Research Output 1975 2020

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Review article

Mechanism and control of molecular energy flow: A modeling perspective

Gruebele, M., Mar 1 2003, In : Theoretical Chemistry Accounts. 109, 2, p. 53-63 11 p.

Research output: Contribution to journalReview article

Chemical reactions
Hamiltonians
Molecules
chemical reactions
energy

Mechanisms of Salmonella pathogenesis in animal models

Palmer, A. D. & Slauch, J. M., Nov 17 2017, In : Human and Ecological Risk Assessment. 23, 8, p. 1877-1892 16 p.

Research output: Contribution to journalReview article

Salmonella
Salmonella Infections
Animals
Animal Models
animal

Mechanobiology of the skeleton

Turner, C. H., Warden, S. J., Bellido, T., Plotkin, L. I., Kumar, N., Jasiuk, I., Danzig, J. & Robling, A. G., Apr 28 2009, In : Science Signaling. 2, 68, p. pt3

Research output: Contribution to journalReview article

Biophysics
Skeleton
Bone
Bone and Bones
Osteocytes

Medical diagnostics with mobile devices: Comparison of intrinsic and extrinsic sensing

Kwon, L., Long, K. D., Wan, Y., Yu, H. & Cunningham, B. T., May 1 2016, In : Biotechnology Advances. 34, 3, p. 291-304 14 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Handheld Computers
Precision Medicine
Mobile devices
Equipment and Supplies

Melatonin, sleep, and circadian rhythms: Rationale for development of specific melatonin agonists

Turek, F. W. & Gillette, M. L., Nov 1 2004, In : Sleep Medicine. 5, 6, p. 523-532 10 p.

Research output: Contribution to journalReview article

Melatonin
Circadian Rhythm
Sleep
Circadian Rhythm Sleep Disorders
Sleep Initiation and Maintenance Disorders

Message framing and medium considerations for recruiting newly eligible teen organ donor registrants

Quick, B. L., Bosch, D. & Morgan, S. E., Jun 1 2012, In : American Journal of Transplantation. 12, 6, p. 1593-1597 5 p.

Research output: Contribution to journalReview article

Pamphlets
Tissue Donors
Tissue and Organ Procurement
Postal Service
Marketing

Metabolic engineering of oleaginous yeasts for production of fuels and chemicals

Shi, S. & Zhao, H., Nov 8 2017, In : Frontiers in Microbiology. 8, NOV, 2185.

Research output: Contribution to journalReview article

Metabolic Engineering
Yeasts
Genetic Engineering
Lipomyces
Yarrowia

Micro- and nanotechnology for HIV/AIDS diagnostics in resource-limited settings

Damhorst, G. L., Watkins, N. N. & Bashir, R., Oct 1 2013, In : IEEE Transactions on Biomedical Engineering. 60, 3, p. 715-726 12 p.

Research output: Contribution to journalReview article

Viruses
Nanotechnology
T-cells
Immune system
Blood

Microenvironmental regulation of biomacromolecular therapies

Kong, H. J. & Mooney, D. J., Jun 1 2007, In : Nature Reviews Drug Discovery. 6, 6, p. 455-463 9 p.

Research output: Contribution to journalReview article

Extracellular Matrix
Therapeutics
Drug Carriers
Drug Delivery Systems
Cell Adhesion

Microfluidic systems for studying neurotransmitters and neurotransmission

Croushore, C. A. & Sweedler, J. V., May 7 2013, In : Lab on a Chip. 13, 9, p. 1666-1676 11 p.

Research output: Contribution to journalReview article

Microfluidics
Synaptic Transmission
Neurotransmitter Agents
Molecules
Cell signaling

Micro-managing the executioner: Pathogen targeting of mitochondria

Blanke, S. R., Feb 1 2005, In : Trends in Microbiology. 13, 2, p. 64-71 8 p.

Research output: Contribution to journalReview article

Mitochondria
Mitochondrial Membranes
Cell Survival
Cell Death
Eukaryotic Cells

Microplate-based, label-free detection of biomolecular interactions: Applications in proteomics

Cunningham, B. T. & Laing, L., Jul 7 2006, In : Expert Review of Proteomics. 3, 3, p. 271-281 11 p.

Research output: Contribution to journalReview article

Biosensing Techniques
Proteomics
Labels
Epitope Mapping
Biosensors

Microplate-based label-free screening on the BIND system

Cunningham, B. T. & Laing, L., Sep 1 2007, In : Bio Tech International. 19, 4, p. 14-18 5 p.

Research output: Contribution to journalReview article

Biosensing Techniques
Small Molecule Libraries
Technology
Proteins

MicroRNAs: Meta-controllers of gene expression in synaptic activity emerge as genetic and diagnostic markers of human disease

Ceman, S. & Saugstad, J., Apr 2011, In : Pharmacology and Therapeutics. 130, 1, p. 26-37 12 p.

Research output: Contribution to journalReview article

MicroRNAs
Genetic Markers
Gene Expression
RNA-Induced Silencing Complex
Untranslated RNA

MicroRNAs in skeletal myogenesis

Ge, Y. & Chen, J., Feb 1 2011, In : Cell Cycle. 10, 3, p. 441-448 8 p.

Research output: Contribution to journalReview article

Muscle Development
MicroRNAs
Skeletal Muscle
Naphazoline
Biological Phenomena

Microscale NMR

Wolters, A. M., Jayawickrama, D. A. & Sweedler, J. V., Oct 1 2002, In : Current Opinion in Chemical Biology. 6, 5, p. 711-716 6 p.

Research output: Contribution to journalReview article

Isotachophoresis
Nuclear magnetic resonance
Magnetic Resonance Spectroscopy
Cell Size
Nuclear magnetic resonance spectroscopy

Microscopic imaging and spectroscopy with scattered light

Boustany, N. N., Boppart, S. A. & Backman, V., Aug 15 2010, In : Annual Review of Biomedical Engineering. 12, p. 285-314 30 p.

Research output: Contribution to journalReview article

Spectrum Analysis
Spectroscopy
Tissue
Imaging techniques
Light

Microscopic view of lipids and their diverse biological functions

Wen, P. C., Mahinthichaichan, P., Trebesch, N., Jiang, T., Zhao, Z., Shinn, E., Wang, Y., Shekhar, M., Kapoor, K., Chan, C. K. & Tajkhorshid, E., Aug 2018, In : Current Opinion in Structural Biology. 51, p. 177-186 10 p.

Research output: Contribution to journalReview article

Lipids
Membranes
Physiological Phenomena
Lipid Bilayers
Hydrodynamics

Microsecond folding experiments and simulations: A match is made

Prigozhin, M. B. & Gruebele, M., Mar 14 2013, In : Physical Chemistry Chemical Physics. 15, 10, p. 3372-3388 17 p.

Research output: Contribution to journalReview article

folding
Protein folding
simulation
Experiments
Refining

Minimum Information about a Biosynthetic Gene cluster

Medema, M. H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J. B., Blin, K., De Bruijn, I., Chooi, Y. H., Claesen, J., Coates, R. C., Cruz-Morales, P., Duddela, S., Düsterhus, S., Edwards, D. J., Fewer, D. P., Garg, N., Geiger, C., Gomez-Escribano, J. P., Greule, A., Hadjithomas, M. & 134 others, Haines, A. S., Helfrich, E. J. N., Hillwig, M. L., Ishida, K., Jones, A. C., Jones, C. S., Jungmann, K., Kegler, C., Kim, H. U., Kötter, P., Krug, D., Masschelein, J., Melnik, A. V., Mantovani, S. M., Monroe, E. A., Moore, M., Moss, N., Nützmann, H. W., Pan, G., Pati, A., Petras, D., Reen, F. J., Rosconi, F., Rui, Z., Tian, Z., Tobias, N. J., Tsunematsu, Y., Wiemann, P., Wyckoff, E., Yan, X., Yim, G., Yu, F., Xie, Y., Aigle, B., Apel, A. K., Balibar, C. J., Balskus, E. P., Barona-Gómez, F., Bechthold, A., Bode, H. B., Borriss, R., Brady, S. F., Brakhage, A. A., Caffrey, P., Cheng, Y. Q., Clardy, J., Cox, R. J., De Mot, R., Donadio, S., Donia, M. S., Van Der Donk, W. A., Dorrestein, P. C., Doyle, S., Driessen, A. J. M., Ehling-Schulz, M., Entian, K. D., Fischbach, M. A., Gerwick, L., Gerwick, W. H., Gross, H., Gust, B., Hertweck, C., Höfte, M., Jensen, S. E., Ju, J., Katz, L., Kaysser, L., Klassen, J. L., Keller, N. P., Kormanec, J., Kuipers, O. P., Kuzuyama, T., Kyrpides, N. C., Kwon, H. J., Lautru, S., Lavigne, R., Lee, C. Y., Linquan, B., Liu, X., Liu, W., Luzhetskyy, A., Mahmud, T., Mast, Y., Méndez, C., Metsä-Ketelä, M., Micklefield, J., Mitchell, D. A., Moore, B. S., Moreira, L. M., Müller, R., Neilan, B. A., Nett, M., Nielsen, J., O'Gara, F., Oikawa, H., Osbourn, A., Osburne, M. S., Ostash, B., Payne, S. M., Pernodet, J. L., Petricek, M., Piel, J., Ploux, O., Raaijmakers, J. M., Salas, J. A., Schmitt, E. K., Scott, B., Seipke, R. F., Shen, B., Sherman, D. H., Sivonen, K., Smanski, M. J., Sosio, M., Stegmann, E., Süssmuth, R. D., Tahlan, K., Thomas, C. M., Tang, Y., Truman, A. W., Viaud, M., Walton, J. D., Walsh, C. T., Weber, T., Van Wezel, G. P., Wilkinson, B., Willey, J. M., Wohlleben, W., Wright, G. D., Ziemert, N., Zhang, C., Zotchev, S. B., Breitling, R., Takano, E. & Glöckner, F. O., Aug 18 2015, In : Nature chemical biology. 11, 9, p. 625-631 7 p.

Research output: Contribution to journalReview article

Multigene Family
Information Storage and Retrieval
Fungi
Bacteria

Minireview: Steroid-regulated paracrine mechanisms controlling implantation

Pawar, S., Hantak, A. M., Bagchi, I. C. & Bagchi, M. K., Sep 1 2014, In : Molecular endocrinology (Baltimore, Md.). 28, 9, p. 1408-1422 15 p.

Research output: Contribution to journalReview article

Progesterone Receptors
Estrogen Receptors
Embryonic Structures
Steroids
Pregnancy

Mitochondrial VDAC1: A key gatekeeper as potential therapeutic target

Camara, A. K. S., Zhou, Y. F., Wen, P. C., Tajkhorshid, E. & Kwok, W. M., Jun 30 2017, In : Frontiers in Physiology. 8, JUN, 460.

Research output: Contribution to journalReview article

Voltage-Dependent Anion Channel 1
Mitochondria
Therapeutics
Apoptosis
Apoptosis Regulatory Proteins

Modelling of bone fracture and strength at different length scales: A review

Sabet, F. A., Najafi, A. R., Hamed, E. & Jasiuk, I., Feb 6 2016, In : Interface Focus. 6, 1, 20150055.

Research output: Contribution to journalReview article

Bone Fractures
Bone
Bone and Bones
Bone Diseases
Osteoporosis

Models of antimicrobial resistance and foodborne illness: Examining assumptions and practical applications

Barber, D. A., Miller, G. Y. & McNamara, P. E., Apr 1 2003, In : Journal of Food Protection. 66, 4, p. 700-709 10 p.

Research output: Contribution to journalReview article

Foodborne Diseases
foodborne illness
antibiotic resistance
Food
quantitative risk assessment

Modification of the Genome of Domestic Animals

Lotti, S. N., Polkoff, K. M., Rubessa, M. & Wheeler, M. B., Jul 3 2017, In : Animal Biotechnology. 28, 3, p. 198-210 13 p.

Research output: Contribution to journalReview article

Domestic Animals
domestic animals
nucleases
Animals
Genes

Molecular cardiovascular imaging

Dobrucki, L. W. & Sinusas, A. J., Mar 2005, In : Current Cardiology Reports. 7, 2, p. 130-135 6 p.

Research output: Contribution to journalReview article

Molecular Imaging
Single-Photon Emission-Computed Tomography
Positron-Emission Tomography
Diagnostic Imaging
Radionuclide Imaging

Molecular dynamics simulations of membrane channels and transporters

Khalili-Araghi, F., Gumbart, J., Wen, P. C., Sotomayor, M., Tajkhorshid, E. & Schulten, K., Apr 1 2009, In : Current Opinion in Structural Biology. 19, 2, p. 128-137 10 p.

Research output: Contribution to journalReview article

Membrane Transport Proteins
Molecular Dynamics Simulation
Ion Channels
Aquaporins
Proteins

Molecular dynamics simulations of proteins in lipid bilayers

Gumbart, J., Wang, Y., Aksimentiev, A., Tajkhorshid, E. & Schulten, K., Aug 1 2005, In : Current Opinion in Structural Biology. 15, 4, p. 423-431 9 p.

Research output: Contribution to journalReview article

Lipid Bilayers
Molecular Dynamics Simulation
Membrane Proteins
Proteins
Aquaporins

Molluscum contagiosum virus: Persistence pays off

Randall, C. M. H. & Shisler, J. L., Jun 1 2013, In : Future Virology. 8, 6, p. 561-573 13 p.

Research output: Contribution to journalReview article

Molluscum contagiosum virus
Molluscum Contagiosum
Viruses
Monkeypox
Inflammation

Monitoring of quality of life in congestive heart failure populations

Berlin, R. B. & Schatz, B. R., Jan 1 2001, In : Congestive Heart Failure. 7, 1, p. 13-21+29

Research output: Contribution to journalReview article

Heart Failure
Quality of Life
Population
Health
Internet

Motor Learning in People with Multiple Sclerosis: A Systematic Review and Meta-analysis

Tablerion, J. M., Wood, T. A., Hsieh, K. L., Bishnoi, A., Sun, R., Hernandez, M., An, R. & Sosnoff, J. J., Jan 1 2019, (Accepted/In press) In : Archives of Physical Medicine and Rehabilitation.

Research output: Contribution to journalReview article

Multiple Sclerosis
Meta-Analysis
Learning
Motor Skills
Information Storage and Retrieval

mTOR signaling: PLD takes center stage

Sun, Y. & Chen, J., Oct 15 2008, In : Cell Cycle. 7, 20, p. 3118-3123 6 p.

Research output: Contribution to journalReview article

Phospholipase D
Sirolimus
Phosphatidic Acids
Biological Phenomena
Food

Multi-cellular engineered living systems: Building a community around responsible research on emergence

Sample, M., Boulicault, M., Allen, C., Bashir, R., Hyun, I., Levis, M., Lowenthal, C., Mertz, D., Montserrat, N., Palmer, M. J., Saha, K. & Zartman, J., Jul 10 2019, In : Biofabrication. 11, 4, 043001.

Research output: Contribution to journalReview article

Open Access
Research
Seizing
Organoids
Technology
Civil Rights

Multichannel spectrometers in animals

Cronin, T. W., Garcia, M. & Gruev, V., Mar 2018, In : Bioinspiration and Biomimetics. 13, 2, 021001.

Research output: Contribution to journalReview article

Imaging systems
Spectrometers
Animals
Biomimetics
Invertebrates

Multi-scale modelling of elastic moduli of trabecular bone

Hamed, E., Jasiuk, I., Yoo, A., Lee, Y. & Liszka, T., Jul 7 2012, In : Journal of the Royal Society Interface. 9, 72, p. 1654-1673 20 p.

Research output: Contribution to journalReview article

Elastic Modulus
Bone
Elastic moduli
Nanocomposites
Micromechanics

Multistep one-pot reactions combining biocatalysts and chemical catalysts for asymmetric synthesis

Denard, C. A., Hartwig, J. F. & Zhao, H., Dec 6 2013, In : ACS Catalysis. 3, 12, p. 2856-2864 9 p.

Research output: Contribution to journalReview article

Biocatalysts
Catalysts
Enzymes
Stereoselectivity
Regioselectivity

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

Pathogens
Bacteriophages
Biosensors
Light scattering
Explosions

NanoEHS - Defining fundamental science needs: No easy feat when the simple itself is complex

Grassian, V. H., Haes, A. J., Mudunkotuwa, I. A., Demokritou, P., Kane, A. B., Murphy, C. J., Hutchison, J. E., Isaacs, J. A., Jun, Y. S., Karn, B., Khondaker, S. I., Larsen, S. C., Lau, B. L. T., Pettibone, J. M., Sadik, O. A., Saleh, N. B. & Teague, C., Feb 1 2016, In : Environmental Science: Nano. 3, 1, p. 15-27 13 p.

Research output: Contribution to journalReview article

nanotechnology
Nanostructured materials
Nanotechnology
catalysis
information technology

Nanofluidics and the role of nanocapillary array membranes in mass-limited chemical analysis

Gatimu, E. N., Sweedler, J. V. & Bohn, P. W., Jun 8 2006, In : Analyst. 131, 6, p. 705-709 5 p.

Research output: Contribution to journalReview article

Nanofluidics
Microfluidics
chemical analysis
membrane
Membranes

Nanofluidics in chemical analysis

Piruska, A., Gong, M., Sweedler, J. V. & Bohn, P. W., Mar 1 2010, In : Chemical Society Reviews. 39, 3, p. 1060-1072 13 p.

Research output: Contribution to journalReview article

Nanofluidics
Nanopores
Chemical analysis
Microfluidics
Microsensors

Nanoparticles for combination drug therapy

Ma, L., Kohli, M. & Smith, A., Nov 26 2013, In : ACS Nano. 7, 11, p. 9518-9525 8 p.

Research output: Contribution to journalReview article

Drug therapy
chemotherapy
Packaging
Screening
Animals

Nanopore sensors for nucleic acid analysis

Venkatesan, B. M. & Bashir, R., Oct 2010, In : Nature Nanotechnology. 6, 10, p. 615-624 10 p.

Research output: Contribution to journalReview article

Nanopores
Nucleic acids
nucleic acids
Nucleic Acids
DNA

Nanoscale studies of protein-membrane interactions in blood clotting

Morrissey, J. H., Tajkhorshid, E. & Rienstra, C. M., Jul 1 2011, In : Journal of Thrombosis and Haemostasis. 9, 1 S, p. 162-167 6 p.

Research output: Contribution to journalReview article

Blood Coagulation
Membrane Proteins
Membranes
Phosphatidylserines
Catalysis

Nanostructured surfaces and detection instrumentation for photonic crystal enhanced fluorescence

Chaudhery, V., George, S., Lu, M., Pokhriyal, A. & Cunningham, B. T., May 2013, In : Sensors (Switzerland). 13, 5, p. 5561-5584 24 p.

Research output: Contribution to journalReview article

Optics and Photonics
Photonic crystals
Photons
Fluorescence
photonics

National outcomes of in-hospital cardiopulmonary resuscitation in patients with acute kidney injury: Years 2005 - 2011

Saeed, F., Adil, M. M., Kaleem, U. M., Khan, A. S., Holley, J. L. & Damirjian, S., Nov 1 2018, In : Clinical Nephrology. 90, 5, p. 325-333 9 p.

Research output: Contribution to journalReview article

Cardiopulmonary Resuscitation
Acute Kidney Injury
Length of Stay
Hospital Mortality
Nursing Homes

New advances in nanotechnology-based diagnosis and therapeutics for breast cancer: An assessment of active-targeting inorganic nanoplatforms

Falagan-Lotsch, P., Grzincic, E. M. & Murphy, C. J., Jan 1 2017, In : Bioconjugate Chemistry. 28, 1, p. 135-152 18 p.

Research output: Contribution to journalReview article

Nanotechnology
Breast Neoplasms
Nanoparticles
Medical nanotechnology
Iron oxides

New developments in lantibiotic biosynthesis and mode of action

Patton, G. C. & Van Der Donk, W. A., Oct 1 2005, In : Current Opinion in Microbiology. 8, 5, p. 543-551 9 p.

Research output: Contribution to journalReview article

Bacteriocins
Peptides
Peptidoglycan
Threonine
Post Translational Protein Processing

New frontiers for organismal biology

Kültz, D., Clayton, D. F., Robinson, G. E., Albertson, C., Carey, H. V., Cummings, M. E., Dewar, K., Edwards, S. V., Hofmann, H. A., Gross, L. J., Kingsolver, J. G., Meaney, M. J., Schlinger, B. A., Shingleton, A. W., Sokolowski, M. B., Somero, G. N., Stanzione, D. C. & Todgham, A. E., Jun 1 2013, In : BioScience. 63, 6, p. 464-471 8 p.

Research output: Contribution to journalReview article

Biological Sciences
organisms
genetic variation
complement
Research Design

New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products

Ortega, M. A. & van der Donk, W. A., Jan 21 2016, In : Cell chemical biology. 23, 1, p. 31-44 14 p.

Research output: Contribution to journalReview article

Biosynthesis
Biological Products
Synthetic Biology
Peptides
Biosynthetic Pathways

New Models of Hemostasis

McMichael, M., May 1 2012, In : Topics in Companion Animal Medicine. 27, 2, p. 40-45 6 p.

Research output: Contribution to journalReview article

hemostasis
coagulation
Hemostasis
Blood Coagulation
Anticoagulants