Research Output 1977 2020

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Review article

Label-free biosensor imaging on photonic crystal surfaces

Zhuo, Y. & Cunningham, B. T., Aug 28 2015, In : Sensors (Switzerland). 15, 9, p. 21613-21635 23 p.

Research output: Contribution to journalReview article

Optics and Photonics
Biosensing Techniques
Photonic crystals
bioinstrumentation
crystal surfaces

Label-free cell-based assays using photonic crystal optical biosensors

Shamah, S. M. & Cunningham, B. T., Mar 21 2011, In : Analyst. 136, 6, p. 1090-1102 13 p.

Research output: Contribution to journalReview article

Optics and Photonics
Biosensing Techniques
Photonic crystals
Biosensors
Labels

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

Davis, C. M. & Gruebele, M., Apr 3 2018, In : Biochemistry. 57, 13, p. 1929-1938 10 p.

Research output: Contribution to journalReview article

Cytology
Labeling
RNA
Protein folding
Imaging techniques

Lantibiotics: Peptides of diverse structure and function

Willey, J. M. & van der Donk, W. A., Nov 14 2007, In : Annual review of microbiology. 61, p. 477-501 25 p.

Research output: Contribution to journalReview article

Bacteriocins
Peptides
Anti-Bacterial Agents
Protein Engineering
Gram-Positive Bacteria

Lessons learned from nanoscale specimens tested by MEMS-based apparatus

Elhebeary, M. & Saif, M. T. A., May 19 2017, In : Journal of Physics D: Applied Physics. 50, 24, 243001.

Research output: Contribution to journalReview article

lessons learned
microelectromechanical systems
MEMS
materials tests
prognosis

Lighting up the nascent cell wall.

van der Donk, W. A., Aug 22 2006, In : ACS chemical biology. 1, 7, p. 425-428 4 p.

Research output: Contribution to journalReview article

Lighting
Cell Wall
Cells
Peptidoglycan
Anti-Bacterial Agents

Linking brains and brawn: Exercise and the evolution of human neurobiology

Raichlen, D. A. & Polk, J. D., Jan 1 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1750, 20122250.

Research output: Contribution to journalReview article

neurophysiology
Neurobiology
brain
Brain
exercise

Lymphoma updates

Fan, T. M., May 2003, In : Veterinary Clinics of North America - Small Animal Practice. 33, 3, p. 455-471 17 p.

Research output: Contribution to journalReview article

lymphoma
Lymphoma
Felidae
dogs
Dogs

Magnetomotive contrast for in vivo optical coherence tomography

Oldenburg, A. L., Toublan, F. J. J., Suslick, K. S., Wei, A. & Boppart, S. A., Aug 22 2005, In : Optics Express. 13, 17, p. 6597-6614 18 p.

Research output: Contribution to journalReview article

tomography
nanoparticles
histology
magnetic fields
magnetite

Magnetomotive Optical Coherence Elastography for Magnetic Hyperthermia Dosimetry Based on Dynamic Tissue Biomechanics

Huang, P. C., Pande, P., Ahmad, A., Marjanovic, M., Spillman, D. R., Odintsov, B. & Boppart, S. A., Jul 2016, In : IEEE Journal of Selected Topics in Quantum Electronics. 22, 4, 7355327.

Research output: Contribution to journalReview article

biodynamics
Biomechanics
hyperthermia
Dosimetry
dosimeters

Mass spectrometric imaging of the nervous system

Rubakhin, S., Hatcher, N. G., Monroe, E. B., Heien, M. L. & Sweedler, J. V., Nov 1 2007, In : Current Pharmaceutical Design. 13, 32, p. 3325-3334 10 p.

Research output: Contribution to journalReview article

Brain Chemistry
Brain Diseases
Nervous System
Biomedical Research
Mass Spectrometry

Mass spectrometry-based characterization of endogenous peptides and metabolites in small volume samples

Ong, T. H., Tillmaand, E. G., Makurath, M., Rubakhin, S. & Sweedler, J. V., Jul 1 2015, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1854, 7, p. 732-740 9 p.

Research output: Contribution to journalReview article

Metabolites
Mass spectrometry
Mass Spectrometry
Peptides
Assays

Mass spectrometry imaging and profiling of single cells

Lanni, E. J., Rubakhin, S. & Sweedler, J. V., Aug 30 2012, In : Journal of Proteomics. 75, 16, p. 5036-5051 16 p.

Research output: Contribution to journalReview article

Mass spectrometry
Secondary Ion Mass Spectrometry
Mass Spectrometry
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Imaging techniques

Mechanism and applications of phosphite dehydrogenase

Relyea, H. A. & van der Donk, W. A., Jun 2005, In : Bioorganic Chemistry. 33, 3, p. 171-189 19 p.

Research output: Contribution to journalReview article

NAD
Phosphites
Organophosphonates
Enzymes
Metabolism

Mechanism and control of molecular energy flow: A modeling perspective

Gruebele, M., Mar 1 2003, In : Theoretical Chemistry Accounts. 109, 2, p. 53-63 11 p.

Research output: Contribution to journalReview article

Chemical reactions
Hamiltonians
Molecules
chemical reactions
energy

Mechanisms of Salmonella pathogenesis in animal models

Palmer, A. D. & Slauch, J. M., Nov 17 2017, In : Human and Ecological Risk Assessment. 23, 8, p. 1877-1892 16 p.

Research output: Contribution to journalReview article

Salmonella
Salmonella Infections
Animals
Animal Models
animal

Mechanobiology of the skeleton

Turner, C. H., Warden, S. J., Bellido, T., Plotkin, L. I., Kumar, N., Jasiuk, I., Danzig, J. & Robling, A. G., Apr 28 2009, In : Science Signaling. 2, 68

Research output: Contribution to journalReview article

Biophysics
Skeleton
Bone
Bone and Bones
Osteocytes

Medical diagnostics with mobile devices: Comparison of intrinsic and extrinsic sensing

Kwon, L., Long, K. D., Wan, Y., Yu, H. & Cunningham, B. T., May 1 2016, In : Biotechnology Advances. 34, 3, p. 291-304 14 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Handheld Computers
Precision Medicine
Mobile devices
Equipment and Supplies

Melatonin, sleep, and circadian rhythms: Rationale for development of specific melatonin agonists

Turek, F. W. & Gillette, M. L., Nov 1 2004, In : Sleep Medicine. 5, 6, p. 523-532 10 p.

Research output: Contribution to journalReview article

Melatonin
Circadian Rhythm
Sleep
Circadian Rhythm Sleep Disorders
Sleep Initiation and Maintenance Disorders

Message framing and medium considerations for recruiting newly eligible teen organ donor registrants

Quick, B. L., Bosch, D. & Morgan, S. E., Jun 1 2012, In : American Journal of Transplantation. 12, 6, p. 1593-1597 5 p.

Research output: Contribution to journalReview article

Pamphlets
Tissue Donors
Tissue and Organ Procurement
Postal Service
Marketing

Metabolic engineering of oleaginous yeasts for production of fuels and chemicals

Shi, S. & Zhao, H., Nov 8 2017, In : Frontiers in Microbiology. 8, NOV, 2185.

Research output: Contribution to journalReview article

Metabolic Engineering
Yeasts
Genetic Engineering
Lipomyces
Yarrowia

Micro- and nanotechnology for HIV/AIDS diagnostics in resource-limited settings

Damhorst, G. L., Watkins, N. N. & Bashir, R., Oct 1 2013, In : IEEE Transactions on Biomedical Engineering. 60, 3, p. 715-726 12 p.

Research output: Contribution to journalReview article

Viruses
Nanotechnology
T-cells
Immune system
Blood

Microenvironmental regulation of biomacromolecular therapies

Kong, H. J. & Mooney, D. J., Jun 1 2007, In : Nature Reviews Drug Discovery. 6, 6, p. 455-463 9 p.

Research output: Contribution to journalReview article

Extracellular Matrix
Therapeutics
Drug Carriers
Drug Delivery Systems
Cell Adhesion

Microfluidic systems for studying neurotransmitters and neurotransmission

Croushore, C. A. & Sweedler, J. V., May 7 2013, In : Lab on a Chip. 13, 9, p. 1666-1676 11 p.

Research output: Contribution to journalReview article

Microfluidics
Synaptic Transmission
Neurotransmitter Agents
Molecules
Cell signaling

Micro-managing the executioner: Pathogen targeting of mitochondria

Blanke, S. R., Feb 1 2005, In : Trends in Microbiology. 13, 2, p. 64-71 8 p.

Research output: Contribution to journalReview article

Mitochondria
Mitochondrial Membranes
Cell Survival
Cell Death
Eukaryotic Cells

Microplate-based, label-free detection of biomolecular interactions: Applications in proteomics

Cunningham, B. T. & Laing, L., Jul 7 2006, In : Expert Review of Proteomics. 3, 3, p. 271-281 11 p.

Research output: Contribution to journalReview article

Biosensing Techniques
Proteomics
Labels
Epitope Mapping
Biosensors

Microplate-based label-free screening on the BIND system

Cunningham, B. T. & Laing, L., Sep 1 2007, In : Bio Tech International. 19, 4, p. 14-18 5 p.

Research output: Contribution to journalReview article

Biosensing Techniques
Small Molecule Libraries
Technology
Proteins

MicroRNAs: Meta-controllers of gene expression in synaptic activity emerge as genetic and diagnostic markers of human disease

Ceman, S. & Saugstad, J., Apr 2011, In : Pharmacology and Therapeutics. 130, 1, p. 26-37 12 p.

Research output: Contribution to journalReview article

MicroRNAs
Genetic Markers
Gene Expression
RNA-Induced Silencing Complex
Untranslated RNA

MicroRNAs in skeletal myogenesis

Ge, Y. & Chen, J., Feb 1 2011, In : Cell Cycle. 10, 3, p. 441-448 8 p.

Research output: Contribution to journalReview article

Muscle Development
MicroRNAs
Skeletal Muscle
Naphazoline
Biological Phenomena

Microscale NMR

Wolters, A. M., Jayawickrama, D. A. & Sweedler, J. V., Oct 1 2002, In : Current Opinion in Chemical Biology. 6, 5, p. 711-716 6 p.

Research output: Contribution to journalReview article

Isotachophoresis
Nuclear magnetic resonance
Magnetic Resonance Spectroscopy
Cell Size
Nuclear magnetic resonance spectroscopy

Microscopic imaging and spectroscopy with scattered light

Boustany, N. N., Boppart, S. A. & Backman, V., Aug 15 2010, In : Annual Review of Biomedical Engineering. 12, p. 285-314 30 p.

Research output: Contribution to journalReview article

Spectrum Analysis
Spectroscopy
Tissue
Imaging techniques
Light

Microscopic view of lipids and their diverse biological functions

Wen, P. C., Mahinthichaichan, P., Trebesch, N., Jiang, T., Zhao, Z., Shinn, E., Wang, Y., Shekhar, M., Kapoor, K., Chan, C. K. & Tajkhorshid, E., Aug 2018, In : Current Opinion in Structural Biology. 51, p. 177-186 10 p.

Research output: Contribution to journalReview article

Lipids
Membranes
Physiological Phenomena
Lipid Bilayers
Hydrodynamics

Microsecond folding experiments and simulations: A match is made

Prigozhin, M. B. & Gruebele, M., Mar 14 2013, In : Physical Chemistry Chemical Physics. 15, 10, p. 3372-3388 17 p.

Research output: Contribution to journalReview article

folding
Protein folding
simulation
Experiments
Refining

Minimum Information about a Biosynthetic Gene cluster

Medema, M. H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J. B., Blin, K., De Bruijn, I., Chooi, Y. H., Claesen, J., Coates, R. C., Cruz-Morales, P., Duddela, S., Düsterhus, S., Edwards, D. J., Fewer, D. P., Garg, N., Geiger, C., Gomez-Escribano, J. P., Greule, A., Hadjithomas, M. & 134 others, Haines, A. S., Helfrich, E. J. N., Hillwig, M. L., Ishida, K., Jones, A. C., Jones, C. S., Jungmann, K., Kegler, C., Kim, H. U., Kötter, P., Krug, D., Masschelein, J., Melnik, A. V., Mantovani, S. M., Monroe, E. A., Moore, M., Moss, N., Nützmann, H. W., Pan, G., Pati, A., Petras, D., Reen, F. J., Rosconi, F., Rui, Z., Tian, Z., Tobias, N. J., Tsunematsu, Y., Wiemann, P., Wyckoff, E., Yan, X., Yim, G., Yu, F., Xie, Y., Aigle, B., Apel, A. K., Balibar, C. J., Balskus, E. P., Barona-Gómez, F., Bechthold, A., Bode, H. B., Borriss, R., Brady, S. F., Brakhage, A. A., Caffrey, P., Cheng, Y. Q., Clardy, J., Cox, R. J., De Mot, R., Donadio, S., Donia, M. S., Van Der Donk, W. A., Dorrestein, P. C., Doyle, S., Driessen, A. J. M., Ehling-Schulz, M., Entian, K. D., Fischbach, M. A., Gerwick, L., Gerwick, W. H., Gross, H., Gust, B., Hertweck, C., Höfte, M., Jensen, S. E., Ju, J., Katz, L., Kaysser, L., Klassen, J. L., Keller, N. P., Kormanec, J., Kuipers, O. P., Kuzuyama, T., Kyrpides, N. C., Kwon, H. J., Lautru, S., Lavigne, R., Lee, C. Y., Linquan, B., Liu, X., Liu, W., Luzhetskyy, A., Mahmud, T., Mast, Y., Méndez, C., Metsä-Ketelä, M., Micklefield, J., Mitchell, D. A., Moore, B. S., Moreira, L. M., Müller, R., Neilan, B. A., Nett, M., Nielsen, J., O'Gara, F., Oikawa, H., Osbourn, A., Osburne, M. S., Ostash, B., Payne, S. M., Pernodet, J. L., Petricek, M., Piel, J., Ploux, O., Raaijmakers, J. M., Salas, J. A., Schmitt, E. K., Scott, B., Seipke, R. F., Shen, B., Sherman, D. H., Sivonen, K., Smanski, M. J., Sosio, M., Stegmann, E., Süssmuth, R. D., Tahlan, K., Thomas, C. M., Tang, Y., Truman, A. W., Viaud, M., Walton, J. D., Walsh, C. T., Weber, T., Van Wezel, G. P., Wilkinson, B., Willey, J. M., Wohlleben, W., Wright, G. D., Ziemert, N., Zhang, C., Zotchev, S. B., Breitling, R., Takano, E. & Glöckner, F. O., Aug 18 2015, In : Nature chemical biology. 11, 9, p. 625-631 7 p.

Research output: Contribution to journalReview article

Multigene Family
Information Storage and Retrieval
Fungi
Bacteria

Minireview: Steroid-regulated paracrine mechanisms controlling implantation

Pawar, S., Hantak, A. M., Bagchi, I. C. & Bagchi, M. K., Sep 1 2014, In : Molecular endocrinology (Baltimore, Md.). 28, 9, p. 1408-1422 15 p.

Research output: Contribution to journalReview article

Progesterone Receptors
Estrogen Receptors
Embryonic Structures
Steroids
Pregnancy

Mitochondrial VDAC1: A key gatekeeper as potential therapeutic target

Camara, A. K. S., Zhou, Y. F., Wen, P. C., Tajkhorshid, E. & Kwok, W. M., Jun 30 2017, In : Frontiers in Physiology. 8, JUN, 460.

Research output: Contribution to journalReview article

Voltage-Dependent Anion Channel 1
Mitochondria
Therapeutics
Apoptosis
Apoptosis Regulatory Proteins

Modelling of bone fracture and strength at different length scales: A review

Sabet, F. A., Najafi, A. R., Hamed, E. & Jasiuk, I., Feb 6 2016, In : Interface Focus. 6, 1, 20150055.

Research output: Contribution to journalReview article

Bone Fractures
Bone
Bone and Bones
Bone Diseases
Osteoporosis

Models of antimicrobial resistance and foodborne illness: Examining assumptions and practical applications

Barber, D. A., Miller, G. Y. & McNamara, P. E., Apr 1 2003, In : Journal of Food Protection. 66, 4, p. 700-709 10 p.

Research output: Contribution to journalReview article

Foodborne Diseases
foodborne illness
antibiotic resistance
Food
quantitative risk assessment

Modification of the Genome of Domestic Animals

Lotti, S. N., Polkoff, K. M., Rubessa, M. & Wheeler, M. B., Jul 3 2017, In : Animal Biotechnology. 28, 3, p. 198-210 13 p.

Research output: Contribution to journalReview article

Domestic Animals
domestic animals
nucleases
Animals
Genes

Molecular dynamics simulations of membrane channels and transporters

Khalili-Araghi, F., Gumbart, J., Wen, P. C., Sotomayor, M., Tajkhorshid, E. & Schulten, K., Apr 1 2009, In : Current Opinion in Structural Biology. 19, 2, p. 128-137 10 p.

Research output: Contribution to journalReview article

Membrane Transport Proteins
Molecular Dynamics Simulation
Ion Channels
Aquaporins
Proteins

Molecular dynamics simulations of proteins in lipid bilayers

Gumbart, J., Wang, Y., Aksimentiev, A., Tajkhorshid, E. & Schulten, K., Aug 1 2005, In : Current Opinion in Structural Biology. 15, 4, p. 423-431 9 p.

Research output: Contribution to journalReview article

Lipid Bilayers
Molecular Dynamics Simulation
Membrane Proteins
Proteins
Aquaporins

Molluscum contagiosum virus: Persistence pays off

Randall, C. M. H. & Shisler, J. L., Jun 1 2013, In : Future Virology. 8, 6, p. 561-573 13 p.

Research output: Contribution to journalReview article

Molluscum contagiosum virus
Molluscum Contagiosum
Viruses
Monkeypox
Inflammation

Monitoring of quality of life in congestive heart failure populations

Berlin, R. B. & Schatz, B. R., Jan 1 2001, In : Congestive Heart Failure. 7, 1, p. 13-21+29

Research output: Contribution to journalReview article

Heart Failure
Quality of Life
Population
Health
Internet

mTOR signaling: PLD takes center stage

Sun, Y. & Chen, J., Oct 15 2008, In : Cell Cycle. 7, 20, p. 3118-3123 6 p.

Research output: Contribution to journalReview article

Phospholipase D
Sirolimus
Phosphatidic Acids
Biological Phenomena
Food

Multichannel spectrometers in animals

Cronin, T. W., Garcia, M. & Gruev, V., Mar 2018, In : Bioinspiration and Biomimetics. 13, 2, 021001.

Research output: Contribution to journalReview article

Imaging systems
Spectrometers
Animals
Biomimetics
Invertebrates

Multi-scale modelling of elastic moduli of trabecular bone

Hamed, E., Jasiuk, I., Yoo, A., Lee, Y. & Liszka, T., Jul 7 2012, In : Journal of the Royal Society Interface. 9, 72, p. 1654-1673 20 p.

Research output: Contribution to journalReview article

Elastic Modulus
Bone
Elastic moduli
Nanocomposites
Micromechanics

Multistep one-pot reactions combining biocatalysts and chemical catalysts for asymmetric synthesis

Denard, C. A., Hartwig, J. F. & Zhao, H., Dec 6 2013, In : ACS Catalysis. 3, 12, p. 2856-2864 9 p.

Research output: Contribution to journalReview article

Biocatalysts
Catalysts
Enzymes
Stereoselectivity
Regioselectivity

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

Pathogens
Bacteriophages
Biosensors
Light scattering
Explosions

NanoEHS - Defining fundamental science needs: No easy feat when the simple itself is complex

Grassian, V. H., Haes, A. J., Mudunkotuwa, I. A., Demokritou, P., Kane, A. B., Murphy, C. J., Hutchison, J. E., Isaacs, J. A., Jun, Y. S., Karn, B., Khondaker, S. I., Larsen, S. C., Lau, B. L. T., Pettibone, J. M., Sadik, O. A., Saleh, N. B. & Teague, C., Feb 1 2016, In : Environmental Science: Nano. 3, 1, p. 15-27 13 p.

Research output: Contribution to journalReview article

nanotechnology
Nanostructured materials
Nanotechnology
catalysis
information technology

Nanofluidics and the role of nanocapillary array membranes in mass-limited chemical analysis

Gatimu, E. N., Sweedler, J. V. & Bohn, P. W., Jun 8 2006, In : Analyst. 131, 6, p. 705-709 5 p.

Research output: Contribution to journalReview article

Nanofluidics
Microfluidics
chemical analysis
membrane
Membranes