Research Output

2020

An automated aquatic rack system for rearing marine invertebrates

Henry, J. Q., Lesoway, M. P. & Perry, K. J., May 4 2020, In : BMC biology. 18, 1, 46.

Research output: Contribution to journalArticle

Open Access

BMP signaling plays a role in anterior-neural/head development, but not organizer activity, in the gastropod Crepidula fornicata

Lyons, D. C., Anderson, K. J., Batzel, G. & Henry, J. Q., Jan 1 2020, (Accepted/In press) In : Developmental Biology.

Research output: Contribution to journalArticle

Open Access

Circadian rhythm of redox state regulates membrane excitability in hippocampal CA1 neurons

Naseri Kouzehgarani, G., Bothwell, M. Y. & Gillette, M. U., Jan 1 2020, In : European Journal of Neuroscience. 51, 1, p. 34-46 13 p.

Research output: Contribution to journalArticle

Emergence of functional neuromuscular junctions in an engineered, multicellular spinal cord-muscle bioactuator

Kaufman, C. D., Liu, S. C., Cvetkovic, C., Lee, C. A., Naseri Kouzehgarani, G., Gillette, R., Bashir, R. & Gillette, M. U., Jun 1 2020, In : Bioengineering. 4, 2, 026104.

Research output: Contribution to journalArticle

Open Access

Gene expression amplification by nuclear speckle association

Kim, J., Venkata, N. C., Gonzalez, G. A. H., Khanna, N. & Belmont, A. S., Jan 6 2020, In : Journal of Cell Biology. 219, 1

Research output: Contribution to journalArticle

Open Access

LncRNA-mediated regulation of SOX9 expression in basal subtype breast cancer cells

Tariq, A., Hao, Q., Sun, Q., Singh, D. K., Jadaliha, M., Zhang, Y., Chetlangia, N., Ma, J., Holton, S. E., Bhargava, R., Lal, A., Prasanth, S. G. & Prasanth, K. V., Jan 1 2020, In : RNA. 26, 2, p. 175-185 11 p.

Research output: Contribution to journalArticle

Mechanism of Long-Range Chromosome Motion Triggered by Gene Activation

Wang, A., Kolhe, J. A., Gioacchini, N., Baade, I., Brieher, W. M., Peterson, C. L. & Freeman, B. C., Feb 10 2020, In : Developmental cell. 52, 3, p. 309-320.e5

Research output: Contribution to journalArticle

Pin1 Binding to Phosphorylated PSD-95 Regulates the Number of Functional Excitatory Synapses

Delgado, J. Y., Nall, D. & Selvin, P. R., Mar 13 2020, In : Frontiers in Molecular Neuroscience. 13, 10.

Research output: Contribution to journalArticle

Open Access

Short-Wave Infrared Quantum Dots with Compact Sizes as Molecular Probes for Fluorescence Microscopy

Sarkar, S., Le, P., Geng, J., Liu, Y., Han, Z., Zahid, M. U., Nall, D., Youn, Y., Selvin, P. R. & Smith, A. M., Feb 19 2020, In : Journal of the American Chemical Society. 142, 7, p. 3449-3462 14 p.

Research output: Contribution to journalArticle

The FMRP-MOV10 complex: A translational regulatory switch modulated by G-Quadruplexes

Kenny, P. J., Kim, M., Skariah, G., Nielsen, J., Lannom, M. C. & Ceman, S., Jan 24 2020, In : Nucleic acids research. 48, 2, p. 862-878 17 p.

Research output: Contribution to journalArticle

Open Access
2019

Allele-specific enhancer interaction at the Peg3 imprinted domain

Kim, J., Frey, W. D., Sharma, K., Ghimire, S., Teruyama, R. & Stubbs, L., Jan 1 2019, In : PloS one. 14, 10, e0224287.

Research output: Contribution to journalArticle

Open Access

A mouse mutation that dysregulates neighboring GALNT17 and AUTS2 genes is associated with phenotypes related to the human AUTS2 syndrome

Weisner, P. A., Chen, C. Y., Sun, Y., Yoo, J., Kao, W. C., Zhang, H., Baltz, E. T., Troy, J. M. & Stubbs, L., Nov 1 2019, In : G3: Genes, Genomes, Genetics. 9, 11, p. 3891-3906 16 p.

Research output: Contribution to journalArticle

Open Access

An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages

Negi, S., Bolt, C. C., Zhang, H. & Stubbs, L., Feb 15 2019, In : Developmental Biology. 446, 2, p. 180-192 13 p.

Research output: Contribution to journalArticle

Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge

Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., Seward, C. H., Sloofman, L., Chandrasekaran, S., Bell, A. M., Stubbs, L., Robinson, G. E., Zhao, S. D. & Sinha, S., Jan 2019, In : Genes, Brain and Behavior. 18, 1, p. e12502 e12502.

Research output: Contribution to journalArticle

Epi-illumination gradient light interference microscopy for imaging opaque structures

Kandel, M. E., Hu, C., Naseri Kouzehgarani, G., Min, E., Sullivan, K. M., Kong, H., Li, J. M., Robson, D. N., Gillette, M. U., Best-Popescu, C. & Popescu, G., Dec 1 2019, In : Nature communications. 10, 1, 4691.

Research output: Contribution to journalArticle

Open Access

Ex vivo eye tissue culture methods for xenopus

Henry, J. J., Perry, K. J. & Hamilton, P. W., Apr 2019, In : Cold Spring Harbor protocols. 2019, 4, p. 274-278 5 p.

Research output: Contribution to journalArticle

Genome organization around nuclear speckles

Chen, Y. & Belmont, A. S., Apr 2019, In : Current Opinion in Genetics and Development. 55, p. 91-99 9 p.

Research output: Contribution to journalReview article

Graphene oxide substrates with N-cadherin stimulates neuronal growth and intracellular transport

Qin, E. C., Kandel, M. E., Liamas, E., Shah, T. B., Kim, C., Kaufman, C. D., Zhang, Z. J., Popescu, G., Gillette, M. U., Leckband, D. E. & Kong, H., May 2019, In : Acta Biomaterialia. 90, p. 412-423 12 p.

Research output: Contribution to journalArticle

Honey bee neurogenomic responses to affiliative and agonistic social interactions

Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Corona, F., Cash-Ahmed, A. C., Seward, C. H., Chandrasekaran, S., Stubbs, L. J. & Robinson, G. E., Jan 2019, In : Genes, Brain and Behavior. 18, 1, e12509.

Research output: Contribution to journalArticle

Immune system-mediated atherosclerosis caused by deficiency of long non-coding RNA MALAT1 in ApoE-/- mice

Gast, M., Rauch, B. H., Nakagawa, S., Haghikia, A., Jasina, A., Haas, J., Nath, N., Jensen, L., Stroux, A., Böhm, A., Friebel, J., Rauch, U., Skurk, C., Blankenberg, S., Zeller, T., Prasanth, K. V., Meder, B., Kuss, A., Landmesser, U. & Poller, W., Feb 1 2019, In : Cardiovascular research. 115, 2, p. 302-314 13 p.

Research output: Contribution to journalArticle

Lack of muscle mTOR kinase activity causes early onset myopathy and compromises whole-body homeostasis

Zhang, Q., Duplany, A., Moncollin, V., Mouradian, S., Goillot, E., Mazelin, L., Gauthier, K., Streichenberger, N., Angleraux, C., Chen, J., Ding, S., Schaeffer, L. & Gangloff, Y. G., Feb 2019, In : Journal of Cachexia, Sarcopenia and Muscle. 10, 1, p. 35-53 19 p.

Research output: Contribution to journalArticle

Lentivirus-mediated RNAi in skeletal myogenesis

Kim, D., Reyes-Ordoñez, A. & Chen, J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 95-110 16 p. (Methods in Molecular Biology; vol. 1889).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanical Networks Have Robustness Built into Their Topology, Too

Sokac, A. M., Sep 9 2019, In : Developmental cell. 50, 5, p. 527-528 2 p.

Research output: Contribution to journalShort survey

Methods for examining lens regeneration in xenopus

Henry, J. J., Perry, K. J. & Hamilton, P. W., Apr 2019, In : Cold Spring Harbor protocols. 2019, 4, p. 268-273 6 p.

Research output: Contribution to journalArticle

Molecular markers for corneal epithelial cells in larval vs. adult Xenopus frogs

Sonam, S., Srnak, J. A., Perry, K. J. & Henry, J. J., Jul 2019, In : Experimental Eye Research. 184, p. 107-125 19 p.

Research output: Contribution to journalArticle

Multiple kinesins induce tension for smooth cargo transport

Tjioe, M., Shukla, S., Vaidya, R., Troitskaia, A., Bookwalter, C., Trybus, K. M., Chemla, Y. R. & Selvin, P. R., Oct 2019, In : eLife. 8, e50974.

Research output: Contribution to journalArticle

Open Access

Nanodiscs as a New Tool to Examine Lipid–Protein Interactions

Denisov, I. G., Schuler, M. A. & Sligar, S. G., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 645-671 27 p. (Methods in Molecular Biology; vol. 2003).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nontranslational function of leucyl-tRNA synthetase regulates myogenic differentiation and skeletal muscle regeneration

Son, K., You, J. S., Yoon, M. S., Dai, C., Kim, J. H., Khanna, N., Banerjee, A., Martinis, S. A., Han, G., Han, J. M., Kim, S. & Chen, J., May 1 2019, In : Journal of Clinical Investigation. 129, 5, p. 2088-2093 6 p.

Research output: Contribution to journalArticle

Open Access

Nuclear speckle fusion via long-range directional motion regulates speckle morphology after transcriptional inhibition

Kim, J., Han, K. Y., Khanna, N., Ha, T. & Belmont, A. S., Apr 1 2019, In : Journal of cell science. 132, 8, 226563.

Research output: Contribution to journalArticle

Open Access

Optical excitation and detection of neuronal activity

Hu, C., Sam, R., Shan, M., Nastasa, V., Wang, M., Kim, T., Gillette, M., Sengupta, P. & Popescu, G., Mar 2019, In : Journal of Biophotonics. 12, 3, e201800269.

Research output: Contribution to journalArticle

Photon-separation to enhance the spatial resolution of pulsed STED microscopy

Tortarolo, G., Sun, Y., Teng, K. W., Ishitsuka, Y., Lanzanó, L., Selvin, P. R., Barbieri, B., Diaspro, A. & Vicidomini, G., Jan 28 2019, In : Nanoscale. 11, 4, p. 1754-1761 8 p.

Research output: Contribution to journalArticle

Pituitary Adenylate Cyclase-Activating Peptide (PACAP)-Glutamate Co-transmission Drives Circadian Phase-Advancing Responses to Intrinsically Photosensitive Retinal Ganglion Cell Projections by Suprachiasmatic Nucleus

Lindberg, P. T., Mitchell, J. W., Burgoon, P. W., Beaulé, C., Weihe, E., Schäfer, M. K. H., Eiden, L. E., Jiang, S. Z. & Gillette, M. U., Dec 6 2019, In : Frontiers in Neuroscience. 13, 1281.

Research output: Contribution to journalArticle

Open Access

Reactive oxygen species-responsive drug delivery systems for the treatment of neurodegenerative diseases

Ballance, W. C., Qin, E. C., Chung, H. J., Gillette, M. U. & Kong, H., Oct 2019, In : Biomaterials. 217, 119292.

Research output: Contribution to journalReview article

Sex Determination, Sexual Development, and Sex Change in Slipper Snails

Lesoway, M. P. & Henry, J. Q., Jan 1 2019, Results and Problems in Cell Differentiation. Springer-Verlag Berlin Heidelberg, p. 155-182 28 p. (Results and Problems in Cell Differentiation; vol. 68).

Research output: Chapter in Book/Report/Conference proceedingChapter

The Hsp90 Molecular Chaperone Regulates the Transcription Factor Network Controlling Chromatin Accessibility

Gvozdenov, Z., Bendix, L. D., Kolhe, J. & Freeman, B. C., Dec 6 2019, In : Journal of Molecular Biology. 431, 24, p. 4993-5003 11 p.

Research output: Contribution to journalArticle

The nuclear and DNA-associated molecular chaperone network

Gvozdenov, Z., Kolhe, J. & Freeman, B. C., Oct 2019, In : Cold Spring Harbor Perspectives in Biology. 11, 10, a034009.

Research output: Contribution to journalArticle

Open Access

The role of sensory innervation in cornea-lens regeneration

Perry, K. J., Hamilton, P. W., Sonam, S., Singh, R. & Henry, J. J., Jul 2019, In : Developmental Dynamics. 248, 7, p. 530-544 15 p.

Research output: Contribution to journalArticle

The SPLIT approach for enhancing the spatial resolution in pulsed STED microscopy with FastFLIM and phasor plots

Tortarolo, G., Sun, Y., Shah, S., Barbieri, B., Teng, K. W., Ishitsuka, Y., Selvin, P. R., Lanzanò, L., Diaspro, A. & Vicidomini, G., Jan 1 2019, Multiphoton Microscopy in the Biomedical Sciences XIX. Periasamy, A., So, P. T. C. & Konig, K. (eds.). SPIE, 108820I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10882).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Understanding cornea homeostasis and wound healing using a novel model of stem cell deficiency in Xenopus

Adil, M. T., Simons, C. M., Sonam, S. & Henry, J. J., Oct 2019, In : Experimental Eye Research. 187, 107767.

Research output: Contribution to journalArticle

2018

Aligning Synthetic Hippocampal Neural Circuits via Self-Rolled-Up Silicon Nitride Microtube Arrays

Cangellaris, O. V., Corbin, E. A., Froeter, P., Michaels, J. A., Li, X. & Gillette, M. U., Oct 24 2018, In : ACS Applied Materials and Interfaces. 10, 42, p. 35705-35714 10 p.

Research output: Contribution to journalArticle

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

A natural antisense lncRNA controls breast cancer progression by promoting tumor suppressor gene mRNA stability

Jadaliha, M., Gholamalamdari, O., Tang, W., Zhang, Y., Petracovici, A., Hao, Q., Tariq, A., Kim, T. G., Holton, S. E., Singh, D. K., Li, X. L., Freier, S. M., Ambs, S., Bhargava, R., Lal, A., Prasanth, S. G., Ma, J. & Prasanth, K. V., Nov 2018, In : PLoS genetics. 14, 11, e1007802.

Research output: Contribution to journalArticle

Biomaterials for enhancing neuronal repair

Cangellaris, O. V. & Gillette, M. U., Apr 10 2018, In : Frontiers in Materials. 5, 21.

Research output: Contribution to journalShort survey

Open Access

CAMP, Ca2+, pHi, and NO Regulate H-like Cation Channels That Underlie Feeding and Locomotion in the Predatory Sea Slug Pleurobranchaea californica

Green, D. J., Huang, R. C., Sudlow, L., Hatcher, N., Potgieter, K., McCrohan, C., Lee, C., Romanova, E. V., Sweedler, J. V., Gillette, M. L. U. & Gillette, R., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 1986-1993 8 p.

Research output: Contribution to journalReview article

Open Access

Cell fate changes induced by a Distal-less enhancer-trap transgene in the Drosophila antennal imaginal disc

Abidi, S. N. F. & Smith-Bolton, R. K., Dec 1 2018, In : Scientific reports. 8, 1, 4950.

Research output: Contribution to journalArticle

Circadian redox rhythms in the regulation of neuronal excitability

Bothwell, M. Y. & Gillette, M. U., May 1 2018, In : Free Radical Biology and Medicine. 119, p. 45-55 11 p.

Research output: Contribution to journalReview article