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2013

Temporal patterning of Drosophila medulla neuroblasts controls neural fates

Li, X., Erclik, T., Bertet, C., Chen, Z., Voutev, R., Venkatesh, S., Morante, J., Celik, A. & Desplan, C., Jun 21 2013, In : Nature. 498, 7455, p. 456-462 7 p.

Research output: Contribution to journalArticle

XPLN is an endogenous inhibitor of mTORC2

Khanna, N., Fang, Y., Yoon, M. S. & Chen, J., Oct 1 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 40, p. 15979-15984 6 p.

Research output: Contribution to journalArticle

β-Globin cis-elements determine differential nuclear targeting through epigenetic modifications

Bian, Q., Khanna, N., Alvikas, J. & Belmont, A. S., Dec 9 2013, In : Journal of Cell Biology. 203, 5, p. 767-783 17 p.

Research output: Contribution to journalArticle

2012

Activity-dependent regulation of retinogeniculate signaling by metabotropic glutamate receptors

Govindaiah, G., Wang, T., Gillette, M. U. & Cox, C. L., Sep 12 2012, In : Journal of Neuroscience. 32, 37, p. 12820-12831 12 p.

Research output: Contribution to journalArticle

A gain-of-function polymorphism controlling complex traits and fitness in nature

Prasad, K. V. S. K., Song, B. H., Olson-Manning, C., Anderson, J. T., Lee, C. R., Schranz, M. E., Windsor, A. J., Clauss, M. J., Manzaneda, A. J., Naqvi, I., Reichelt, M., Gershenzon, J., Rupasinghe, S. G., Schuler, M. A. & Mitchell-Olds, T., Aug 31 2012, In : Science. 337, 6098, p. 1081-1084 4 p.

Research output: Contribution to journalArticle

Arginine methylation of RNA-binding proteins regulates cell function and differentiation

Blackwell, E. & Ceman, S., Mar 1 2012, In : Molecular reproduction and development. 79, 3, p. 163-175 13 p.

Research output: Contribution to journalArticle

Association of modified cytosines and the methylated DNA-binding protein MeCP2 with distinctive structural domains of lampbrush chromatin

Morgan, G. T., Jones, P. & Bellini, M., Dec 1 2012, In : Chromosome Research. 20, 8, p. 925-942 18 p.

Research output: Contribution to journalArticle

Biomimetic surface engineering of lanthanide-doped upconversion nanoparticles as versatile bioprobes

Li, L. L., Zhang, R., Yin, L., Zheng, K., Qin, W., Selvin, P. R. & Lu, Y., Jun 18 2012, In : Angewandte Chemie - International Edition. 51, 25, p. 6121-6125 5 p.

Research output: Contribution to journalArticle

Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons

Wang, T. A., Yu, Y. V., Govindaiah, G., Ye, X., Artinian, L., Coleman, T. P., Sweedler, J. V., Cox, C. L. & Gillette, M. U., Aug 17 2012, In : Science. 337, 6096, p. 839-842 4 p.

Research output: Contribution to journalArticle

Cleavage pattern and fate map of the mesentoblast, 4d, in the gastropod Crepidula: a hallmark of spiralian development

Lyons, D. C., Perry, K. J., Lesoway, M. P. & Henry, J. Q., Sep 19 2012, In : EvoDevo. 3, 1, 21.

Research output: Contribution to journalArticle

Direct detection of adenosine in undiluted serum using a luminescent aptamer sensor attached to a terbium complex

Li, L. L., Ge, P., Selvin, P. R. & Lu, Y., Sep 18 2012, In : Analytical chemistry. 84, 18, p. 7852-7856 5 p.

Research output: Contribution to journalArticle

Dynamic association of orca with prereplicative complex components regulates dna replication initiation

Shen, Z., Chakraborty, A., Jain, A., Giri, S., Ha, T., Prasanth, K. V. & Prasanth, S. G., Aug 1 2012, In : Molecular and cellular biology. 32, 15, p. 3107-3120 14 p.

Research output: Contribution to journalArticle

Ecologically appropriate xenobiotics induce cytochrome P450s in Apis Mellifera

Johnson, R. M., Mao, W., Pollock, H. S., Niu, G., Schuler, M. A. & Berenbaum, M. R., Feb 3 2012, In : PloS one. 7, 2, e31051.

Research output: Contribution to journalArticle

Evolutionary toxicogenomics: Diversification of the Cyp12d1 and Cyp12d3 genes in Drosophila species

McDonnell, C. M., King, D., Comeron, J. M., Li, H., Sun, W., Berenbaum, M. R., Schuler, M. A. & Pittendrigh, B. R., Jun 1 2012, In : Journal of Molecular Evolution. 74, 5-6, p. 281-296 16 p.

Research output: Contribution to journalArticle

Expanding the cellular molecular chaperone network through the ubiquitous cochaperones

Echtenkamp, F. J. & Freeman, B. C., Mar 1 2012, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1823, 3, p. 668-673 6 p.

Research output: Contribution to journalArticle

Glycerolipid signals alter mTOR complex 2 (mTORC2) to diminish insulin signaling

Zhang, C., Wendel, A. A., Keogh, M. R., Harris, T. E., Chen, J. & Coleman, R. A., Jan 31 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 5, p. 1667-1672 6 p.

Research output: Contribution to journalArticle

Hepatic Hdac3 promotes gluconeogenesis by repressing lipid synthesis and sequestration

Sun, Z., Miller, R. A., Patel, R. T., Chen, J., Dhir, R., Wang, H., Zhang, D., Graham, M. J., Unterman, T. G., Shulman, G. I., Sztalryd, C., Bennett, M. J., Ahima, R. S., Birnbaum, M. J. & Lazar, M. A., Jun 1 2012, In : Nature Medicine. 18, 6, p. 934-942 9 p.

Research output: Contribution to journalArticle

Identification of key regulatory pathways of myeloid differentiation using an mESC-based karyotypically normal cell model

Li, D., Yang, H., Nan, H., Liu, P., Pang, S., Zhao, Q., Karni, R., Kamps, M. P., Xu, Y., Zhou, J., Wiedmer, T., Sims, P. J. & Wang, F., Dec 6 2012, In : Blood. 120, 24, p. 4712-4719 8 p.

Research output: Contribution to journalArticle

Malat1 is not an essential component of nuclear speckles in mice

Nakagawa, S., Ip, J. Y., Shioi, G., Tripathi, V., Zong, X., Hirose, T. & Prasanth, K. V., Aug 1 2012, In : RNA. 18, 8, p. 1487-1499 13 p.

Research output: Contribution to journalArticle

Multicolor super-resolution DNA imaging for genetic analysis

Baday, M., Cravens, A., Hastie, A., Kim, H., Kudeki, D. E., Kwok, P. Y., Xiao, M. & Selvin, P. R., Jul 11 2012, In : Nano letters. 12, 7, p. 3861-3866 6 p.

Research output: Contribution to journalArticle

Orc2 protects ORCA from ubiquitin-mediated degradation

Shen, Z. & Prasanth, S. G., Oct 1 2012, In : Cell Cycle. 11, 19, p. 3578-3589 12 p.

Research output: Contribution to journalArticle

Over a century of neuron culture: From the hanging drop to microfluidic devices

Millet, L. J. & Gillette, M. U., Dec 1 2012, In : Yale Journal of Biology and Medicine. 85, 4, p. 501-521 21 p.

Research output: Contribution to journalArticle

Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes

Yin, P., Knolhoff, A. M., Rosenberg, H. J., Millet, L. J., Gillette, M. U. & Sweedler, J. V., Aug 3 2012, In : Journal of Proteome Research. 11, 8, p. 3965-3973 9 p.

Research output: Contribution to journalArticle

Reactive and bioactive cationic α-helical polypeptide template for nonviral gene delivery

Gabrielson, N. P., Lu, H., Yin, L., Li, D., Wang, F. & Cheng, J., Jan 27 2012, In : Angewandte Chemie - International Edition. 51, 5, p. 1143-1147 5 p.

Research output: Contribution to journalArticle

Replicating and transcribing on twisted roads of chromatin

Giri, S. & Prasanth, S. G., May 1 2012, In : Briefings in Functional Genomics. 11, 3, p. 188-204 17 p., elr047.

Research output: Contribution to journalArticle

SRSF1 regulates the assembly of pre-mRNA processing factors in nuclear speckles

Tripathi, V., Song, D. Y., Zong, X., Shevtsov, S. P., Hearn, S., Fu, X. D., Dundr, M. & Prasanth, K. V., Sep 15 2012, In : Molecular biology of the cell. 23, 18, p. 3694-3706 13 p.

Research output: Contribution to journalArticle

The natural product cucurbitacin e inhibits depolymerization of actin filaments

Sörensen, P. M., Iacob, R. E., Fritzsche, M., Engen, J. R., Brieher, W. M., Charras, G. & Eggert, U. S., Sep 21 2012, In : ACS chemical biology. 7, 9, p. 1502-1508 7 p.

Research output: Contribution to journalArticle

The p23 Molecular Chaperone and GCN5 Acetylase Jointly Modulate Protein-DNA Dynamics and Open Chromatin Status

Zelin, E., Zhang, Y., Toogun, O. A., Zhong, S. & Freeman, B. C., Nov 9 2012, In : Molecular cell. 48, 3, p. 459-470 12 p.

Research output: Contribution to journalArticle

The recruitment of the U5 snRNP to nascent transcripts requires internal loop 1 of U5 snRNA

Kim, R., Paschedag, J., Novikova, N. & Bellini, M., Dec 1 2012, In : Chromosome Research. 20, 8, p. 943-951 9 p.

Research output: Contribution to journalArticle

The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression

Ament, S. A., Wang, Y., Chen, C. C., Blatti, C. A., Hong, F., Liang, Z. S., Negre, N., White, K. P., Rodriguez-Zas, S. L., Mizzen, C. A., Sinha, S., Zhong, S. & Robinson, G. E., Mar 1 2012, In : PLoS genetics. 8, 3, e1002596.

Research output: Contribution to journalArticle

Using fixed fiduciary markers for stage drift correction

Lee, S. H., Baday, M., Tjioe, M., Simonson, P. D., Zhang, R., Cai, E. & Selvin, P. R., May 21 2012, In : Optics Express. 20, 11, p. 12177-12183 7 p.

Research output: Contribution to journalArticle

VITAL NMR: Using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy

Brothers, M. C., Nesbitt, A. E., Hallock, M. J., Rupasinghe, S. G., Tang, M., Harris, J., Baudry, J., Schuler, M. A. & Rienstra, C. M., Jan 1 2012, In : Journal of Biomolecular NMR. 52, 1, p. 41-56 16 p.

Research output: Contribution to journalArticle

Williams Syndrome Transcription Factor is critical for neural crest cell function in Xenopus laevis

Barnett, C., Yazgan, O., Kuo, H. C., Malakar, S., Thomas, T., Fitzgerald, A., Harbour, W., Henry, J. J. & Krebs, J. E., Sep 1 2012, In : Mechanisms of Development. 129, 9-12, p. 324-338 15 p.

Research output: Contribution to journalArticle

α-Actinin-4/FSGS1 is required for Arp2/3-dependent actin assembly at the adherens junction

Tang, V. W. & Brieher, W. M., Jan 1 2012, In : Journal of Cell Biology. 196, 1, p. 115-130 16 p.

Research output: Contribution to journalArticle

2011

3D microperiodic hydrogel scaffolds for robust neuronal cultures

Hanson Shepherd, J. N., Parker, S. T., Shepherd, R. F., Gillette, M. U., Lewis, J. A. & Nuzzo, R. G., Jan 7 2011, In : Advanced Functional Materials. 21, 1, p. 47-54 8 p.

Research output: Contribution to journalArticle

A BEN-domain-containing protein associates with heterochromatin and represses transcription

Sathyan, K. M., Shen, Z., Tripathi, V., Prasanth, K. V. & Prasanth, S. G., Sep 15 2011, In : Journal of cell science. 124, 18, p. 3149-3163 15 p.

Research output: Contribution to journalArticle

A cell-instructive hydrogel to regulate malignancy of 3D tumor spheroids with matrix rigidity

Liang, Y., Jeong, J., DeVolder, R. J., Cha, C., Wang, F., Tong, Y. W. & Kong, H., Dec 1 2011, In : Biomaterials. 32, 35, p. 9308-9315 8 p.

Research output: Contribution to journalArticle

A new regulatory function of the region proximal to the RGG box in the fragile X mental retardation protein

Blackwell, E. & Ceman, S., Sep 15 2011, In : Journal of cell science. 124, 18, p. 3060-3065 6 p.

Research output: Contribution to journalArticle

A substrate-specific cytochrome P450 monooxygenase, CYP6AB11, from the polyphagous navel orangeworm (Amyelois transitella)

Niu, G., Rupasinghe, S. G., Zangerl, A. R., Siegel, J. P., Schuler, M. A. & Berenbaum, M. R., Apr 1 2011, In : Insect Biochemistry and Molecular Biology. 41, 4, p. 244-253 10 p.

Research output: Contribution to journalArticle

Class III PI-3-kinase activates phospholipase D in an amino acid-sensing mTORC1 pathway

Yoon, M. S., Du, G., Backer, J. M., Frohman, M. A. & Chen, J., Oct 31 2011, In : Journal of Cell Biology. 195, 3, p. 435-447 13 p.

Research output: Contribution to journalArticle

Crystal structure of a phenol-coupling P450 monooxygenase involved in teicoplanin biosynthesis

Li, Z., Rupasinghe, S. G., Schuler, M. A. & Nair, S. K., Jun 1 2011, In : Proteins: Structure, Function and Bioinformatics. 79, 6, p. 1728-1738 11 p.

Research output: Contribution to journalArticle

Dispersion-relation phase spectroscopy of intracellular transport

Wang, R., Wang, Z., Millet, L., Gillette, M. U., Levine, A. J. & Popescu, G., Oct 10 2011, In : Optics Express. 19, 21, p. 20571-20579 9 p.

Research output: Contribution to journalArticle

Extension of a three-helix bundle domain of myosin VI and key role of calmodulins

Liu, Y., Hsin, J., Kim, H. J., Selvin, P. R. & Schulten, K., Jan 1 2011, In : Biophysical journal. 100, 12, p. 2964-2973 10 p.

Research output: Contribution to journalArticle

Facioscapulohumeral muscular dystrophy region gene 1 Is a dynamic RNA-associated and actin-bundling protein

Sun, C. Y. J., Van Koningsbruggen, S., Long, S. W., Straasheijm, K., Klooster, R., Jones, T. I., Bellini, M., Levesque, L., Brieher, W. M., Van Der Maarel, S. M. & Jones, P. L., Aug 12 2011, In : Journal of Molecular Biology. 411, 2, p. 397-416 20 p.

Research output: Contribution to journalArticle

FGF signaling is required for lens regeneration in Xenopus Laevis

Fukui, L. & Henry, J. J., Jan 1 2011, In : Biological Bulletin. 221, 1, p. 137-145 9 p.

Research output: Contribution to journalArticle

Function and evolution of C2H2 zinc finger arrays

Stubbs, L., Sun, Y. & Caetano-Anolles, D., Jan 1 2011, In : Sub-Cellular Biochemistry. 52, p. 75-94 20 p.

Research output: Contribution to journalArticle