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2018

RNA helicase Mov10 is essential for gastrulation and central nervous system development

Skariah, G., Perry, K. J., Drnevich, J., Henry, J. J. & Ceman, S., Apr 2018, In : Developmental Dynamics. 247, 4, p. 660-671 12 p.

Research output: Contribution to journalArticle

Stable and reproducible transgene expression independent of proliferative or differentiated state using BAC TG-EMBED

Chaturvedi, P., Zhao, B., Zimmerman, D. L. & Belmont, A. S., Aug 1 2018, In : Gene therapy. 25, 5, p. 376-391 16 p.

Research output: Contribution to journalArticle

Structural Contributions to Hydrodynamic Diameter for Quantum Dots Optimized for Live-Cell Single-Molecule Tracking

Sheung, J. Y., Ge, P., Lim, S. J., Lee, S. H., Smith, A. M. & Selvin, P. R., Aug 2 2018, In : Journal of Physical Chemistry C. 122, 30, p. 17406-17412 7 p.

Research output: Contribution to journalArticle

The actin filament bundling protein α-actinin-4 actually suppresses actin stress fibers by permitting actin turnover

Kemp, J. P. & Brieher, W. M., Jan 1 2018, In : Journal of Biological Chemistry. 293, 37, p. 14520-14533 14 p.

Research output: Contribution to journalArticle

Thermal nanoimprint lithography for drift correction in super-resolution fluorescence microscopy

Youn, Y., Ishitsuka, Y., Jin, C. & Selvin, P. R., Jan 22 2018, In : Optics Express. 26, 2, p. 1670-1680 11 p.

Research output: Contribution to journalArticle

2017

Active Antioxidizing Particles for On-Demand Pressure-Driven Molecular Release

Seo, Y., Leong, J., Teo, J. Y., Mitchell, J. W., Gillette, M. U., Han, B., Lee, J. & Kong, H., Oct 18 2017, In : ACS Applied Materials and Interfaces. 9, 41, p. 35642-35650 9 p.

Research output: Contribution to journalArticle

ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins

Anantharaman, A., Tripathi, V., Khan, A., Yoon, J. H., Singh, D. K., Gholamalamdari, O., Guang, S., Ohlson, J., Wahlstedt, H., Öhman, M., Jantsch, M. F., Conrad, N. K., Ma, J., Gorospe, M., Prasanth, S. G. & Prasanth, K. V., Apr 20 2017, In : Nucleic acids research. 45, 7, p. 4189-4201 13 p.

Research output: Contribution to journalArticle

Behavioral, transcriptomic and epigenetic responses to social challenge in honey bees

Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Cash-Ahmed, A. C., Seward, C. H., Sloofman, L., Chandrasekaran, S., Sinha, S., Stubbs, L. J. & Robinson, G. E., Jul 2017, In : Genes, Brain and Behavior. 16, 6, p. 579-591 13 p.

Research output: Contribution to journalArticle

Beyond the sea: Crepidula atrasolea as a spiralian model system

Henry, J. Q., Lesoway, M. P., Perry, K. J., Osborne, C. C., Shankland, M. & Lyons, D. C., Jan 1 2017, In : International Journal of Developmental Biology. 61, 8-9, p. 479-493 15 p.

Research output: Contribution to journalArticle

Cap-n-Collar promotes tissue regeneration by regulating ROS and JNK signaling in the drosophila melanogaster wing imaginal disc

Brock, A. R., Seto, M. & Smith-Bolton, R., Jul 2017, In : Genetics. 206, 3, p. 1505-1520 16 p.

Research output: Contribution to journalArticle

Combinatorial Discovery of Defined Substrates That Promote a Stem Cell State in Malignant Melanoma

Zhang, D., Lee, J., Sun, M. B., Pei, Y., Chu, J., Gillette, M. U., Fan, T. M. & Kilian, K. A., May 24 2017, In : ACS Central Science. 3, 5, p. 381-393 13 p.

Research output: Contribution to journalArticle

Comparative analysis of weighted gene coexpression networks in human and mouse

Eidsaa, M., Stubbs, L. & Almaas, E., Nov 2017, In : PloS one. 12, 11, e0187611.

Research output: Contribution to journalArticle

CRMP-1 enhances EVL-mediated actin elongation to build lamellipodia and the actin cortex

Yu-Kemp, H. C., Kemp, J. P. & Brieher, W. M., Jan 1 2017, In : Journal of Cell Biology. 216, 8, p. 2463-2479 17 p.

Research output: Contribution to journalArticle

Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: Birth, death and adaptation

Calla, B., Noble, K., Johnson, R. M., Walden, K. K. O., Schuler, M. A., Robertson, H. M. & Berenbaum, M. R., Nov 2017, In : Molecular ecology. 26, 21, p. 6021-6035 15 p.

Research output: Contribution to journalArticle

EPRS is a critical mTORC1-S6K1 effector that influences adiposity in mice

Arif, A., Terenzi, F., Potdar, A. A., Jia, J., Sacks, J., China, A., Halawani, D., Vasu, K., Li, X., Brown, J. M., Chen, J., Kozma, S. C., Thomas, G. & Fox, P. L., Feb 16 2017, In : Nature. 542, 7641, p. 357-361 5 p.

Research output: Contribution to journalArticle

Establishment and activity of the D quadrant organizer in the marine gastropod Crepidula fornicata

Henry, J. Q., Lyons, D. C., Perry, K. J. & Osborne, C. C., Nov 15 2017, In : Developmental Biology. 431, 2, p. 282-296 15 p.

Research output: Contribution to journalArticle

Integration of temporal and spatial patterning generates neural diversity

Erclik, T., Li, X., Courgeon, M., Bertet, C., Chen, Z., Baumert, R., Ng, J., Koo, C., Arain, U., Behnia, R., Del Valle Rodriguez, A., Senderowicz, L., Negre, N., White, K. P. & Desplan, C., Jan 19 2017, In : Nature. 541, 7637, p. 365-370 6 p.

Research output: Contribution to journalArticle

Label-Free Imaging of Single Microtubule Dynamics Using Spatial Light Interference Microscopy

Kandel, M. E., Teng, K. W., Selvin, P. R. & Popescu, G., Jan 24 2017, In : ACS Nano. 11, 1, p. 647-655 9 p.

Research output: Contribution to journalArticle

LanCL proteins are not Involved in Lanthionine Synthesis in Mammals

He, C., Zeng, M., Dutta, D., Koh, T. H., Chen, J. & Van Der Donk, W. A., Jan 20 2017, In : Scientific reports. 7, 40980.

Research output: Contribution to journalArticle

Long noncoding RNA MALAT1 promotes hepatocellular carcinoma development by SRSF1 upregulation and mTOR activation

Malakar, P., Shilo, A., Mogilevsky, A., Stein, I., Pikarsky, E., Nevo, Y., Benyamini, H., Elgavish, S., Zong, X., Prasanth, K. V. & Karni, R., Mar 1 2017, In : Cancer Research. 77, 5, p. 1155-1167 13 p.

Research output: Contribution to journalArticle

Long Noncoding RNA PURPL Suppresses Basal p53 Levels and Promotes Tumorigenicity in Colorectal Cancer

Li, X. L., Subramanian, M., Jones, M. F., Chaudhary, R., Singh, D. K., Zong, X., Gryder, B., Sindri, S., Mo, M., Schetter, A., Wen, X., Parvathaneni, S., Kazandjian, D., Jenkins, L. M., Tang, W., Elloumi, F., Martindale, J. L., Huarte, M., Zhu, Y., Robles, A. I. & 9 others, Frier, S. M., Rigo, F., Cam, M., Ambs, S., Sharma, S., Harris, C. C., Dasso, M., Prasanth, K. V. & Lal, A., Sep 5 2017, In : Cell Reports. 20, 10, p. 2408-2423 16 p.

Research output: Contribution to journalArticle

Malat1 regulates myogenic differentiation and muscle regeneration through modulating MyoD transcriptional activity

Chen, X., He, L., Zhao, Y., Li, Y., Zhang, S., Sun, K., So, K., Chen, F., Zhou, L., Lu, L., Wang, L., Zhu, X., Bao, X., Esteban, M. A., Nakagawa, S., Prasanth, K. V., Wu, Z., Sun, H. & Wang, H., Mar 14 2017, In : Cell Discovery. 3, 17002.

Research output: Contribution to journalArticle

Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

Skariah, G., Seimetz, J., Norsworthy, M., Lannom, M. C., Kenny, P. J., Elrakhawy, M., Forsthoefel, C., Drnevich, J., Kalsotra, A. & Ceman, S., Jun 29 2017, In : BMC biology. 15, 1, 54.

Research output: Contribution to journalArticle

Probing the Heterogeneity of Protein Kinase Activation in Cells by Super-resolution Microscopy

Zhang, R., Fruhwirth, G. O., Coban, O., Barrett, J. E., Burgoyne, T., Lee, S. H., Simonson, P. D., Baday, M., Kholodenko, B. N., Futter, C. E., Ng, T. & Selvin, P. R., Jan 24 2017, In : ACS Nano. 11, 1, p. 249-257 9 p.

Research output: Contribution to journalArticle

Prosurvival long noncoding RNA PINCR regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3

Chaudhary, R., Gryder, B., Woods, W. S., Subramanian, M., Jones, M. F., Li, X. L., Jenkins, L. M., Shabalina, S. A., Mo, M., Dasso, M., Yang, Y., Wakefield, L. M., Zhu, Y., Frier, S. M., Moriarity, B. S., Prasanth, K. V., Perez-Pinera, P. & Lal, A., Jun 5 2017, In : eLife. 6, e23244.

Research output: Contribution to journalArticle

PSIP1/p75 promotes tumorigenicity in breast cancer cells by promoting the transcription of cell cycle genes

Singh, D. K., Gholamalamdari, O., Jadaliha, M., Li, X. L., Lin, Y. C., Zhang, Y., Guang, S., Hashemikhabir, S., Tiwari, S., Zhu, Y. J., Khan, A., Thomas, A., Chakraborty, A., Macias, V., Balla, A. K., Bhargava, R., Janga, S. C., Ma, J., Prasanth, S. G., Lal, A. & 1 others, Kannanganattu, P. K., Oct 1 2017, In : Carcinogenesis. 38, 10, p. 966-975 10 p., bgx062.

Research output: Contribution to journalArticle

Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution

Fei, J., Jadaliha, M., Harmon, T. S., Li, I. T. S., Hua, B., Hao, Q., Holehouse, A. S., Reyer, M., Sun, Q., Freier, S. M., Pappu, R. V., Prasanth, K. V. & Ha, T., Dec 1 2017, In : Journal of cell science. 130, 24, p. 4180-4192 13 p.

Research output: Contribution to journalArticle

Site-specific regulation of histone H1 phosphorylation in pluripotent cell differentiation

Liao, R. & Mizzen, C. A., May 22 2017, In : Epigenetics and Chromatin. 10, 1, 29.

Research output: Contribution to journalArticle

Super-resolution imaging of synaptic and extra-synaptic AMPA receptors with Different-Sized fluorescent probes

Lee, S. H., Jin, C., Cai, E., Ge, P., Ishitsuka, Y., Teng, K. W., De Thomaz, A. A., Nall, D., Baday, M., Jeyifous, O., Demonte, D., Dundas, C. M., Park, S., Delgado, J. Y., Green, W. N. & Selvin, P. R., Jul 27 2017, In : eLife. 6, e27744.

Research output: Contribution to journalArticle

Temporal association of ORCA/LRWD1 to late-firing origins during G1 dictates heterochromatin replication and organization

Wang, Y., Khan, A., Marks, A. B., Smith, O. K., Giri, S., Lin, Y. C., Creager, R., MacAlpine, D. M., Prasanth, K. V., Aladjem, M. I. & Prasanth, S. G., Mar 17 2017, In : Nucleic acids research. 45, 5, p. 2490-2502 13 p.

Research output: Contribution to journalArticle

Temporal dynamics of neurogenomic plasticity in response to social interactions in male threespined sticklebacks

Bukhari, S. A., Saul, M. C., Seward, C. H., Zhang, H., Bensky, M., James, N., Zhao, S. D., Chandrasekaran, S., Stubbs, L. & Bell, A. M., Jul 2017, In : PLoS genetics. 13, 7, e1006840.

Research output: Contribution to journalArticle

The Drosophila Duox maturation factor is a key component of a positive feedback loop that sustains regeneration signaling

Khan, S. J., Abidi, S. N. F., Skinner, A., Tian, Y. & Smith-Bolton, R. K., Jul 2017, In : PLoS genetics. 13, 7, e1006937.

Research output: Contribution to journalArticle

The maternal-zygotic transition and zygotic activation of the Mnemiopsis leidyi genome occurs within the first three cleavage cycles

Davidson, P. L., Koch, B. J., Schnitzler, C. E., Henry, J. Q., Martindale, M. Q., Baxevanis, A. D. & Browne, W. E., Nov 2017, In : Molecular reproduction and development. 84, 11, p. 1218-1229 12 p.

Research output: Contribution to journalArticle

Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice

Saul, M. C., Seward, C. H., Troy, J. M., Zhang, H., Sloofman, L. G., Lu, X., Weisner, P. A., Caetano-Anolles, D., Sun, H., Zhao, S. D., Chandrasekaran, S., Sinha, S. & Stubbs, L., Jun 2017, In : Genome Research. 27, 6, p. 959-972 14 p.

Research output: Contribution to journalArticle

α7β1 integrin regulation of gene transcription in skeletal muscle following an acute bout of eccentric exercise

Mahmassani, Z. S., Son, K., Pincu, Y., Munroe, M., Drnevich, J., Chen, J. & Boppart, M., May 11 2017, In : American Journal of Physiology - Cell Physiology. 312, 5, p. 638-650 13 p.

Research output: Contribution to journalArticle

2016

A rapid, gentle and scalable method for dissociation and fluorescent sorting of imaginal disc cells for mRNA sequencing

Khan, S. J., Abidi, S. N. F., Tian, Y., Skinner, A. & Smith-Bolton, R. K., Apr 2 2016, In : Fly. 10, 2, p. 73-80 8 p.

Research output: Contribution to journalArticle

A Unique Class of Neural Progenitors in the Drosophila Optic Lobe Generates Both Migrating Neurons and Glia

Chen, Z., Del Valle Rodriguez, A., Li, X., Erclik, T., Fernandes, V. M. & Desplan, C., Apr 26 2016, In : Cell Reports. 15, 4, p. 774-786 13 p.

Research output: Contribution to journalArticle

Collapsin response mediator protein-1 regulates Arp2/3-dependent actin assembly

Yu-Kemp, H. C. & Brieher, W. M., Jan 8 2016, In : Journal of Biological Chemistry. 291, 2, p. 658-664 7 p.

Research output: Contribution to journalArticle

Cytology of DNA Replication Reveals Dynamic Plasticity of Large-Scale Chromatin Fibers

Deng, X., Zhironkina, O. A., Cherepanynets, V. D., Strelkova, O. S., Kireev, I. I. & Belmont, A. S., Sep 26 2016, In : Current Biology. 26, 18, p. 2527-2534 8 p.

Research output: Contribution to journalArticle

Functional and prognostic significance of long non-coding RNA MALAT1 as a metastasis driver in ER negative lymph node negative breast cancer

Jadaliha, M., Zong, X., Malakar, P., Ray, T., Singh, D. K., Freier, S. M., Jensen, T., Prasanth, S. G., Karni, R., Ray, P. S. & Prasanth, K. V., Jan 1 2016, In : Oncotarget. 7, 26, p. 40418-40436 19 p.

Research output: Contribution to journalArticle

Hsp90 and p23 Molecular Chaperones Control Chromatin Architecture by Maintaining the Functional Pool of the RSC Chromatin Remodeler

Echtenkamp, F. J., Gvozdenov, Z., Adkins, N. L., Zhang, Y., Lynch-Day, M., Watanabe, S., Peterson, C. L. & Freeman, B. C., Dec 1 2016, In : Molecular cell. 64, 5, p. 888-899 12 p.

Research output: Contribution to journalArticle

Interphase H1 phosphorylation: Regulation and functions in chromatin

Liao, R. & Mizzen, C. A., Mar 1 2016, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1859, 3, p. 476-485 10 p.

Research output: Contribution to journalArticle

Labeling proteins inside living cells using external fluorophores for microscopy

Teng, K. W., Ishitsuka, Y., Ren, P., Youn, Y., Deng, X., Ge, P., Belmont, A. S. & Selvin, P. R., Dec 9 2016, In : eLife. 5, DECEMBER2016, e20378.

Research output: Contribution to journalArticle

Lens regeneration from the cornea requires suppression of Wnt/β-catenin signaling

Hamilton, P. W., Sun, Y. & Henry, J. J., Apr 1 2016, In : Experimental Eye Research. 145, p. 206-215 10 p.

Research output: Contribution to journalArticle

Leucyl-tRNA Synthetase Activates Vps34 in Amino Acid-Sensing mTORC1 Signaling

Yoon, M. S., Son, K., Arauz, E., Han, J. M., Kim, S. & Chen, J., Aug 9 2016, In : Cell Reports. 16, 6, p. 1510-1517 8 p.

Research output: Contribution to journalArticle

Long non-coding RNA malat-1 is dispensable during pressure overload-induced cardiac remodeling and failure in mice

Peters, T., Hermans-Beijnsberger, S., Beqqali, A., Bitsch, N., Nakagawa, S., Prasanth, K. V., De Windt, L. J., Van Oort, R. J., Heymans, S. & Schroen, B., Feb 2016, In : PloS one. 11, 2, e0150236.

Research output: Contribution to journalArticle

Melatonin signal transduction pathways require E-Box-Mediated transcription of Per1 and Per2 to reset the SCN clock at dusk

Kandalepas, P. C., Mitchell, J. W. & Gillette, M. U. G., Jun 2016, In : PloS one. 11, 6, e0157824.

Research output: Contribution to journalArticle