Research Output

Filter
Article
2014

High-efficiency motor neuron differentiation from human pluripotent stem cells and the function of Islet-1

Qu, Q., Li, D., Louis, K. R., Li, X., Yang, H., Sun, Q., Crandall, S. R., Tsang, S., Zhou, J., Cox, C. L., Cheng, J. & Wang, F., Mar 13 2014, In : Nature communications. 5, 3449.

Research output: Contribution to journalArticle

HSP70 transgene directed motion to nuclear speckles facilitates heat shock activation

Khanna, N., Hu, Y. & Belmont, A. S., May 19 2014, In : Current Biology. 24, 10, p. 1138-1144 7 p.

Research output: Contribution to journalArticle

Ins and outs of spiralian gastrulation

Lyons, D. C. & Henry, J. Q., Jan 1 2014, In : International Journal of Developmental Biology. 58, 6-8, p. 413-428 16 p.

Research output: Contribution to journalArticle

Label-Free Characterization of Emerging Human Neuronal Networks

Mir, M., Kim, T., Majumder, A., Xiang, M., Wang, R., Liu, S. C., Gillette, M. U., Stice, S. & Popescu, G., Apr 1 2014, In : Scientific reports. 4, 4434.

Research output: Contribution to journalArticle

Lanthionine synthetase C-like protein 2 (LanCL2) is a novel regulator of Akt

Zeng, M., Van Der Donk, W. A. & Chen, J., Dec 1 2014, In : Molecular biology of the cell. 25, 24, p. 3954-3961 8 p.

Research output: Contribution to journalArticle

MicroRNA-146b promotes myogenic differentiation and modulates multiple gene targets in muscle cells

Khanna, N., Ge, Y. & Chen, J., Jun 23 2014, In : PloS one. 9, 6, e100657.

Research output: Contribution to journalArticle

Molecular chaperone-mediated nuclear protein dynamics

Echtenkamp, F. J. & Freeman, B. C., Jan 1 2014, In : Current Protein and Peptide Science. 15, 3, p. 216-224 9 p.

Research output: Contribution to journalArticle

MOV10 and FMRP Regulate AGO2 Association with MicroRNA Recognition Elements

Kenny, P. J., Zhou, H., Kim, M., Skariah, G., Khetani, R. S., Drnevich, J., Arcila, M. L., Kosik, K. S. & Ceman, S., Dec 11 2014, In : Cell Reports. 9, 5, p. 1729-1741 13 p.

Research output: Contribution to journalArticle

Neuromolecular responses to social challenge: Common mechanisms across mouse, stickleback fish, and honey bee

Rittschof, C. C., Bukhari, S. A., Sloofman, L. G., Troy, J. M., Caetano-Anollés, D., Cash-Ahmed, A., Kent, M., Lu, X., Sanogo, Y. O., Weisner, P. A., Zhang, H., Bell, A. M., Ma, J., Sinha, S., Robinson, G. E. & Stubbs, L., Dec 16 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 50, p. 17929-17934 6 p.

Research output: Contribution to journalArticle

Oscillatory behavior of neutrophils under opposing chemoattractant gradients supports a winner-take-all mechanism

Byrne, M. B., Kimura, Y., Kapoor, A., He, Y., Mattam, K. S., Hasan, K. M., Olson, L. N., Wang, F., Kenis, P. J. A. & Rao, C. V., Jan 21 2014, In : PloS one. 9, 1, e85726.

Research output: Contribution to journalArticle

PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity

Yoon, J. H., De, S., Srikantan, S., Abdelmohsen, K., Grammatikakis, I., Kim, J., Kim, K. M., Noh, J. H., White, E. J. F., Martindale, J. L., Yang, X., Kang, M. J., Wood, W. H., Noren Hooten, N., Evans, M. K., Becker, K. G., Tripathi, V., Prasanth, K. V., Wilson, G. M., Tuschl, T. & 3 others, Ingolia, N. T., Hafner, M. & Gorospe, M., Jan 1 2014, In : Nature communications. 5, 5248.

Research output: Contribution to journalArticle

Phosphorylation-dephosphorylation cycle of HP1á governs accurate mitotic progression

Chakraborty, A. & Prasanth, S. G., Jun 1 2014, In : Cell Cycle. 13, 11, p. 1663-1670 8 p.

Research output: Contribution to journalArticle

Prolonged in vivo imaging of Xenopus laevis

Hamilton, P. W. & Henry, J. J., Aug 2014, In : Developmental Dynamics. 243, 8, p. 1011-1019 9 p.

Research output: Contribution to journalArticle

Retinoic acid regulation by CYP26 in vertebrate lens regeneration

Thomas, A. G. & Henry, J. J., Feb 15 2014, In : Developmental Biology. 386, 2, p. 291-301 11 p.

Research output: Contribution to journalArticle

Single molecule FRET reveals pore size and opening mechanism of a mechano-sensitive ion channel

Wang, Y., Liu, Y., DeBerg, H. A., Nomura, T., Hoffman, M. T., Rohde, P. R., Schulten, K., Martinac, B. & Selvin, P. R., Feb 18 2014, In : eLife. 2014, 3, e01834.

Research output: Contribution to journalArticle

Single molecule FRET reveals pore size and opening mechanism of a mechano-sensitive ion channel

Wang, Y., Liu, Y., Deberg, H. A., Nomura, T., Hoffman, M. T. O., Rohde, P. R., Schulten, K., Martinac, B. & Selvin, P. R., Jan 1 2014, In : eLife. 3, p. e01834

Research output: Contribution to journalArticle

Small quantum dots conjugated to nanobodies as immunofluorescence probes for nanometric microscopy

Wang, Y., Cai, E., Rosenkranz, T., Ge, P., Teng, K. W., Lim, S. J., Smith, A. M., Chung, H. J., Sachs, F., Green, W. N., Gottlieb, P. & Selvin, P. R., Dec 17 2014, In : Bioconjugate Chemistry. 25, 12, p. 2205-2211 7 p.

Research output: Contribution to journalArticle

Spiralian model systems

Henry, J. Q., Jan 1 2014, In : International Journal of Developmental Biology. 58, 6-8, p. 389-401 13 p.

Research output: Contribution to journalArticle

Stable small quantum dots for synaptic receptor tracking on live neurons

Cai, E., Ge, P., Lee, S. H., Jeyifous, O., Wang, Y., Liu, Y., Wilson, K. M., Lim, S. J., Baird, M. A., Stone, J. E., Lee, K. Y., Davidson, M. W., Chung, H. J., Schulten, K., Smith, A. M., Green, W. N. & Selvin, P. R., Nov 10 2014, In : Angewandte Chemie - International Edition. 53, 46, p. 12484-12488 5 p.

Research output: Contribution to journalArticle

Stoichiometry and assembly of mTOR complexes revealed by single-molecule pulldown

Jain, A., Arauz, E., Aggarwal, V., Ikon, N., Chen, J. & Ha, T., Dec 16 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 50, p. 17833-17838 6 p.

Research output: Contribution to journalArticle

Temporal patterning of neuroblasts controls notch-mediated cell survival through regulation of hid or reaper

Bertet, C., Li, X., Erclik, T., Cavey, M., Wells, B. & Desplan, C., Aug 28 2014, In : Cell. 158, 5, p. 1173-1186 14 p.

Research output: Contribution to journalArticle

Toward intelligent synthetic neural circuits: Directing and accelerating neuron cell growth by self-rolled-up silicon nitride microtube array

Froeter, P., Huang, Y., Cangellaris, O. V., Huang, W., Dent, E. W., Gillette, M. U., Williams, J. C. & Li, X., Nov 25 2014, In : ACS Nano. 8, 11, p. 11108-11117 10 p.

Research output: Contribution to journalArticle

2013

3D super-resolution imaging with blinking quantum dots

Wang, Y., Fruhwirth, G., Cai, E., Ng, T. & Selvin, P. R., Nov 13 2013, In : Nano letters. 13, 11, p. 5233-5241 9 p.

Research output: Contribution to journalArticle

A reciprocal translocation dissects roles of Pax6 alternative promoters and upstream regulatory elements in the development of pancreas, brain, and eye

Elso, C., Lu, X., Weisner, P. A., Thompson, H. L., Skinner, A., Carver, E. & Stubbs, L., Sep 1 2013, In : Genesis. 51, 9, p. 630-646 17 p.

Research output: Contribution to journalArticle

Cationic, helical polypeptide-based gene delivery for IMR-90 fibroblasts and human embryonic stem cells

Yen, J., Zhang, Y., Gabrielson, N. P., Yin, L., Guan, L., Chaudhury, I., Lu, H., Wang, F. & Cheng, J., Jul 2013, In : Biomaterials Science. 1, 7, p. 719-727 9 p.

Research output: Contribution to journalArticle

Cytochrome P450 Genes from the Sacred Lotus Genome

Nelson, D. R. & Schuler, M. A., Sep 1 2013, In : Tropical Plant Biology. 6, 2-3, p. 138-151 14 p.

Research output: Contribution to journalArticle

Distinct amino acid-sensing mTOR pathways regulate skeletal myogenesis

Yoon, M. S. & Chen, J., Dec 1 2013, In : Molecular biology of the cell. 24, 23, p. 3754-3763 10 p.

Research output: Contribution to journalArticle

Duration of rapamycin treatment has differential effects on metabolism in mice

Fang, Y., Westbrook, R., Hill, C., Boparai, R. K., Arum, O., Spong, A., Wang, F., Javors, M. A., Chen, J., Sun, L. Y. & Bartke, A., Mar 5 2013, In : Cell Metabolism. 17, 3, p. 456-462 7 p.

Research output: Contribution to journalArticle

Flt3L is a novel regulator of skeletal myogenesis

Ge, Y., Waldemer, R. J., Nalluri, R., Nuzzi, P. D. & Chen, J., Sep 9 2013, In : Journal of cell science. 126, 15, p. 3370-3379 10 p.

Research output: Contribution to journalArticle

Gene expression profiling reveals the heterogeneous transcriptional activity of Oct3/4 and its possible interaction with Gli2 in mouse embryonic stem cells

Li, Y., Drnevich, J., Akraiko, T., Band, M., Li, D., Wang, F., Matoba, R. & Tanaka, T. S., Nov 1 2013, In : Genomics. 102, 5-6, p. 456-467 12 p.

Research output: Contribution to journalArticle

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In : Genome biology. 14, 5, R41.

Research output: Contribution to journalArticle

Gravity persistent signal 1 (GPS1) reveals novel cytochrome P450s involved in Gravitropism

Withers, J. C., Shipp, M. J., Rupasinghe, S. G., Sukumar, P., Schuler, M. A., Muday, G. K. & Wyatt, S. E., Jan 1 2013, In : American journal of botany. 100, 1, p. 183-193 11 p.

Research output: Contribution to journalArticle

Histone H4 deacetylation facilitates 53BP1 DNA damage signaling and double-strand break repair

Hsiao, K. Y. & Mizzen, C. A., Jun 1 2013, In : Journal of Molecular Cell Biology. 5, 3, p. 157-165 9 p.

Research output: Contribution to journalArticle

In vivo optical trapping indicates kinesin's stall force is reduced by dynein during intracellular transport

Blehm, B. H., Schroer, T. A., Trybus, K. M., Chemla, Y. R. & Selvin, P. R., Feb 26 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3381-3386 6 p.

Research output: Contribution to journalArticle

Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB

Tripathi, V., Shen, Z., Chakraborty, A., Giri, S., Freier, S. M., Wu, X., Zhang, Y., Gorospe, M., Prasanth, S. G., Lal, A. & Prasanth, K. V., Apr 15 2013, In : PLoS genetics. 9, 3, e1003368.

Research output: Contribution to journalArticle

Mammalian target of rapamycin and Rictor control neutrophil chemotaxis by regulating Rac/Cdc42 activity and the actin cytoskeleton

He, Y., Li, D., Cook, S. L., Yoon, M. S., Kapoor, A., Rao, C. V., Kenis, P. J. A., Chen, J. & Wang, F., Nov 1 2013, In : Molecular biology of the cell. 24, 21, p. 3369-3380 12 p.

Research output: Contribution to journalArticle

Mechanistic target of rapamycin controls homeostasis of adipogenesis

Yoon, M. S., Zhang, C., Sun, Y., Schoenherr, C. J. & Chen, J., Aug 1 2013, In : Journal of Lipid Research. 54, 8, p. 2166-2173 8 p.

Research output: Contribution to journalArticle

Motor domain phosphorylation modulates kinesin-1 transport

DeBerg, H. A., Blehm, B. H., Sheung, J., Thompson, A. R., Bookwalter, C. S., Torabi, S. F., Schroer, T. A., Berger, C. L., Lu, Y., Trybus, K. M. & Selvin, P. R., Nov 8 2013, In : Journal of Biological Chemistry. 288, 45, p. 32612-32621 10 p.

Research output: Contribution to journalArticle

N-cadherin regulates spatially polarized signals through distinct p120ctn and β-catenin-dependent signalling pathways

Ouyang, M., Lu, S., Kim, T., Chen, C. E., Seong, J., Leckband, D. E., Wang, F., Reynolds, A. B., Schwartz, M. A. & Wang, Y., Apr 10 2013, In : Nature communications. 4, 1589.

Research output: Contribution to journalArticle

Pin1 promotes histone H1 dephosphorylation and stabilizes its binding to chromatin

Raghuram, N., Strickfaden, H., McDonald, D., Williams, K., Fang, H., Mizzen, C., Hayes, J. J., Th'ng, J. & Hendzel, M. J., Oct 25 2013, In : Journal of Cell Biology. 203, 1, p. 57-71 15 p.

Research output: Contribution to journalArticle

Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus

Lee, J. E., Zamdborg, L., Southey, B. R., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Feb 1 2013, In : Journal of Proteome Research. 12, 2, p. 585-593 9 p.

Research output: Contribution to journalArticle

Reversal of gene dysregulation in cultured cytotrophoblasts reveals possible causes of preeclampsia

Zhou, Y., Gormley, M. J., Hunkapiller, N. M., Kapidzic, M., Stolyarov, Y., Feng, V., Nishida, M., Drake, P. M., Bianco, K., Wang, F., McMaster, M. T. & Fisher, S. J., Jul 1 2013, In : Journal of Clinical Investigation. 123, 7, p. 2862-2872 11 p.

Research output: Contribution to journalArticle

Rice P450 reductases differentially affect P450-mediated metabolism in bacterial expression systems

Park, S., Kim, Y. S., Rupasinghe, S. G., Schuler, M. A. & Back, K., Mar 1 2013, In : Bioprocess and Biosystems Engineering. 36, 3, p. 325-331 7 p.

Research output: Contribution to journalArticle

RNAi Screen Reveals Potentially Novel Roles of Cytokines in Myoblast Differentiation

Ge, Y., Waldemer, R. J., Nalluri, R., Nuzzi, P. D. & Chen, J., Jul 2 2013, In : PloS one. 8, 7, e68068.

Research output: Contribution to journalArticle

Signals from the Brainstem Sleep/Wake Centers Regulate Behavioral Timing via the Circadian Clock

Abbott, S. M., Arnold, J. M., Chang, Q., Miao, H., Ota, N., Cecala, C., Gold, P. E., Sweedler, J. V. & Gillette, M. U., Aug 12 2013, In : PloS one. 8, 8, e70481.

Research output: Contribution to journalArticle