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2020

An automated aquatic rack system for rearing marine invertebrates

Henry, J. Q., Lesoway, M. P. & Perry, K. J., May 4 2020, In : BMC biology. 18, 1, 46.

Research output: Contribution to journalArticle

Open Access

BMP signaling plays a role in anterior-neural/head development, but not organizer activity, in the gastropod Crepidula fornicata

Lyons, D. C., Perry, K. J., Batzel, G. & Henry, J. Q., Jul 15 2020, In : Developmental Biology. 463, 2, p. 135-157 23 p.

Research output: Contribution to journalArticle

Open Access

Circadian rhythm of redox state regulates membrane excitability in hippocampal CA1 neurons

Naseri Kouzehgarani, G., Bothwell, M. Y. & Gillette, M. U., Jan 1 2020, In : European Journal of Neuroscience. 51, 1, p. 34-46 13 p.

Research output: Contribution to journalArticle

Efficient and reproducible multigene expression after single-step transfection using improved bac transgenesis and engineering toolkit

Zhao, B., Chaturvedi, P., Zimmerman, D. L. & Belmont, A. S., May 15 2020, In : ACS synthetic biology. 9, 5, p. 1100-1116 17 p.

Research output: Contribution to journalArticle

Emergence of functional neuromuscular junctions in an engineered, multicellular spinal cord-muscle bioactuator

Kaufman, C. D., Liu, S. C., Cvetkovic, C., Lee, C. A., Naseri Kouzehgarani, G., Gillette, R., Bashir, R. & Gillette, M. U., Jun 1 2020, In : Bioengineering. 4, 2, 026104.

Research output: Contribution to journalArticle

Open Access

Gene expression amplification by nuclear speckle association

Kim, J., Venkata, N. C., Gonzalez, G. A. H., Khanna, N. & Belmont, A. S., Jan 6 2020, In : Journal of Cell Biology. 219, 1

Research output: Contribution to journalArticle

Open Access

LncRNA-mediated regulation of SOX9 expression in basal subtype breast cancer cells

Tariq, A., Hao, Q., Sun, Q., Singh, D. K., Jadaliha, M., Zhang, Y., Chetlangia, N., Ma, J., Holton, S. E., Bhargava, R., Lal, A., Prasanth, S. G. & Prasanth, K. V., Jan 1 2020, In : RNA. 26, 2, p. 175-185 11 p.

Research output: Contribution to journalArticle

Mechanism of Long-Range Chromosome Motion Triggered by Gene Activation

Wang, A., Kolhe, J. A., Gioacchini, N., Baade, I., Brieher, W. M., Peterson, C. L. & Freeman, B. C., Feb 10 2020, In : Developmental cell. 52, 3, p. 309-320.e5

Research output: Contribution to journalArticle

Muscle-derived TRAIL negatively regulates myogenic differentiation

Kim, D., Singh, N., Waldemer-Streyer, R. J., Yoon, M. S. & Chen, J., Sep 1 2020, In : Experimental Cell Research. 394, 1, 112165.

Research output: Contribution to journalArticle

Pin1 Binding to Phosphorylated PSD-95 Regulates the Number of Functional Excitatory Synapses

Delgado, J. Y., Nall, D. & Selvin, P. R., Mar 13 2020, In : Frontiers in Molecular Neuroscience. 13, 10.

Research output: Contribution to journalArticle

Open Access

Short-Wave Infrared Quantum Dots with Compact Sizes as Molecular Probes for Fluorescence Microscopy

Sarkar, S., Le, P., Geng, J., Liu, Y., Han, Z., Zahid, M. U., Nall, D., Youn, Y., Selvin, P. R. & Smith, A. M., Feb 19 2020, In : Journal of the American Chemical Society. 142, 7, p. 3449-3462 14 p.

Research output: Contribution to journalArticle

The FMRP-MOV10 complex: A translational regulatory switch modulated by G-Quadruplexes

Kenny, P. J., Kim, M., Skariah, G., Nielsen, J., Lannom, M. C. & Ceman, S., Jan 24 2020, In : Nucleic acids research. 48, 2, p. 862-878 17 p.

Research output: Contribution to journalArticle

Open Access

Tyramide signal amplification mass spectrometry (TSA-MS) ratio identifies nuclear speckle proteins

Dopie, J., Sweredoski, M. J., Moradian, A. & Belmont, A. S., Sep 7 2020, In : The Journal of cell biology. 219, 9

Research output: Contribution to journalArticle

Open Access
2019

Allele-specific enhancer interaction at the Peg3 imprinted domain

Kim, J., Frey, W. D., Sharma, K., Ghimire, S., Teruyama, R. & Stubbs, L., 2019, In : PloS one. 14, 10, e0224287.

Research output: Contribution to journalArticle

Open Access

A mouse mutation that dysregulates neighboring GALNT17 and AUTS2 genes is associated with phenotypes related to the human AUTS2 syndrome

Weisner, P. A., Chen, C. Y., Sun, Y., Yoo, J., Kao, W. C., Zhang, H., Baltz, E. T., Troy, J. M. & Stubbs, L., Nov 1 2019, In : G3: Genes, Genomes, Genetics. 9, 11, p. 3891-3906 16 p.

Research output: Contribution to journalArticle

Open Access

An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages

Negi, S., Bolt, C. C., Zhang, H. & Stubbs, L., Feb 15 2019, In : Developmental Biology. 446, 2, p. 180-192 13 p.

Research output: Contribution to journalArticle

Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge

Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., Seward, C. H., Sloofman, L., Chandrasekaran, S., Bell, A. M., Stubbs, L., Robinson, G. E., Zhao, S. D. & Sinha, S., Jan 2019, In : Genes, Brain and Behavior. 18, 1, p. e12502 e12502.

Research output: Contribution to journalArticle

Epi-illumination gradient light interference microscopy for imaging opaque structures

Kandel, M. E., Hu, C., Naseri Kouzehgarani, G., Min, E., Sullivan, K. M., Kong, H., Li, J. M., Robson, D. N., Gillette, M. U., Best-Popescu, C. & Popescu, G., Dec 1 2019, In : Nature communications. 10, 1, 4691.

Research output: Contribution to journalArticle

Open Access

Ex vivo eye tissue culture methods for xenopus

Henry, J. J., Perry, K. J. & Hamilton, P. W., Apr 2019, In : Cold Spring Harbor protocols. 2019, 4, p. 274-278 5 p.

Research output: Contribution to journalArticle

Graphene oxide substrates with N-cadherin stimulates neuronal growth and intracellular transport

Qin, E. C., Kandel, M. E., Liamas, E., Shah, T. B., Kim, C., Kaufman, C. D., Zhang, Z. J., Popescu, G., Gillette, M. U., Leckband, D. E. & Kong, H., May 2019, In : Acta Biomaterialia. 90, p. 412-423 12 p.

Research output: Contribution to journalArticle

Honey bee neurogenomic responses to affiliative and agonistic social interactions

Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Corona, F., Cash-Ahmed, A. C., Seward, C. H., Chandrasekaran, S., Stubbs, L. J. & Robinson, G. E., Jan 2019, In : Genes, Brain and Behavior. 18, 1, e12509.

Research output: Contribution to journalArticle

Immune system-mediated atherosclerosis caused by deficiency of long non-coding RNA MALAT1 in ApoE-/- mice

Gast, M., Rauch, B. H., Nakagawa, S., Haghikia, A., Jasina, A., Haas, J., Nath, N., Jensen, L., Stroux, A., Böhm, A., Friebel, J., Rauch, U., Skurk, C., Blankenberg, S., Zeller, T., Prasanth, K. V., Meder, B., Kuss, A., Landmesser, U. & Poller, W., Feb 1 2019, In : Cardiovascular research. 115, 2, p. 302-314 13 p.

Research output: Contribution to journalArticle

Lack of muscle mTOR kinase activity causes early onset myopathy and compromises whole-body homeostasis

Zhang, Q., Duplany, A., Moncollin, V., Mouradian, S., Goillot, E., Mazelin, L., Gauthier, K., Streichenberger, N., Angleraux, C., Chen, J., Ding, S., Schaeffer, L. & Gangloff, Y. G., Feb 2019, In : Journal of Cachexia, Sarcopenia and Muscle. 10, 1, p. 35-53 19 p.

Research output: Contribution to journalArticle

Methods for examining lens regeneration in xenopus

Henry, J. J., Perry, K. J. & Hamilton, P. W., Apr 2019, In : Cold Spring Harbor protocols. 2019, 4, p. 268-273 6 p.

Research output: Contribution to journalArticle

Molecular markers for corneal epithelial cells in larval vs. adult Xenopus frogs

Sonam, S., Srnak, J. A., Perry, K. J. & Henry, J. J., Jul 2019, In : Experimental Eye Research. 184, p. 107-125 19 p.

Research output: Contribution to journalArticle

Multiple kinesins induce tension for smooth cargo transport

Tjioe, M., Shukla, S., Vaidya, R., Troitskaia, A., Bookwalter, C., Trybus, K. M., Chemla, Y. R. & Selvin, P. R., Oct 2019, In : eLife. 8, e50974.

Research output: Contribution to journalArticle

Open Access

Nontranslational function of leucyl-tRNA synthetase regulates myogenic differentiation and skeletal muscle regeneration

Son, K., You, J. S., Yoon, M. S., Dai, C., Kim, J. H., Khanna, N., Banerjee, A., Martinis, S. A., Han, G., Han, J. M., Kim, S. & Chen, J., May 1 2019, In : Journal of Clinical Investigation. 129, 5, p. 2088-2093 6 p.

Research output: Contribution to journalArticle

Open Access

Nuclear speckle fusion via long-range directional motion regulates speckle morphology after transcriptional inhibition

Kim, J., Han, K. Y., Khanna, N., Ha, T. & Belmont, A. S., Apr 1 2019, In : Journal of cell science. 132, 8, 226563.

Research output: Contribution to journalArticle

Open Access

Optical excitation and detection of neuronal activity

Hu, C., Sam, R., Shan, M., Nastasa, V., Wang, M., Kim, T., Gillette, M., Sengupta, P. & Popescu, G., Mar 2019, In : Journal of Biophotonics. 12, 3, e201800269.

Research output: Contribution to journalArticle

Photon-separation to enhance the spatial resolution of pulsed STED microscopy

Tortarolo, G., Sun, Y., Teng, K. W., Ishitsuka, Y., Lanzanó, L., Selvin, P. R., Barbieri, B., Diaspro, A. & Vicidomini, G., Jan 28 2019, In : Nanoscale. 11, 4, p. 1754-1761 8 p.

Research output: Contribution to journalArticle

Pituitary Adenylate Cyclase-Activating Peptide (PACAP)-Glutamate Co-transmission Drives Circadian Phase-Advancing Responses to Intrinsically Photosensitive Retinal Ganglion Cell Projections by Suprachiasmatic Nucleus

Lindberg, P. T., Mitchell, J. W., Burgoon, P. W., Beaulé, C., Weihe, E., Schäfer, M. K. H., Eiden, L. E., Jiang, S. Z. & Gillette, M. U., Dec 6 2019, In : Frontiers in Neuroscience. 13, 1281.

Research output: Contribution to journalArticle

Open Access

The Hsp90 Molecular Chaperone Regulates the Transcription Factor Network Controlling Chromatin Accessibility

Gvozdenov, Z., Bendix, L. D., Kolhe, J. & Freeman, B. C., Dec 6 2019, In : Journal of Molecular Biology. 431, 24, p. 4993-5003 11 p.

Research output: Contribution to journalArticle

The nuclear and DNA-associated molecular chaperone network

Gvozdenov, Z., Kolhe, J. & Freeman, B. C., Oct 2019, In : Cold Spring Harbor Perspectives in Biology. 11, 10, a034009.

Research output: Contribution to journalArticle

Open Access

The role of sensory innervation in cornea-lens regeneration

Perry, K. J., Hamilton, P. W., Sonam, S., Singh, R. & Henry, J. J., Jul 2019, In : Developmental Dynamics. 248, 7, p. 530-544 15 p.

Research output: Contribution to journalArticle

Understanding cornea homeostasis and wound healing using a novel model of stem cell deficiency in Xenopus

Adil, M. T., Simons, C. M., Sonam, S. & Henry, J. J., Oct 2019, In : Experimental Eye Research. 187, 107767.

Research output: Contribution to journalArticle

2018

Aligning Synthetic Hippocampal Neural Circuits via Self-Rolled-Up Silicon Nitride Microtube Arrays

Cangellaris, O. V., Corbin, E. A., Froeter, P., Michaels, J. A., Li, X. & Gillette, M. U., Oct 24 2018, In : ACS Applied Materials and Interfaces. 10, 42, p. 35705-35714 10 p.

Research output: Contribution to journalArticle

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

A natural antisense lncRNA controls breast cancer progression by promoting tumor suppressor gene mRNA stability

Jadaliha, M., Gholamalamdari, O., Tang, W., Zhang, Y., Petracovici, A., Hao, Q., Tariq, A., Kim, T. G., Holton, S. E., Singh, D. K., Li, X. L., Freier, S. M., Ambs, S., Bhargava, R., Lal, A., Prasanth, S. G., Ma, J. & Prasanth, K. V., Nov 2018, In : PLoS genetics. 14, 11, e1007802.

Research output: Contribution to journalArticle

Cell fate changes induced by a Distal-less enhancer-trap transgene in the Drosophila antennal imaginal disc

Abidi, S. N. F. & Smith-Bolton, R. K., Dec 1 2018, In : Scientific reports. 8, 1, 4950.

Research output: Contribution to journalArticle

CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci

Tasan, I., Sustackova, G., Zhang, L., Kim, J., Sivaguru, M., HamediRad, M., Wang, Y., Genova, J., Ma, J., Belmont, A. S. & Zhao, H., Jan 1 2018, In : Nucleic acids research. 46, 17, e100.

Research output: Contribution to journalArticle

Delivery of Fluorescent Probes Using Streptolysin O for Fluorescence Microscopy of Living Cells

Teng, K. W., Ren, P. & Selvin, P. R., Jan 1 2018, (Accepted/In press) In : Current Protocols in Protein Science.

Research output: Contribution to journalArticle

Development of Concurrent Retinotopic Maps in the Fly Motion Detection Circuit

Pinto-Teixeira, F., Koo, C., Rossi, A. M., Neriec, N., Bertet, C., Li, X., Del-Valle-Rodriguez, A. & Desplan, C., Apr 5 2018, In : Cell. 173, 2, p. 485-498.e11

Research output: Contribution to journalArticle

Ectomesoderm and epithelial–mesenchymal transition-related genes in spiralian development

Osborne, C. C., Perry, K. J., Shankland, M. & Henry, J. Q., Oct 2018, In : Developmental Dynamics. 247, 10, p. 1097-1120 24 p.

Research output: Contribution to journalArticle

Effects of rapamycin on growth hormone receptor knockout mice

Fang, Y., Hill, C. M., Darcy, J., Reyes-Ordoñez, A., Arauz, E., McFadden, S., Zhang, C., Osland, J., Gao, J., Zhang, T., Frank, S. J., Javors, M. A., Yuan, R., Kopchick, J. J., Sun, L. Y., Chen, J. & Bartke, A., Feb 13 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 7, p. E1495-E1503

Research output: Contribution to journalArticle

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. U., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journalArticle

Genetic testing and autism: Tutorial for communication sciences and disorders

DeThorne, L. S. & Ceman, S., Jul 1 2018, In : Journal of Communication Disorders. 74, p. 61-73 13 p.

Research output: Contribution to journalArticle

Helicobacter pylori Infection Modulates Host Cell Metabolism through VacA-Dependent Inhibition of mTORC1

Kim, I. J., Lee, J., Oh, S. J., Yoon, M. S., Jang, S. S., Holland, R. L., Reno, M. L., Hamad, M. N., Maeda, T., Chung, H. J., Chen, J. & Blanke, S. R., May 9 2018, In : Cell Host and Microbe. 23, 5, p. 583-593.e8

Research output: Contribution to journalArticle