Research Output 1977 2020

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Review article
2016

Engineering Synthetic Gene Circuits in Living Cells with CRISPR Technology

Jusiak, B., Cleto, S., Perez-Piñera, P. & Lu, T. K., Jul 1 2016, In : Trends in Biotechnology. 34, 7, p. 535-547 13 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Synthetic Genes
Gene Regulatory Networks
Genes
Cells

Exercise and gut immune function: Evidence of alterations in colon immune cell homeostasis and microbiome characteristics with exercise training

Cook, M. D., Allen, J. M., Pence, B. D., Wallig, M. A., Gaskins, H. R., White, B. A. & Woods, J. A., Feb 1 2016, In : Immunology and Cell Biology. 94, 2, p. 158-163 6 p.

Research output: Contribution to journalReview article

Microbiota
Colon
Homeostasis
Dysbiosis
Exercise

Family correlates of childhood binge eating: A systematic review

Saltzman, J. A. & Liechty, J. M., Aug 1 2016, In : Eating Behaviors. 22, p. 62-71 10 p.

Research output: Contribution to journalReview article

Bulimia
Weights and Measures
Binge-Eating Disorder
Education
Thinness

From infancy to aging: Biological and behavioral modifiers of Fetuin-A

Robinson, K. N. & Teran-Garcia, M., May 1 2016, In : Biochimie. 124, p. 141-149 9 p.

Research output: Contribution to journalReview article

alpha-2-HS-Glycoprotein
Aging of materials
Life Cycle Stages
Pharmacological Biomarkers
Life cycle

Gut microbiota: Modulation of host physiology in obesity

Nehra, V., Allen, J. M., Mailing, L. J., Kashyap, P. C. & Woods, J. A., Sep 2016, In : Physiology. 31, 5, p. 327-335 9 p.

Research output: Contribution to journalReview article

Microbiota
Obesity
Dysbiosis
Symbiosis
Adiposity

Impact of early gut microbiota on immune and metabolic development and function

Wang, M., Siegel, M. H. & Donovan, S. M., Dec 1 2016, In : Seminars in Fetal and Neonatal Medicine. 21, 6, p. 380-387 8 p.

Research output: Contribution to journalReview article

Prebiotics
Microbiota
Metabolic Diseases
Immune System Diseases
Probiotics

Impact of Obstructive Sleep Apnea on Neurocognitive Function and Impact of Continuous Positive Air Pressure

Davies, C. R. & Harrington, J. J., Sep 1 2016, In : Sleep Medicine Clinics. 11, 3, p. 287-298 12 p.

Research output: Contribution to journalReview article

Air Pressure
Obstructive Sleep Apnea
Diffusion Tensor Imaging
Sleep Deprivation
Executive Function

Influence of exercise and aging on extracellular matrix composition in the skeletal muscle stem cell niche

Garg, K. & Boppart, M. D., Nov 2016, In : Journal of Applied Physiology. 121, 5, p. 1053-1058 6 p.

Research output: Contribution to journalReview article

Stem Cell Niche
Muscle Cells
Extracellular Matrix
Skeletal Muscle
Stem Cells

Magnetomotive Optical Coherence Elastography for Magnetic Hyperthermia Dosimetry Based on Dynamic Tissue Biomechanics

Huang, P. C., Pande, P., Ahmad, A., Marjanovic, M., Spillman, D. R., Odintsov, B. & Boppart, S. A., Jul 2016, In : IEEE Journal of Selected Topics in Quantum Electronics. 22, 4, 7355327.

Research output: Contribution to journalReview article

biodynamics
Biomechanics
hyperthermia
Dosimetry
dosimeters

Medical diagnostics with mobile devices: Comparison of intrinsic and extrinsic sensing

Kwon, L., Long, K. D., Wan, Y., Yu, H. & Cunningham, B. T., May 1 2016, In : Biotechnology Advances. 34, 3, p. 291-304 14 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Handheld Computers
Precision Medicine
Mobile devices
Equipment and Supplies

Modelling of bone fracture and strength at different length scales: A review

Sabet, F. A., Najafi, A. R., Hamed, E. & Jasiuk, I., Feb 6 2016, In : Interface Focus. 6, 1, 20150055.

Research output: Contribution to journalReview article

Bone Fractures
Bone
Bone and Bones
Bone Diseases
Osteoporosis

NanoEHS - Defining fundamental science needs: No easy feat when the simple itself is complex

Grassian, V. H., Haes, A. J., Mudunkotuwa, I. A., Demokritou, P., Kane, A. B., Murphy, C. J., Hutchison, J. E., Isaacs, J. A., Jun, Y. S., Karn, B., Khondaker, S. I., Larsen, S. C., Lau, B. L. T., Pettibone, J. M., Sadik, O. A., Saleh, N. B. & Teague, C., Feb 1 2016, In : Environmental Science: Nano. 3, 1, p. 15-27 13 p.

Research output: Contribution to journalReview article

nanotechnology
Nanostructured materials
Nanotechnology
catalysis
information technology

New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products

Ortega, M. A. & van der Donk, W. A., Jan 21 2016, In : Cell chemical biology. 23, 1, p. 31-44 14 p.

Research output: Contribution to journalReview article

Biosynthesis
Biological Products
Synthetic Biology
Peptides
Biosynthetic Pathways

On Priming Action: Conclusions from a Meta-Analysis of the Behavioral Effects of Incidentally-Presented Words

Weingarten, E., Chen, Q., McAdams, M., Yi, J., Hepler, J. & Albarracin, D., Dec 1 2016, In : Current Opinion in Psychology. 12, p. 53-57 5 p.

Research output: Contribution to journalReview article

Meta-Analysis
Publications

Perspectives from man's best friend: National academy of medicine's workshop on comparative oncology

Leblanc, A. K., Breen, M., Choyke, P., Dewhirst, M., Fan, T. M., Gustafson, D. L., Helman, L. J., Kastan, M. B., Knapp, D. W., Levin, W. J., London, C., Mason, N., Mazcko, C., Olson, P. N., Page, R., Teicher, B. A., Thamm, D. H., Trent, J. M., Vail, D. M. & Khanna, C., Feb 3 2016, In : Science Translational Medicine. 8, 324, 324ps5.

Research output: Contribution to journalReview article

Medicine
Education
Research
Therapeutics
Surveys and Questionnaires

Polymers with autonomous life-cycle control

Patrick, J. F., Robb, M. J., Sottos, N. R., Moore, J. S. & White, S. R., Dec 14 2016, In : Nature. 540, 7633, p. 363-370 8 p.

Research output: Contribution to journalReview article

Life Cycle Stages
Tears
Polymers
Safety

Progesterone-Regulated Endometrial Factors Controlling Implantation

Bhurke, A. S., Bagchi, I. C. & Bagchi, M. K., Mar 1 2016, In : American Journal of Reproductive Immunology. 75, 3, p. 237-245 9 p.

Research output: Contribution to journalReview article

Progesterone Receptors
Progesterone
Protein Isoforms
Pregnancy
Critical Pathways

Quantitative imaging of cell membrane-associated effective mass density using Photonic Crystal Enhanced Microscopy (PCEM)

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A. & Cunningham, B. T., Nov 1 2016, In : Progress in Quantum Electronics. 50, p. 1-18 18 p.

Research output: Contribution to journalReview article

Cell membranes
Photonic crystals
Microscopic examination
photonics
microscopy

Quantum dot surface engineering: Toward inert fluorophores with compact size and bright, stable emission

Lim, S. J., Ma, L., Schleife, A. & Smith, A. M., Aug 1 2016, In : Coordination Chemistry Reviews. 320-321, p. 216-237 22 p.

Research output: Contribution to journalReview article

Fluorophores
Semiconductor quantum dots
quantum dots
engineering
Ligands

Recent Progress in Cancer Thermal Therapy Using Gold Nanoparticles

Abadeer, N. S. & Murphy, C. J., Mar 10 2016, In : Journal of Physical Chemistry C. 120, 9, p. 4691-4716 26 p.

Research output: Contribution to journalReview article

Gold
therapy
cancer
gold
Nanoparticles

Recommendations for real-time speech MRI

Lingala, S. G., Sutton, B. P., Miquel, M. E. & Nayak, K. S., Jan 1 2016, In : Journal of Magnetic Resonance Imaging. 43, 1, p. 28-44 17 p.

Research output: Contribution to journalReview article

Magnetic Resonance Imaging
Consensus
Los Angeles
Artifacts
Software
envelopes
Ultrasonics
Statistics
statistics
Imaging techniques

RNA secondary structure modulates FMRP’s bi-functional role in the microRNA pathway

Kenny, P. & Ceman, S., Jun 22 2016, In : International journal of molecular sciences. 17, 6, 985.

Research output: Contribution to journalReview article

RNA
MicroRNAs
Fragile X Mental Retardation Protein
proteins
Proteins

Single-cell analysis at the threshold

Chen, X., Love, J. C., Navin, N. E., Pachter, L., Stubbington, M. J. T., Svensson, V., Sweedler, J. V. & Teichmann, S. A., Nov 8 2016, In : Nature Biotechnology. 34, 11, p. 1111-1118 8 p.

Research output: Contribution to journalReview article

Microfluidics
Metabolomics

Standardization for natural product synthetic biology

Zhao, H. & Medema, M. H., Aug 2016, In : Natural Product Reports. 33, 8, p. 920-924 5 p.

Research output: Contribution to journalReview article

Synthetic Biology
Biological Products
Standardization
Multigene Family
Genes

Tandem reactions combining biocatalysts and chemical catalysts for asymmetric synthesis

Wang, Y. & Zhao, H., Dec 1 2016, In : Catalysts. 6, 12, 194.

Research output: Contribution to journalReview article

Biocatalysts
catalysts
Catalysis
Catalysts
catalysis

The enutrition academy: Supporting a newgeneration of nutritional scientistsaround the world

Geissler, C., Amuna, P., Kattelmann, K. K., Zotor, F. B. & Donovan, S. M., Jan 1 2016, In : Advances in Nutrition. 7, 1, p. 190-198 9 p.

Research output: Contribution to journalReview article

Learning
nutrition
learning
online courses
Nutritional Sciences

The many roles of glutamate in metabolism

Walker, M. C. & van der Donk, W. A., Mar 1 2016, In : Journal of Industrial Microbiology and Biotechnology. 43, 2-3, p. 419-430 12 p.

Research output: Contribution to journalReview article

Metabolism
Amino acids
Glutamic Acid
Bioremediation
Biosynthesis

Use of genome-editing tools to treat sickle cell disease

Tasan, I., Jain, S. & Zhao, H., Sep 1 2016, In : Human Genetics. 135, 9, p. 1011-1028 18 p.

Research output: Contribution to journalReview article

Sickle Cell Anemia
Globins
CRISPR-Associated Proteins
Therapeutics
Clustered Regularly Interspaced Short Palindromic Repeats
2017

A Closer Look at the Hippocampus and Memory

Voss, J. L., Bridge, D. J., Cohen, N. J. & Walker, J. A., Aug 2017, In : Trends in Cognitive Sciences. 21, 8, p. 577-588 12 p.

Research output: Contribution to journalReview article

Hippocampus
Brain

A New Era of Genome Integration - Simply Cut and Paste!

Liu, Z., Liang, Y., Ang, E. L. & Zhao, H., Apr 21 2017, In : ACS synthetic biology. 6, 4, p. 601-609 9 p.

Research output: Contribution to journalReview article

Ointments
Genes
Homologous Recombination
Genome
Synthetic Biology

Auditory thalamic circuits and GABAA receptor function: Putative mechanisms in tinnitus pathology

Caspary, D. M. & Llano, D. A., Jun 1 2017, In : Hearing Research. 349, p. 197-207 11 p.

Research output: Contribution to journalReview article

Tinnitus
GABA-A Receptors
Pathology
Geniculate Bodies
Auditory Cortex

Biohybrid actuators for robotics: A review of devices actuated by living cells

Ricotti, L., Trimmer, B., Feinberg, A. W., Raman, R., Parker, K. K., Bashir, R., Sitti, M., Martel, S., Dario, P. & Menciassi, A., Nov 22 2017, In : Science Robotics. 2, 12, eaaq0495.

Research output: Contribution to journalReview article

Robotics
Actuator
Actuators
Cells
Molecular Motor

Breaking the silence: new strategies for discovering novel natural products

Ren, H., Wang, B. & Zhao, H., Dec 1 2017, In : Current Opinion in Biotechnology. 48, p. 21-27 7 p.

Research output: Contribution to journalReview article

Biological Products
Multigene Family
Genes
Throughput
Pharmaceutical Preparations

Categorizing Cells on the Basis of their Chemical Profiles: Progress in Single-Cell Mass Spectrometry

Comi, T. J., Do, T. D., Rubakhin, S. S. & Sweedler, J. V., Mar 22 2017, In : Journal of the American Chemical Society. 139, 11, p. 3920-3929 10 p.

Research output: Contribution to journalReview article

Metabolites
Mass spectrometry
Amplification
amplification
Mass Spectrometry
Unsaturated Fats
Unsaturated Fatty Acids
Meta-Analysis
Fatty Acids
Obesity

Clinical translation of handheld optical coherence tomography: Practical considerations and recent advancements

Monroy, G. L., Won, J., Spillman, D. R., Dsouza, R. & Boppart, S. A., Dec 2017, In : Journal of biomedical optics. 22, 12, 121715.

Research output: Contribution to journalReview article

Optical tomography
tomography
form factors
photographic developers
ecosystems

Computational optical coherence tomography [invited]

Liu, Y. Z., South, F. A., Xu, Y., Scott Carney, P. & Boppart, S. A., Mar 1 2017, In : Biomedical Optics Express. 8, 3, p. 1549-1574 26 p.

Research output: Contribution to journalReview article

Optical Coherence Tomography
imaging techniques
tomography
Physics
aberration

Dynamic hippocampal and prefrontal contributions to memory processes and representations blur the boundaries of traditional cognitive domains

Rubin, R. D., Schwarb, H., Lucas, H. D., Dulas, M. R. & Cohen, N. J., Jul 12 2017, In : Brain Sciences. 7, 7, p. 1-17 17 p.

Research output: Contribution to journalReview article

Prefrontal Cortex
Hippocampus
Aptitude
Long-Term Memory
Social Behavior

Engineering biological systems using automated biofoundries

Chao, R., Mishra, S., Si, T. & Zhao, H., Jul 2017, In : Metabolic Engineering. 42, p. 98-108 11 p.

Research output: Contribution to journalReview article

Microbial Genetics
Bioengineering
Foundries
Biological systems
Biotechnology

Establishing the basis for mechanobiology-based physical therapy protocols to potentiate cellular healing and tissue regeneration

Ng, J. L., Kersh, M. E., Kilbreath, S. & Knothe Tate, M., Jun 6 2017, In : Frontiers in Physiology. 8, JUN, 303.

Research output: Contribution to journalReview article

Biophysics
Regeneration
Therapeutics
Exercise Therapy
Physical Therapists

Functional carbon nanodots for multiscale imaging and therapy

Ostadhossein, F. & Pan, D., May 1 2017, In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1436.

Research output: Contribution to journalReview article

Carbon
Imaging techniques
Drug Labeling
Nanostructures
Drug delivery

Go it alone: four-electron oxidations by mononuclear non-heme iron enzymes

Peck, S. C. & van der Donk, W. A., Apr 1 2017, In : Journal of Biological Inorganic Chemistry. 22, 2-3, p. 381-394 14 p.

Research output: Contribution to journalReview article

Iron
Electrons
Oxidation
Enzymes
Biosynthesis

Human milk oligosaccharides influence neonatal mucosal and systemic immunity

Donovan, S. M. & Comstock, S. S., Jan 1 2017, In : Annals of Nutrition and Metabolism. 69, 2, p. 42-51 10 p.

Research output: Contribution to journalReview article

Mucosal Immunity
Human Milk
Oligosaccharides
Infant Formula
Milk

Impact of peripheral hearing loss on top-down auditory processing

Lesicko, A. M. H. & Llano, D. A., Jan 1 2017, In : Hearing Research. 343, p. 4-13 10 p.

Research output: Contribution to journalReview article

Hearing Loss
Cues
Auditory Cortex
Cochlear Implants
Cochlea

Innovative techniques for evaluating behavioral nutrition interventions

Scherr, R. E., Laugero, K. D., Graham, D. J., Cunningham, B. T., Jahns, L., Lora, K. R., Reicks, M. & Mobley, A. R., Jan 1 2017, In : Advances in Nutrition. 8, 1, p. 113-125 13 p.

Research output: Contribution to journalReview article

nutritional intervention
Biosensing Techniques
Carotenoids
Research Personnel
biosensors

Integration of microfluidics in animal in vitro embryo production

Wheeler, M. B. & Rubessa, M., Jan 1 2017, In : Molecular Human Reproduction. 23, 4, p. 248-256 9 p.

Research output: Contribution to journalReview article

Microfluidics
Embryonic Structures
Mammalian Embryo
Livestock
Oocytes

Lessons learned from nanoscale specimens tested by MEMS-based apparatus

Elhebeary, M. & Saif, M. T. A., May 19 2017, In : Journal of Physics D: Applied Physics. 50, 24, 243001.

Research output: Contribution to journalReview article

lessons learned
microelectromechanical systems
MEMS
materials tests
prognosis

Mechanisms of Salmonella pathogenesis in animal models

Palmer, A. D. & Slauch, J. M., Nov 17 2017, In : Human and Ecological Risk Assessment. 23, 8, p. 1877-1892 16 p.

Research output: Contribution to journalReview article

Salmonella
Salmonella Infections
Animals
Animal Models
animal

Metabolic engineering of oleaginous yeasts for production of fuels and chemicals

Shi, S. & Zhao, H., Nov 8 2017, In : Frontiers in Microbiology. 8, NOV, 2185.

Research output: Contribution to journalReview article

Metabolic Engineering
Yeasts
Genetic Engineering
Lipomyces
Yarrowia