov 10 2010, In : Structure. 18, 11, p. 1443-1449 7 p.

Research output: Contribution to journalArticle

Fragile X protein family member FXR1P is regulated by microRNAs

Cheever, A., Blackwell, E. & Ceman, S., Aug 1 2010, In : RNA. 16, 8, p. 1530-1539 10 p.

Research output: Contribution to journalArticle

Guiding neuron development with planar surface gradients of substrate cues deposited using microfluidic devices

Millet, L. J., Stewart, M. E., Nuzzo, R. G. & Gillette, M. U., 2010, In : Lab on a chip. 10, 12, p. 1525-1535 11 p.

Research output: Contribution to journalArticle

High-efficiency induction of neural conversion in human ESCs and human induced pluripotent stem cells with a single chemical inhibitor of transforming growth factor beta superfamily receptors

Zhou, J., Su, P., Li, D., Tsang, S., Duan, E. & Wang, F., Oct 1 2010, In : Stem Cells. 28, 10, p. 1741-1750 10 p.

Research output: Contribution to journalArticle

Histone H1 phosphorylation is associated with transcription by RNA polymerases I and II

Zheng, Y., John, S., Pesavento, J. J., Schultz-Norton, J. R., Schiltz, R. L., Baek, S., Nardulli, A. M., Hager, G. L., Kelleher, N. L. & Mizzen, C. A., May 3 2010, In : Journal of Cell Biology. 189, 3, p. 407-415 9 p.

Research output: Contribution to journalArticle

Hsp70 gene association with nuclear speckles is Hsp70 promoter specific

Hu, Y., Plutz, M. & Belmont, A. S., Nov 15 2010, In : Journal of Cell Biology. 191, 4, p. 711-719 9 p.

Research output: Contribution to journalArticle

Improved hidden Markov models for molecular motors, part 1: Basic theory

Müllner, F. E., Syed, S., Selvin, P. R. & Sigworth, F. J., Dec 1 2010, In : Biophysical journal. 99, 11, p. 3684-3695 12 p.

Research output: Contribution to journalArticle

Improved hidden Markov models for molecular motors, part 2: Extensions and application to experimental data

Syed, S., Müllner, F. E., Selvin, P. R. & Sigworth, F. J., Dec 1 2010, In : Biophysical journal. 99, 11, p. 3696-3703 8 p.

Research output: Contribution to journalArticle

Insights into interphase large-scale chromatin structure from analysis of engineered chromosome regions

Belmont, A. S., Hu, Y., Sinclair, P. B., Wu, W., Bian, Q. & Kireev, I., Dec 1 2010, In : Cold Spring Harbor symposia on quantitative biology. 75, p. 453-460 8 p.

Research output: Contribution to journalArticle

Integrated biochemical and mechanical signals regulate multifaceted human embryonic stem cell functions

Li, D., Zhou, J., Wang, L., Shin, M. E., Su, P., Lei, X., Kuang, H., Guo, W., Yang, H., Cheng, L., Tanaka, T. S., Leckband, D. E., Reynolds, A. B., Duan, E. & Wang, F., Nov 1 2010, In : Journal of Cell Biology. 191, 3, p. 631-644 14 p.

Research output: Contribution to journalArticle

Lineage-specific transcription factors and the evolution of gene regulatory networks

Nowick, K. & Stubbs, L., Jan 16 2010, In : Briefings in Functional Genomics and Proteomics. 9, 1, p. 65-78 14 p., elp056.

Research output: Contribution to journalArticle