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2012

Arginine methylation of RNA-binding proteins regulates cell function and differentiation

Blackwell, E. & Ceman, S., Mar 2012, In : Molecular reproduction and development. 79, 3, p. 163-175 13 p.

Research output: Contribution to journalArticle

Association of modified cytosines and the methylated DNA-binding protein MeCP2 with distinctive structural domains of lampbrush chromatin

Morgan, G. T., Jones, P. & Bellini, M., Dec 2012, In : Chromosome Research. 20, 8, p. 925-942 18 p.

Research output: Contribution to journalArticle

Biomimetic surface engineering of lanthanide-doped upconversion nanoparticles as versatile bioprobes

Li, L. L., Zhang, R., Yin, L., Zheng, K., Qin, W., Selvin, P. R. & Lu, Y., Jun 18 2012, In : Angewandte Chemie - International Edition. 51, 25, p. 6121-6125 5 p.

Research output: Contribution to journalArticle

Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons

Wang, T. A., Yu, Y. V., Govindaiah, G., Ye, X., Artinian, L., Coleman, T. P., Sweedler, J. V., Cox, C. L. & Gillette, M. U., Aug 17 2012, In : Science. 337, 6096, p. 839-842 4 p.

Research output: Contribution to journalArticle

Cleavage pattern and fate map of the mesentoblast, 4d, in the gastropod Crepidula: a hallmark of spiralian development

Lyons, D. C., Perry, K. J., Lesoway, M. P. & Henry, J. Q., Sep 19 2012, In : EvoDevo. 3, 1, 21.

Research output: Contribution to journalArticle

Direct detection of adenosine in undiluted serum using a luminescent aptamer sensor attached to a terbium complex

Li, L. L., Ge, P., Selvin, P. R. & Lu, Y., Sep 18 2012, In : Analytical chemistry. 84, 18, p. 7852-7856 5 p.

Research output: Contribution to journalArticle

Dynamic association of orca with prereplicative complex components regulates dna replication initiation

Shen, Z., Chakraborty, A., Jain, A., Giri, S., Ha, T., Prasanth, K. V. & Prasanth, S. G., Aug 1 2012, In : Molecular and cellular biology. 32, 15, p. 3107-3120 14 p.

Research output: Contribution to journalArticle

Ecologically appropriate xenobiotics induce cytochrome P450s in Apis Mellifera

Johnson, R. M., Mao, W., Pollock, H. S., Niu, G., Schuler, M. A. & Berenbaum, M. R., Feb 3 2012, In : PloS one. 7, 2, e31051.

Research output: Contribution to journalArticle

Evolutionary toxicogenomics: Diversification of the Cyp12d1 and Cyp12d3 genes in Drosophila species

McDonnell, C. M., King, D., Comeron, J. M., Li, H., Sun, W., Berenbaum, M. R., Schuler, M. A. & Pittendrigh, B. R., Jun 1 2012, In : Journal of Molecular Evolution. 74, 5-6, p. 281-296 16 p.

Research output: Contribution to journalArticle

Expanding the cellular molecular chaperone network through the ubiquitous cochaperones

Echtenkamp, F. J. & Freeman, B. C., Mar 1 2012, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1823, 3, p. 668-673 6 p.

Research output: Contribution to journalArticle

Glycerolipid signals alter mTOR complex 2 (mTORC2) to diminish insulin signaling

Zhang, C., Wendel, A. A., Keogh, M. R., Harris, T. E., Chen, J. & Coleman, R. A., Jan 31 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 5, p. 1667-1672 6 p.

Research output: Contribution to journalArticle

Identification of key regulatory pathways of myeloid differentiation using an mESC-based karyotypically normal cell model

Li, D., Yang, H., Nan, H., Liu, P., Pang, S., Zhao, Q., Karni, R., Kamps, M. P., Xu, Y., Zhou, J., Wiedmer, T., Sims, P. J. & Wang, F., Dec 6 2012, In : Blood. 120, 24, p. 4712-4719 8 p.

Research output: Contribution to journalArticle

Malat1 is not an essential component of nuclear speckles in mice

Nakagawa, S., Ip, J. Y., Shioi, G., Tripathi, V., Zong, X., Hirose, T. & Prasanth, K. V., Aug 2012, In : RNA. 18, 8, p. 1487-1499 13 p.

Research output: Contribution to journalArticle

Multicolor super-resolution DNA imaging for genetic analysis

Baday, M., Cravens, A., Hastie, A., Kim, H., Kudeki, D. E., Kwok, P. Y., Xiao, M. & Selvin, P. R., Jul 11 2012, In : Nano letters. 12, 7, p. 3861-3866 6 p.

Research output: Contribution to journalArticle

Orc2 protects ORCA from ubiquitin-mediated degradation

Shen, Z. & Prasanth, S. G., Oct 1 2012, In : Cell Cycle. 11, 19, p. 3578-3589 12 p.

Research output: Contribution to journalArticle

Over a century of neuron culture: From the hanging drop to microfluidic devices

Millet, L. J. & Gillette, M. U., Dec 2012, In : Yale Journal of Biology and Medicine. 85, 4, p. 501-521 21 p.

Research output: Contribution to journalArticle

Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes

Yin, P., Knolhoff, A. M., Rosenberg, H. J., Millet, L. J., Gillette, M. U. & Sweedler, J. V., Aug 3 2012, In : Journal of Proteome Research. 11, 8, p. 3965-3973 9 p.

Research output: Contribution to journalArticle

Reactive and bioactive cationic α-helical polypeptide template for nonviral gene delivery

Gabrielson, N. P., Lu, H., Yin, L., Li, D., Wang, F. & Cheng, J., Jan 27 2012, In : Angewandte Chemie - International Edition. 51, 5, p. 1143-1147 5 p.

Research output: Contribution to journalArticle

Replicating and transcribing on twisted roads of chromatin

Giri, S. & Prasanth, S. G., May 1 2012, In : Briefings in Functional Genomics. 11, 3, p. 188-204 17 p., elr047.

Research output: Contribution to journalArticle

SRSF1 regulates the assembly of pre-mRNA processing factors in nuclear speckles

Tripathi, V., Song, D. Y., Zong, X., Shevtsov, S. P., Hearn, S., Fu, X. D., Dundr, M. & Prasanth, K. V., Sep 15 2012, In : Molecular biology of the cell. 23, 18, p. 3694-3706 13 p.

Research output: Contribution to journalArticle

The natural product cucurbitacin e inhibits depolymerization of actin filaments

Sörensen, P. M., Iacob, R. E., Fritzsche, M., Engen, J. R., Brieher, W. M., Charras, G. & Eggert, U. S., Sep 21 2012, In : ACS chemical biology. 7, 9, p. 1502-1508 7 p.

Research output: Contribution to journalArticle

The p23 Molecular Chaperone and GCN5 Acetylase Jointly Modulate Protein-DNA Dynamics and Open Chromatin Status

Zelin, E., Zhang, Y., Toogun, O. A., Zhong, S. & Freeman, B. C., Nov 9 2012, In : Molecular cell. 48, 3, p. 459-470 12 p.

Research output: Contribution to journalArticle

The recruitment of the U5 snRNP to nascent transcripts requires internal loop 1 of U5 snRNA

Kim, R., Paschedag, J., Novikova, N. & Bellini, M., Dec 1 2012, In : Chromosome Research. 20, 8, p. 943-951 9 p.

Research output: Contribution to journalArticle

The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression

Ament, S. A., Wang, Y., Chen, C. C., Blatti, C. A., Hong, F., Liang, Z. S., Negre, N., White, K. P., Rodriguez-Zas, S. L., Mizzen, C. A., Sinha, S., Zhong, S. & Robinson, G. E., Mar 2012, In : PLoS genetics. 8, 3, e1002596.

Research output: Contribution to journalArticle

Using fixed fiduciary markers for stage drift correction

Lee, S. H., Baday, M., Tjioe, M., Simonson, P. D., Zhang, R., Cai, E. & Selvin, P. R., May 21 2012, In : Optics Express. 20, 11, p. 12177-12183 7 p.

Research output: Contribution to journalArticle

VITAL NMR: Using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy

Brothers, M. C., Nesbitt, A. E., Hallock, M. J., Rupasinghe, S. G., Tang, M., Harris, J., Baudry, J., Schuler, M. A. & Rienstra, C. M., Jan 1 2012, In : Journal of Biomolecular NMR. 52, 1, p. 41-56 16 p.

Research output: Contribution to journalArticle

Williams Syndrome Transcription Factor is critical for neural crest cell function in Xenopus laevis

Barnett, C., Yazgan, O., Kuo, H. C., Malakar, S., Thomas, T., Fitzgerald, A., Harbour, W., Henry, J. J. & Krebs, J. E., Sep 2012, In : Mechanisms of Development. 129, 9-12, p. 324-338 15 p.

Research output: Contribution to journalArticle

α-Actinin-4/FSGS1 is required for Arp2/3-dependent actin assembly at the adherens junction

Tang, V. W. & Brieher, W. M., Jan 2012, In : Journal of Cell Biology. 196, 1, p. 115-130 16 p.

Research output: Contribution to journalArticle

2013

3D super-resolution imaging with blinking quantum dots

Wang, Y., Fruhwirth, G., Cai, E., Ng, T. & Selvin, P. R., Nov 13 2013, In : Nano letters. 13, 11, p. 5233-5241 9 p.

Research output: Contribution to journalArticle

A reciprocal translocation dissects roles of Pax6 alternative promoters and upstream regulatory elements in the development of pancreas, brain, and eye

Elso, C., Lu, X., Weisner, P. A., Thompson, H. L., Skinner, A., Carver, E. & Stubbs, L., Sep 1 2013, In : Genesis. 51, 9, p. 630-646 17 p.

Research output: Contribution to journalArticle

Cationic, helical polypeptide-based gene delivery for IMR-90 fibroblasts and human embryonic stem cells

Yen, J., Zhang, Y., Gabrielson, N. P., Yin, L., Guan, L., Chaudhury, I., Lu, H., Wang, F. & Cheng, J., Jul 2013, In : Biomaterials Science. 1, 7, p. 719-727 9 p.

Research output: Contribution to journalArticle

Cytochrome P450 Genes from the Sacred Lotus Genome

Nelson, D. R. & Schuler, M. A., Sep 1 2013, In : Tropical Plant Biology. 6, 2-3, p. 138-151 14 p.

Research output: Contribution to journalArticle

Distinct amino acid-sensing mTOR pathways regulate skeletal myogenesis

Yoon, M. S. & Chen, J., Dec 1 2013, In : Molecular biology of the cell. 24, 23, p. 3754-3763 10 p.

Research output: Contribution to journalArticle

Duration of rapamycin treatment has differential effects on metabolism in mice

Fang, Y., Westbrook, R., Hill, C., Boparai, R. K., Arum, O., Spong, A., Wang, F., Javors, M. A., Chen, J., Sun, L. Y. & Bartke, A., Mar 5 2013, In : Cell Metabolism. 17, 3, p. 456-462 7 p.

Research output: Contribution to journalArticle

Flt3L is a novel regulator of skeletal myogenesis

Ge, Y., Waldemer, R. J., Nalluri, R., Nuzzi, P. D. & Chen, J., 2013, In : Journal of cell science. 126, 15, p. 3370-3379 10 p.

Research output: Contribution to journalArticle

Gene expression profiling reveals the heterogeneous transcriptional activity of Oct3/4 and its possible interaction with Gli2 in mouse embryonic stem cells

Li, Y., Drnevich, J., Akraiko, T., Band, M., Li, D., Wang, F., Matoba, R. & Tanaka, T. S., Nov 1 2013, In : Genomics. 102, 5-6, p. 456-467 12 p.

Research output: Contribution to journalArticle

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In : Genome biology. 14, 5, R41.

Research output: Contribution to journalArticle

Gravity persistent signal 1 (GPS1) reveals novel cytochrome P450s involved in Gravitropism

Withers, J. C., Shipp, M. J., Rupasinghe, S. G., Sukumar, P., Schuler, M. A., Muday, G. K. & Wyatt, S. E., Jan 1 2013, In : American journal of botany. 100, 1, p. 183-193 11 p.

Research output: Contribution to journalArticle

Histone H4 deacetylation facilitates 53BP1 DNA damage signaling and double-strand break repair

Hsiao, K. Y. & Mizzen, C. A., Jun 1 2013, In : Journal of Molecular Cell Biology. 5, 3, p. 157-165 9 p.

Research output: Contribution to journalArticle

In vivo optical trapping indicates kinesin's stall force is reduced by dynein during intracellular transport

Blehm, B. H., Schroer, T. A., Trybus, K. M., Chemla, Y. R. & Selvin, P. R., Feb 26 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3381-3386 6 p.

Research output: Contribution to journalArticle

Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB

Tripathi, V., Shen, Z., Chakraborty, A., Giri, S., Freier, S. M., Wu, X., Zhang, Y., Gorospe, M., Prasanth, S. G., Lal, A. & Prasanth, K. V., 2013, In : PLoS genetics. 9, 3, e1003368.

Research output: Contribution to journalArticle

Mammalian target of rapamycin and Rictor control neutrophil chemotaxis by regulating Rac/Cdc42 activity and the actin cytoskeleton

He, Y., Li, D., Cook, S. L., Yoon, M. S., Kapoor, A., Rao, C. V., Kenis, P. J. A., Chen, J. & Wang, F., Nov 1 2013, In : Molecular biology of the cell. 24, 21, p. 3369-3380 12 p.

Research output: Contribution to journalArticle

Mechanistic target of rapamycin controls homeostasis of adipogenesis

Yoon, M. S., Zhang, C., Sun, Y., Schoenherr, C. J. & Chen, J., Aug 1 2013, In : Journal of Lipid Research. 54, 8, p. 2166-2173 8 p.

Research output: Contribution to journalArticle

Motor domain phosphorylation modulates kinesin-1 transport

DeBerg, H. A., Blehm, B. H., Sheung, J., Thompson, A. R., Bookwalter, C. S., Torabi, S. F., Schroer, T. A., Berger, C. L., Lu, Y., Trybus, K. M. & Selvin, P. R., Nov 8 2013, In : Journal of Biological Chemistry. 288, 45, p. 32612-32621 10 p.

Research output: Contribution to journalArticle