Research Output 1981 2019

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2019

Allele-specific enhancer interaction at the Peg3 imprinted domain

Kim, J., Frey, W. D., Sharma, K., Ghimire, S., Teruyama, R. & Stubbs, L., Jan 1 2019, In : PloS one. 14, 10, e0224287.

Research output: Contribution to journalArticle

Open Access
Conformations
Brain
Animals
Genes
Alleles

A Mouse Mutation That Dysregulates Neighboring Galnt17 and Auts2 Genes Is Associated with Phenotypes Related to the Human AUTS2 Syndrome

Weisner, P. A., Chen, C. Y., Sun, Y., Yoo, J., Kao, W. C., Zhang, H., Baltz, E. T., Troy, J. M. & Stubbs, L., Nov 5 2019, In : G3 (Bethesda, Md.). 9, 11, p. 3891-3906 16 p.

Research output: Contribution to journalArticle

Open Access
Homozygote
Phenotype
Mutation
N-Acetylgalactosaminyltransferases
Pathology

An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages

Negi, S., Bolt, C. C., Zhang, H. & Stubbs, L. J., Feb 15 2019, In : Developmental Biology. 446, 2, p. 180-192 13 p.

Research output: Contribution to journalArticle

Cell Lineage
Chromatin
Prostate
Essential Genes
Ureter

Circadian rhythm of redox state regulates membrane excitability in hippocampal CA1 neurons

Naseri Kouzehgarani, G., Bothwell, M. Y. & Gillette, M. U., Jan 1 2019, (Accepted/In press) In : European Journal of Neuroscience.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Circadian Rhythm
Oxidation-Reduction
Neurons
Membranes

Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge

Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., Seward, C. H., Sloofman, L., Chandrasekaran, S., Bell, A. M., Stubbs, L., Robinson, G. E., Zhao, S. D. & Sinha, S., Jan 2019, In : Genes, Brain and Behavior. p. e12502

Research output: Contribution to journalArticle

Systems Analysis
Synaptic Transmission
Genetic Phenomena
Genes
Smegmamorpha

Epi-illumination gradient light interference microscopy for imaging opaque structures

Kandel, M. E., Hu, C., Naseri Kouzehgarani, G., Min, E., Sullivan, K. M., Kong, H., Li, J. M., Robson, D. N., Gillette, M. U., Best-Popescu, C. & Popescu, G., Dec 1 2019, In : Nature communications. 10, 1, 4691.

Research output: Contribution to journalArticle

Open Access
Interference Microscopy
Light interference
Lighting
Microscopic examination
Multiple scattering

Ex vivo eye tissue culture methods for xenopus

Henry, J. J., Perry, K. J. & Hamilton, P. W., Apr 2019, In : Cold Spring Harbor protocols. 2019, 4, p. 274-278 5 p.

Research output: Contribution to journalArticle

Tissue culture
Xenopus
Lenses
Tissue
Regeneration

Graphene oxide substrates with N-cadherin stimulates neuronal growth and intracellular transport

Qin, E. C., Kandel, M. E., Liamas, E., Shah, T. B., Kim, C., Kaufman, C. D., Zhang, Z. J., Popescu, G., Gillette, M. L., Leckband, D. E. & Kong, H. J., May 2019, In : Acta Biomaterialia. 90, p. 412-423 12 p.

Research output: Contribution to journalArticle

Graphite
Cadherins
Oxides
Graphene
Neurons

Honey bee neurogenomic responses to affiliative and agonistic social interactions

Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Corona, F., Cash-Ahmed, A. C., Seward, C. H., Chandrasekaran, S., Stubbs, L. J. & Robinson, G. E., Jan 2019, In : Genes, Brain and Behavior. 18, 1, e12509.

Research output: Contribution to journalArticle

Honey
Bees
Interpersonal Relations
Nursing
Mushroom Bodies

Immune system-mediated atherosclerosis caused by deficiency of long non-coding RNA MALAT1 in ApoE-/- mice

Gast, M., Rauch, B. H., Nakagawa, S., Haghikia, A., Jasina, A., Haas, J., Nath, N., Jensen, L., Stroux, A., Böhm, A., Friebel, J., Rauch, U., Skurk, C., Blankenberg, S., Zeller, T., Kannanganattu, P. K., Meder, B., Kuss, A., Landmesser, U. & Poller, W., Feb 1 2019, In : Cardiovascular research. 115, 2, p. 302-314 13 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
Apolipoproteins E
Immune System
Atherosclerosis
Neoplasm Metastasis

Lack of muscle mTOR kinase activity causes early onset myopathy and compromises whole-body homeostasis

Zhang, Q., Duplany, A., Moncollin, V., Mouradian, S., Goillot, E., Mazelin, L., Gauthier, K., Streichenberger, N., Angleraux, C., Chen, J., Ding, S., Schaeffer, L. & Gangloff, Y. G., Feb 2019, In : Journal of Cachexia, Sarcopenia and Muscle. 10, 1, p. 35-53 19 p.

Research output: Contribution to journalArticle

Muscular Diseases
Sirolimus
Homeostasis
Phosphotransferases
Muscles

Methods for examining lens regeneration in xenopus

Henry, J. J., Perry, K. J. & Hamilton, P. W., Apr 2019, In : Cold Spring Harbor protocols. 2019, 4, p. 268-273 6 p.

Research output: Contribution to journalArticle

Xenopus
Lenses
Regeneration
Corneal Epithelium
Anura

Molecular markers for corneal epithelial cells in larval vs. adult Xenopus frogs

Sonam, S., Srnak, J. A., Perry, K. J. & Henry, J. J., Jul 2019, In : Experimental Eye Research. 184, p. 107-125 19 p.

Research output: Contribution to journalArticle

Xenopus
Anura
Cornea
Stem Cells
Epithelial Cells

Multiple kinesins induce tension for smooth cargo transport

Tjioe, M., Shukla, S., Vaidya, R., Troitskaia, A., Bookwalter, C., Trybus, K. M., Chemla, Y. R. & Selvin, P. R., Oct 2019, In : eLife. 8, e50974.

Research output: Contribution to journalArticle

Open Access
Kinesin
Microtubules
Assays
Molecules

Nontranslational function of leucyl-tRNA synthetase regulates myogenic differentiation and skeletal muscle regeneration

Son, K., You, J. S., Yoon, M. S., Dai, C., Kim, J. H., Khanna, N., Banerjee, A., Martinis, S. A., Han, G., Han, J. M., Kim, S. & Chen, J., May 1 2019, In : Journal of Clinical Investigation. 129, 5, p. 2088-2093 6 p.

Research output: Contribution to journalArticle

Open Access
Amino Acyl-tRNA Synthetases
Regeneration
Skeletal Muscle
Muscle Development
Transfer RNA Aminoacylation

Nuclear speckle fusion via long-range directional motion regulates speckle morphology after transcriptional inhibition

Kim, J., Han, K. Y., Khanna, N., Ha, T. & Belmont, A. S., Apr 1 2019, In : Journal of cell science. 132, 8, 226563.

Research output: Contribution to journalArticle

Open Access
Nuclear Fusion
Articular Range of Motion
Chromatin
Actins
Hot Temperature

Optical excitation and detection of neuronal activity

Hu, C., Sam, R., Shan, M., Nastasa, V., Wang, M., Kim, T., Gillette, M., Sengupta, P. & Popescu, G., Mar 2019, In : Journal of Biophotonics. 12, 3, e201800269.

Research output: Contribution to journalArticle

Optogenetics
Photoexcitation
stimulation
Electrophysiology
Imaging techniques

Photon-separation to enhance the spatial resolution of pulsed STED microscopy

Tortarolo, G., Sun, Y., Teng, K. W., Ishitsuka, Y., Lanzanó, L., Selvin, P. R., Barbieri, B., Diaspro, A. & Vicidomini, G., Jan 28 2019, In : Nanoscale. 11, 4, p. 1754-1761 8 p.

Research output: Contribution to journalArticle

Stimulated emission
Microscopic examination
Photons
Tuning
Laser beams
Depressaria pastinacella
Pastinaca
psoralens
substrate specificity
Substrate Specificity

The nuclear and DNA-associated molecular chaperone network

Gvozdenov, Z., Kolhe, J. & Freeman, B. C., Oct 2019, In : Cold Spring Harbor Perspectives in Biology. 11, 10, a034009.

Research output: Contribution to journalArticle

Open Access
Molecular Chaperones
DNA
Intranuclear Inclusion Bodies
Proteins
Proteome

The role of sensory innervation in cornea-lens regeneration

Perry, K. J., Hamilton, P. W., Sonam, S., Singh, R. & Henry, J. J., Jul 2019, In : Developmental Dynamics. 248, 7, p. 530-544 15 p.

Research output: Contribution to journalArticle

Cornea
Lenses
Regeneration
Nerve Growth Factors
Substance P

Understanding cornea homeostasis and wound healing using a novel model of stem cell deficiency in Xenopus

Adil, M. T., Simons, C. M., Sonam, S. & Henry, J. J., Oct 2019, In : Experimental Eye Research. 187, 107767.

Research output: Contribution to journalArticle

Xenopus
Wound Healing
Cornea
Homeostasis
Stem Cells
2018

Aligning Synthetic Hippocampal Neural Circuits via Self-Rolled-Up Silicon Nitride Microtube Arrays

Cangellaris, O. V., Corbin, E. A., Froeter, P., Michaels, J. A., Li, X. & Gillette, M. U., Oct 24 2018, In : ACS Applied Materials and Interfaces. 10, 42, p. 35705-35714 10 p.

Research output: Contribution to journalArticle

Silicon nitride
Neurons
Networks (circuits)
Neurodegenerative diseases
Substrates

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Saccharum
Alleles
Genome
Chromosomes, Human, Pair 4
Disease Resistance

A natural antisense lncRNA controls breast cancer progression by promoting tumor suppressor gene mRNA stability

Jadaliha, M., Gholamalamdari, O., Tang, W., Zhang, Y., Petracovici, A., Hao, Q., Tariq, A., Kim, T. G., Holton, S. E., Singh, D. K., Li, X. L., Freier, S. M., Ambs, S., Bhargava, R., Lal, A., Prasanth, S. G., Ma, J. & Kannanganattu, P. K., Nov 2018, In : PLoS genetics. 14, 11, e1007802.

Research output: Contribution to journalArticle

Long Noncoding RNA
tumor suppressor genes
RNA Stability
Tumor Suppressor Genes
tumor

Cell fate changes induced by a Distal-less enhancer-trap transgene in the Drosophila antennal imaginal disc

Abidi, S. N. F. & Smith-Bolton, R. K., Dec 1 2018, In : Scientific reports. 8, 1, 4950.

Research output: Contribution to journalArticle

Imaginal Discs
Transgenes
Drosophila
Mutation
Drosophila melanogaster

CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci

Tasan, I., Sustackova, G., Zhang, L., Kim, J., Sivaguru, M., HamediRad, M., Wang, Y., Genova, J., Ma, J., Belmont, A. S. & Zhao, H., Jan 1 2018, In : Nucleic acids research. 46, 17, e100.

Research output: Contribution to journalArticle

CRISPR-Associated Proteins
Clustered Regularly Interspaced Short Palindromic Repeats
Nucleic Acid Repetitive Sequences
Genome
HCT116 Cells

Delivery of Fluorescent Probes Using Streptolysin O for Fluorescence Microscopy of Living Cells

Teng, K. W., Ren, P. & Selvin, P. R., Jan 1 2018, (Accepted/In press) In : Current Protocols in Protein Science.

Research output: Contribution to journalArticle

Fluorescence microscopy
Fluorescent Dyes
Fluorescence Microscopy
Fluorophores
Cells

Development of Concurrent Retinotopic Maps in the Fly Motion Detection Circuit

Pinto-Teixeira, F., Koo, C., Rossi, A. M., Neriec, N., Bertet, C., Li, X., Del-Valle-Rodriguez, A. & Desplan, C., Apr 5 2018, In : Cell. 173, 2, p. 485-498.e11

Research output: Contribution to journalArticle

Neurons
Networks (circuits)
Brain
Motion Perception
Birth Order

Ectomesoderm and epithelial–mesenchymal transition-related genes in spiralian development

Osborne, C. C., Perry, K. J., Shankland, M. & Henry, J. J., Oct 2018, In : Developmental Dynamics. 247, 10, p. 1097-1120 24 p.

Research output: Contribution to journalArticle

Mollusca
Gene Regulatory Networks
Genes
Platyhelminths
Gastrula

Effects of rapamycin on growth hormone receptor knockout mice

Fang, Y., Hill, C. M., Darcy, J., Reyes-Ordoñez, A., Arauz, E., McFadden, S., Zhang, C., Osland, J., Gao, J., Zhang, T., Frank, S. J., Javors, M. A., Yuan, R., Kopchick, J. J., Sun, L. Y., Chen, J. & Bartke, A., Feb 13 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 7, p. E1495-E1503

Research output: Contribution to journalArticle

Somatotropin Receptors
Sirolimus
Knockout Mice
Raptors
Homeostasis

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. L., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journalArticle

Circadian Clocks
Neuropeptides
Suprachiasmatic Nucleus
Clocks
Optics

Helicobacter pylori Infection Modulates Host Cell Metabolism through VacA-Dependent Inhibition of mTORC1

Kim, I. J., Lee, J., Oh, S. J., Yoon, M. S., Jang, S. S., Holland, R. L., Reno, M. L., Hamad, M. N., Maeda, T., Chung, H. J., Chen, J. & Blanke, S. R., May 9 2018, In : Cell Host and Microbe. 23, 5, p. 583-593.e8

Research output: Contribution to journalArticle

Helicobacter Infections
Helicobacter pylori
Autophagy
Amino Acids
Mitochondria

Lanthionine synthetase C-like protein 2 (LanCL2) is important for adipogenic differentiation

Dutta, D., Lai, K. Y., Reyes-Ordoñez, A., Chen, J. & van der Donk, W. A., Jan 1 2018, In : Journal of Lipid Research. 59, 8, p. 1433-1445 13 p.

Research output: Contribution to journalArticle

Peroxisome Proliferator-Activated Receptors
Ligases
Protein C
CCAAT-Enhancer-Binding Proteins
Proteins

Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid Glycoside

Petronikolou, N., Hollatz, A. J., Schuler, M. A. & Nair, S. K., Apr 16 2018, In : ChemBioChem. 19, 8, p. 784-788 5 p.

Research output: Contribution to journalArticle

Iridoid Glycosides
Methylation
Methyltransferases
Secologanin Tryptamine Alkaloids
Indole Alkaloids

Magnetic Cytoskeleton Affinity Purification of Microtubule Motors Conjugated to Quantum Dots

Tjioe, M., Ryoo, H., Ishitsuka, Y., Ge, P., Bookwalter, C., Huynh, W., McKenney, R. J., Trybus, K. M. & Selvin, P. R., Jul 18 2018, In : Bioconjugate Chemistry. 29, 7, p. 2278-2286 9 p.

Research output: Contribution to journalArticle

Quantum Dots
Cytoskeleton
Microtubules
Semiconductor quantum dots
Purification

Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler

Chen, Y., Zhang, Y., Wang, Y., Zhang, L., Brinkman, E. K., Adam, S. A., Goldman, R., Van Steensel, B., Ma, J. & Belmont, A. S., Nov 1 2018, In : Journal of Cell Biology. 217, 11, p. 4025-4048 24 p.

Research output: Contribution to journalArticle

Chromosome Mapping
Genome
Chromosomes
Nuclear Lamina
Genes

MIR100 host gene-encoded lncRNAs regulate cell cycle by modulating the interaction between HuR and its target mRNAs

Sun, Q., Tripathi, V., Yoon, J. H., Singh, D. K., Hao, Q., Min, K. W., Davila, S., Zealy, R. W., Li, X. L., Polycarpou-Schwarz, M., Lehrmann, E., Zhang, Y., Becker, K. G., Freier, S. M., Zhu, Y., Diederichs, S., Prasanth, S. G., Lal, A., Gorospe, M. & Prasanth, K. V., Jan 1 2018, In : Nucleic acids research. 46, 19, p. 10405-10416 12 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
MicroRNAs
Cell Cycle
Messenger RNA
Genes

Molecular, phylogenetic and developmental analyses of Sall proteins in bilaterians

Lorente-Sorolla, J., Truchado-Garcia, M., Perry, K. J., Henry, J. Q. & Grande, C., Apr 10 2018, In : EvoDevo. 9, 1, 9.

Research output: Contribution to journalArticle

Zinc Fingers
Snails
zinc finger motif
phylogenetics
protein

Multimodal Chemical Analysis of the Brain by High Mass Resolution Mass Spectrometry and Infrared Spectroscopic Imaging

Neumann, E. K., Comi, T. J., Spegazzini, N., Mitchell, J. W., Rubakhin, S. S., Gillette, M. U., Bhargava, R. & Sweedler, J. V., Oct 2 2018, In : Analytical chemistry. 90, 19, p. 11572-11580 9 p.

Research output: Contribution to journalArticle

Mass spectrometry
Brain
Infrared radiation
Imaging techniques
Chemical analysis

Mutually inhibitory Ras-PI(3,4)P 2 feedback loops mediate cell migration

Li, X., Edwards, M., Swaney, K. F., Singh, N., Bhattacharya, S., Borleis, J., Long, Y., Iglesias, P. A., Chen, J. & Devreotes, P. N., Sep 25 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 39, p. E9125-E9134

Research output: Contribution to journalArticle

Cell Movement
Phosphoric Monoester Hydrolases
Physiological Phenomena
Chemotactic Factors
Cytoskeleton
Open Access
Actinin
Intercellular Junctions
Cadherins
Myosins
Epithelial Cells

NLRP12 promotes mouse neutrophil differentiation through regulation of non-canonical NF-κB and MAPKERK1/2 signaling

Wang, Q., Liu, F., Zhang, M., Zhou, P., Xu, C., Li, Y., Bian, L., Liu, Y., Yao, Y., Wang, F., Fang, Y. & Li, D., Jan 13 2018, In : International Journal of Biological Sciences. 14, 2, p. 147-155 9 p.

Research output: Contribution to journalArticle

Leucine
leucine
neutrophils
Neutrophils
Nucleotides

PCNA-mediated stabilization of E3 ligase RFWD3 at the replication fork is essential for DNA replication

Lin, Y. C., Wang, Y., Hsu, R., Giri, S., Wopat, S., Arif, M. K., Chakraborty, A., Kannanganattu, P. K. & Prasanth, S. G., Dec 26 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 52, p. 13282-13287 6 p.

Research output: Contribution to journalArticle

Ubiquitin-Protein Ligases
Proliferating Cell Nuclear Antigen
DNA Replication
Replication Protein A
S Phase

RNA helicase Mov10 is essential for gastrulation and central nervous system development

Skariah, G., Perry, K. J., Drnevich, J., Henry, J. J. & Ceman, S. S., Apr 2018, In : Developmental Dynamics. 247, 4, p. 660-671 12 p.

Research output: Contribution to journalArticle

RNA Helicases
Gastrulation
Central Nervous System
Xenopus
MicroRNAs

Stable and reproducible transgene expression independent of proliferative or differentiated state using BAC TG-EMBED

Chaturvedi, P., Zhao, B., Zimmerman, D. L. & Belmont, A. S., Aug 1 2018, In : Gene therapy. 25, 5, p. 376-391 16 p.

Research output: Contribution to journalArticle

Transgenes
Cell Differentiation
Chromosomes
NIH 3T3 Cells
Biotechnology

Structural Contributions to Hydrodynamic Diameter for Quantum Dots Optimized for Live-Cell Single-Molecule Tracking

Sheung, J. Y., Ge, P., Lim, S. J., Lee, S. H., Smith, A. M. & Selvin, P. R., Aug 2 2018, In : Journal of Physical Chemistry C. 122, 30, p. 17406-17412 7 p.

Research output: Contribution to journalArticle

Streptavidin
Semiconductor quantum dots
Hydrodynamics
hydrodynamics
quantum dots

The actin filament bundling protein α-actinin-4 actually suppresses actin stress fibers by permitting actin turnover

Kemp, J. P. & Brieher, W. M., Jan 1 2018, In : Journal of Biological Chemistry. 293, 37, p. 14520-14533 14 p.

Research output: Contribution to journalArticle

Actinin
Stress Fibers
Actins
Tropomyosin
Fibers

Thermal nanoimprint lithography for drift correction in super-resolution fluorescence microscopy

Youn, Y., Ishitsuka, Y., Jin, C. & Selvin, P. R., Jan 22 2018, In : Optics Express. 26, 2, p. 1670-1680 11 p.

Research output: Contribution to journalArticle

lithography
image resolution
biocompatibility
microscopy
fluorescence
2017

Active Antioxidizing Particles for On-Demand Pressure-Driven Molecular Release

Seo, Y., Leong, J., Teo, J. Y., Mitchell, J. W., Gillette, M. U., Han, B., Lee, J. & Kong, H., Oct 18 2017, In : ACS Applied Materials and Interfaces. 9, 41, p. 35642-35650 9 p.

Research output: Contribution to journalArticle

Nanosheets
Reactive Oxygen Species
Oxygen
Antioxidants
Tissue