Research Output 1975 2020

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Review article

How does solvation in the cell affect protein folding and binding?

Davis, C. M., Gruebele, M. & Sukenik, S., Feb 2018, In : Current Opinion in Structural Biology. 48, p. 23-29 7 p.

Research output: Contribution to journalReview article

Protein Folding
Protein Binding
Proteins
Membrane Proteins

How it all starts: Initiation of the clotting cascade

Smith, S. A., Travers, R. J. & Morrissey, J. H., Jul 4 2015, In : Critical Reviews in Biochemistry and Molecular Biology. 50, 4, p. 326-336 11 p.

Research output: Contribution to journalReview article

Thrombosis
Blood
Blood Coagulation
Hemostasis
Thromboplastin

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P. J., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L. & 33 others, Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., Maccoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L. & Zhang, B., Feb 14 2018, In : Nature chemical biology. 14, 3, p. 206-214 9 p.

Research output: Contribution to journalReview article

Post Translational Protein Processing
Proteins
Proteome
Proteomics
Amino Acid Sequence

How streams of communication reproduce and change institutional logics: The role of categories

Ocasio, W., Loewenstein, J. & Nigam, A., Jan 1 2015, In : Academy of Management Review. 40, 1, p. 28-48 21 p.

Research output: Contribution to journalReview article

Communication
Institutional logics
Sensegiving
Remedies
Theorizing

Human milk oligosaccharides influence neonatal mucosal and systemic immunity

Donovan, S. M. & Comstock, S. S., Jan 1 2017, In : Annals of Nutrition and Metabolism. 69, 2, p. 42-51 10 p.

Research output: Contribution to journalReview article

Mucosal Immunity
Human Milk
Oligosaccharides
Infant Formula
Milk

Hydrogels for in vivo-like three-dimensional cellular studies

Devolder, R. & Kong, H. J., Jul 1 2012, In : Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 4, 4, p. 351-365 15 p.

Research output: Contribution to journalReview article

Hydrogels
Hydrogel
Polymers
Cell culture
Polyethylene glycols

Hydrogels used for cell-based drug delivery

Schmidt, J. J., Rowley, J. & Hyun, J. K., Dec 15 2008, In : Journal of Biomedical Materials Research - Part A. 87, 4, p. 1113-1122 10 p.

Research output: Contribution to journalReview article

Hydrogels
Hydrogel
Drug delivery
Biocompatible Materials
Biomolecules

Hyphenation of capillary separations with nuclear magnetic resonance spectroscopy

Jayawickrama, D. A. & Sweedler, J. V., Jun 6 2003, In : Journal of Chromatography A. 1000, 1-2, p. 819-840 22 p.

Research output: Contribution to journalReview article

Nuclear magnetic resonance spectroscopy
Nuclear magnetic resonance
Complex Mixtures
Molecular structure

Identification of the cellular targets of bioactive small organic molecules using affinity reagents

Leslie, B. J. & Hergenrother, P. J., Jun 30 2008, In : Chemical Society Reviews. 37, 7, p. 1347-1360 14 p.

Research output: Contribution to journalReview article

Molecules
Experiments
Drug Discovery

Imaging engineered tissues using structural and functional optical coherence tomography

Liang, X., Graf, B. W. & Boppart, S. A., Nov 1 2009, In : Journal of Biophotonics. 2, 11, p. 643-655 13 p.

Research output: Contribution to journalReview article

Optical tomography
Optical Coherence Tomography
tomography
Tissue
Imaging techniques

Imaging implicit perception: Promise and pitfalls

Hannula, D. E., Simons, D. J. & Cohen, N. J., Mar 2005, In : Nature Reviews Neuroscience. 6, 3, p. 247-255 9 p.

Research output: Contribution to journalReview article

Neuroimaging
History

Imaging mass spectrometry: Fundamentals and applications to drug discovery

Rubakhin, S., Jurchen, J. C., Monroe, E. B. & Sweedler, J. V., Jun 15 2005, In : Drug Discovery Today. 10, 12, p. 823-837 15 p.

Research output: Contribution to journalReview article

Drug Discovery
Mass Spectrometry
Pharmaceutical Preparations
Research
Proteins

Impact of early gut microbiota on immune and metabolic development and function

Wang, M., Siegel, M. H. & Donovan, S. M., Dec 1 2016, In : Seminars in Fetal and Neonatal Medicine. 21, 6, p. 380-387 8 p.

Research output: Contribution to journalReview article

Prebiotics
Microbiota
Metabolic Diseases
Immune System Diseases
Probiotics

Impact of Obstructive Sleep Apnea on Neurocognitive Function and Impact of Continuous Positive Air Pressure

Davies, C. R. & Harrington, J. J., Sep 1 2016, In : Sleep Medicine Clinics. 11, 3, p. 287-298 12 p.

Research output: Contribution to journalReview article

Air Pressure
Obstructive Sleep Apnea
Diffusion Tensor Imaging
Sleep Deprivation
Executive Function

Impact of peripheral hearing loss on top-down auditory processing

Lesicko, A. M. H. & Llano, D. A., Jan 1 2017, In : Hearing Research. 343, p. 4-13 10 p.

Research output: Contribution to journalReview article

Hearing Loss
Cues
Auditory Cortex
Cochlear Implants
Cochlea

Improving and repurposing biocatalysts via directed evolution

Denard, C. A., Ren, H. & Zhao, H., Apr 1 2015, In : Current Opinion in Chemical Biology. 25, p. 55-64 10 p.

Research output: Contribution to journalReview article

Enzymes
Biocatalysis
Protein Engineering
Stereoselectivity
Chemical reactivity

Incorporating DNA Methyltransferase Inhibitors (DNMTis) in the Treatment of Genitourinary Malignancies: A Systematic Review

Chovanec, M., Taza, F., Kalra, M., Hahn, N., Nephew, K. P., Spinella, M. J. & Albany, C., Feb 1 2018, In : Targeted Oncology. 13, 1, p. 49-60 12 p.

Research output: Contribution to journalReview article

Methyltransferases
DNA
Neoplasms
Tumor Suppressor Genes
Therapeutics

Industrial biotechnology: Tools and applications

Tang, W. L. & Zhao, H., Dec 1 2009, In : Biotechnology Journal. 4, 12, p. 1725-1739 15 p.

Research output: Contribution to journalReview article

Biotechnology
Synthetic Biology
Industrial Waste
Metabolic Engineering
Protein Engineering

Inflammatory polyps and aural neoplasia

Fan, T. M. & de Lorimier, L. P., Mar 1 2004, In : Veterinary Clinics of North America - Small Animal Practice. 34, 2, p. 489-509 21 p.

Research output: Contribution to journalReview article

Polyps
Ear
ears
ear diseases
Ear Diseases

Influence of exercise and aging on extracellular matrix composition in the skeletal muscle stem cell niche

Garg, K. & Boppart, M. D., Nov 2016, In : Journal of Applied Physiology. 121, 5, p. 1053-1058 6 p.

Research output: Contribution to journalReview article

Stem Cell Niche
Muscle Cells
Extracellular Matrix
Skeletal Muscle
Stem Cells

Inherited Disorders of Hemostasis in Dogs and Cats

Barr, J. W. & McMichael, M., May 1 2012, In : Topics in Companion Animal Medicine. 27, 2, p. 53-58 6 p.

Research output: Contribution to journalReview article

hemostasis
genetic disorders
coagulation
Hemostasis
Hemostatic Disorders

Inhibitory control of emotional processing: Theoretical and empirical considerations

Bartholomew, M. E., Heller, W. & Miller, G. A., Jan 1 2019, In : International Journal of Psychophysiology.

Research output: Contribution to journalReview article

Emotions
Research
Inhibition (Psychology)

Innovative techniques for evaluating behavioral nutrition interventions

Scherr, R. E., Laugero, K. D., Graham, D. J., Cunningham, B. T., Jahns, L., Lora, K. R., Reicks, M. & Mobley, A. R., Jan 1 2017, In : Advances in Nutrition. 8, 1, p. 113-125 13 p.

Research output: Contribution to journalReview article

nutritional intervention
Biosensing Techniques
Carotenoids
Research Personnel
biosensors

Insect societies and the molecular biology of social behavior

Robinson, G. E., Fahrbach, S. E. & Winston, M. L., Dec 1997, In : BioEssays. 19, 12, p. 1099-1108 10 p.

Research output: Contribution to journalReview article

Molecular biology
Social Behavior
Insects
Molecular Biology
Brain

Insights into the evolution of lanthipeptide biosynthesis

Yu, Y., Zhang, Q. & Van Der Donk, W. A., Nov 1 2013, In : Protein Science. 22, 11, p. 1478-1489 12 p.

Research output: Contribution to journalReview article

Biosynthesis
Post Translational Protein Processing
Biological Products
Peptides
Sulfides

In situ uniaxial mechanical testing of small scale materials - A review

Kang, W., Rajagopalan, J. & Saif, M. T. A., Dec 2010, In : Nanoscience and Nanotechnology Letters. 2, 4, p. 282-287 6 p.

Research output: Contribution to journalReview article

Mechanical testing
Mechanical properties
Testing

Integration of machine learning and pharmacogenomic biomarkers for predicting response to antidepressant treatment: Can computational intelligence be used to augment clinical assessments?

Athreya, A. P., Iyer, R., Wang, L., Weinshilboum, R. M. & Bobo, W. V., Jan 1 2019, In : Pharmacogenomics. 20, 14, p. 983-988 6 p.

Research output: Contribution to journalReview article

Open Access
Artificial Intelligence
Pharmacogenetics
Antidepressive Agents
Biomarkers
Machine Learning

Integration of microfluidics in animal in vitro embryo production

Wheeler, M. B. & Rubessa, M., Jan 1 2017, In : Molecular Human Reproduction. 23, 4, p. 248-256 9 p.

Research output: Contribution to journalReview article

Microfluidics
Embryonic Structures
Mammalian Embryo
Livestock
Oocytes

Intrinsic neuronal rhythms in the suprachiasmatic nuclei and their adjustment.

Gillette, M. L., Medanic, M., McArthur, A. J., Liu, C., Ding, J. M., Faiman, L. E., Weber, E. T., Tcheng, T. K. & Gallman, E. A., 1995, In : Ciba Foundation symposium. 183

Research output: Contribution to journalReview article

Suprachiasmatic Nucleus
Neuropeptide Y
Melatonin
Neurons
Cyclic GMP

Introduction to the second global summit on the health effects of yogurt

Shamir, R. & Donovan, S. M., Jan 1 2015, In : Nutrition reviews. 73, p. 1-3 3 p.

Research output: Contribution to journalReview article

Yogurt
Health

Introduction to the yogurt in nutrition initiative and the first global summit on the health effects of yogurt

Donovan, S. M. & Shamir, R., May 1 2014, In : American Journal of Clinical Nutrition. 99, 5, p. 1209S-1211S

Research output: Contribution to journalReview article

Yogurt
Health
Food
Dairy Products
Insurance Benefits

Investigating brain d-serine: Advocacy for good practices

Mothet, J. P., Billard, J. M., Pollegioni, L., Coyle, J. T. & Sweedler, J. V., May 2019, In : Acta Physiologica. 226, 1, e13257.

Research output: Contribution to journalReview article

Serine
Amino Acids
Brain
Molecular Models
Practice Guidelines

Invited review: Evolution of meat animal growth research during the past 50 years: Adipose and muscle stem cells

Dodson, M. V., Allen, R. E., Du, M., Bergen, W. G., Velleman, S. G., Poulos, S. P., Fernyhough-Culver, M., Wheeler, M. B., Duckett, S. K., Young, M. R. I., Voy, B. H., Jiang, Z. & Hausman, G. J., Feb 23 2015, In : Journal of animal science. 93, 2, p. 457-481 25 p.

Research output: Contribution to journalReview article

animal growth
food animals
Meat
myocytes
Muscle Cells

Is SDN the de-constraining constraint of the future internet?

Crowcroft, J., Fidler, M., Nahrstedt, K. & Steinmetz, R., Oct 1 2013, In : Computer Communication Review. 43, 5, p. 13-18 6 p.

Research output: Contribution to journalReview article

Technical presentations
Internet
Software defined networking
Industry

Is the anti-inflammatory effect of regular exercise responsible for reduced cardiovascular disease?

Wilund, K. R., Jun 1 2007, In : Clinical Science. 112, 11-12, p. 543-555 13 p.

Research output: Contribution to journalReview article

Anti-Inflammatory Agents
Cardiovascular Diseases
Blood Vessels
Exercise
Cytokines

Label-free biosensor imaging on photonic crystal surfaces

Zhuo, Y. & Cunningham, B. T., Aug 28 2015, In : Sensors (Switzerland). 15, 9, p. 21613-21635 23 p.

Research output: Contribution to journalReview article

Optics and Photonics
Biosensing Techniques
Photonic crystals
bioinstrumentation
crystal surfaces

Label-free cell-based assays using photonic crystal optical biosensors

Shamah, S. M. & Cunningham, B. T., Mar 21 2011, In : Analyst. 136, 6, p. 1090-1102 13 p.

Research output: Contribution to journalReview article

Optics and Photonics
Biosensing Techniques
Photonic crystals
Biosensors
Labels

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

Davis, C. M. & Gruebele, M., Apr 3 2018, In : Biochemistry. 57, 13, p. 1929-1938 10 p.

Research output: Contribution to journalReview article

Cytology
Labeling
RNA
Protein folding
Imaging techniques

Lantibiotics: Peptides of diverse structure and function

Willey, J. M. & van der Donk, W. A., Nov 14 2007, In : Annual review of microbiology. 61, p. 477-501 25 p.

Research output: Contribution to journalReview article

Bacteriocins
Peptides
Anti-Bacterial Agents
Protein Engineering
Gram-Positive Bacteria

Lessons learned from nanoscale specimens tested by MEMS-based apparatus

Elhebeary, M. & Saif, M. T. A., May 19 2017, In : Journal of Physics D: Applied Physics. 50, 24, 243001.

Research output: Contribution to journalReview article

lessons learned
microelectromechanical systems
MEMS
materials tests
prognosis

Lighting up the nascent cell wall.

van der Donk, W. A., Aug 22 2006, In : ACS chemical biology. 1, 7, p. 425-428 4 p.

Research output: Contribution to journalReview article

Lighting
Cell Wall
Cells
Peptidoglycan
Anti-Bacterial Agents

Linking brains and brawn: Exercise and the evolution of human neurobiology

Raichlen, D. A. & Polk, J. D., Jan 1 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1750, 20122250.

Research output: Contribution to journalReview article

neurophysiology
Neurobiology
brain
Brain
exercise

Lymphoma updates

Fan, T. M., May 2003, In : Veterinary Clinics of North America - Small Animal Practice. 33, 3, p. 455-471 17 p.

Research output: Contribution to journalReview article

lymphoma
Lymphoma
Felidae
dogs
Dogs

Magnetic resonance angiography of the visceral arteries: Techniques and current applications

Li, K. C. P., Aug 1997, In : Endoscopy. 29, 6, p. 496-503 8 p.

Research output: Contribution to journalReview article

Oximetry
Magnetic Resonance Angiography
Vascular Diseases
Magnetic Resonance Spectroscopy
Arteries

Magnetomotive contrast for in vivo optical coherence tomography

Oldenburg, A. L., Toublan, F. J. J., Suslick, K. S., Wei, A. & Boppart, S. A., Aug 22 2005, In : Optics Express. 13, 17, p. 6597-6614 18 p.

Research output: Contribution to journalReview article

tomography
nanoparticles
histology
magnetic fields
magnetite

Magnetomotive Optical Coherence Elastography for Magnetic Hyperthermia Dosimetry Based on Dynamic Tissue Biomechanics

Huang, P. C., Pande, P., Ahmad, A., Marjanovic, M., Spillman, D. R., Odintsov, B. & Boppart, S. A., Jul 2016, In : IEEE Journal of Selected Topics in Quantum Electronics. 22, 4, 7355327.

Research output: Contribution to journalReview article

biodynamics
Biomechanics
hyperthermia
Dosimetry
dosimeters

Mass spectrometric imaging of the nervous system

Rubakhin, S., Hatcher, N. G., Monroe, E. B., Heien, M. L. & Sweedler, J. V., Nov 1 2007, In : Current Pharmaceutical Design. 13, 32, p. 3325-3334 10 p.

Research output: Contribution to journalReview article

Brain Chemistry
Brain Diseases
Nervous System
Biomedical Research
Mass Spectrometry

Mass spectrometry-based characterization of endogenous peptides and metabolites in small volume samples

Ong, T. H., Tillmaand, E. G., Makurath, M., Rubakhin, S. S. & Sweedler, J. V., Jul 1 2015, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1854, 7, p. 732-740 9 p.

Research output: Contribution to journalReview article

Metabolites
Mass spectrometry
Mass Spectrometry
Peptides
Assays

Mass spectrometry imaging and profiling of single cells

Lanni, E. J., Rubakhin, S. & Sweedler, J. V., Aug 30 2012, In : Journal of Proteomics. 75, 16, p. 5036-5051 16 p.

Research output: Contribution to journalReview article

Mass spectrometry
Secondary Ion Mass Spectrometry
Mass Spectrometry
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Imaging techniques

Mechanism and applications of phosphite dehydrogenase

Relyea, H. A. & van der Donk, W. A., Jun 2005, In : Bioorganic Chemistry. 33, 3, p. 171-189 19 p.

Research output: Contribution to journalReview article

NAD
Phosphites
Organophosphonates
Enzymes
Metabolism