Research Output 1969 2020

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Review article
2013

Changes in Fertility and Hormone Replacement Therapy in Kidney Disease

Holley, J. L. & Schmidt, R. J., May 1 2013, In : Advances in Chronic Kidney Disease. 20, 3, p. 240-245 6 p.

Research output: Contribution to journalReview article

Hormone Replacement Therapy
Kidney Diseases
Infertility
Chronic Kidney Failure
Fertility

Computational solutions for omics data

Berger, B., Peng, J. & Singh, M., May 1 2013, In : Nature Reviews Genetics. 14, 5, p. 333-346 14 p.

Research output: Contribution to journalReview article

Sequence Analysis
Software
Technology
Datasets

Correlated imaging-a grand challenge in chemical analysis

Masyuko, R., Lanni, E. J., Sweedler, J. V. & Bohn, P. W., Apr 7 2013, In : Analyst. 138, 7, p. 1924-1939 16 p.

Research output: Contribution to journalReview article

chemical analysis
Imaging techniques
Chemical analysis
experiment
Experiments

Directed evolution as a powerful synthetic biology tool

Cobb, R. E., Sun, N. & Zhao, H., Mar 15 2013, In : Methods. 60, 1, p. 81-90 10 p.

Research output: Contribution to journalReview article

Synthetic Biology
Biological systems
Environmental Biodegradation
Biofuels
Bioremediation

Efficacy of β-hydroxy-β-methylbutyrate supplementation in elderly and clinical populations

Fitschen, P. J., Wilson, G. J., Wilson, J. M. & Wilund, K. R., Jan 1 2013, In : Nutrition. 29, 1, p. 29-36 8 p.

Research output: Contribution to journalReview article

Muscles
Population
Leucine
Acquired Immunodeficiency Syndrome
Chronic Disease

Evidence-based medicine: The design and interpretation of noninferiority clinical trials in veterinary medicine

Freise, K. J., Lin, T. L., Fan, T. M., Recta, V. & Clark, T. P., Nov 1 2013, In : Journal of veterinary internal medicine. 27, 6, p. 1305-1317 13 p.

Research output: Contribution to journalReview article

Veterinary Medicine
Evidence-Based Medicine
veterinary medicine
clinical trials
medicine

Frequency, timing, and predictors of neurological dysfunction in the nonmyelopathic patient with cervical spinal cord compression, canal stenosis, and/or ossification of the posterior longitudinal ligament.

Wilson, J. R., Barry, S., Fischer, D. J., Skelly, A. C., Arnold, P. M., Riew, K. D., Shaffrey, C. I., Traynelis, V. C. & Fehlings, M. G., Oct 15 2013, In : Spine. 38, 22 Suppl 1, p. S37-54

Research output: Contribution to journalReview article

Ossification of Posterior Longitudinal Ligament
Spinal Cord Compression
Spinal Cord Diseases
Pathologic Constriction
Spondylosis

Insights into the evolution of lanthipeptide biosynthesis

Yu, Y., Zhang, Q. & Van Der Donk, W. A., Nov 1 2013, In : Protein Science. 22, 11, p. 1478-1489 12 p.

Research output: Contribution to journalReview article

Biosynthesis
Post Translational Protein Processing
Biological Products
Peptides
Sulfides

Is SDN the de-constraining constraint of the future internet?

Crowcroft, J., Fidler, M., Nahrstedt, K. & Steinmetz, R., Oct 1 2013, In : Computer Communication Review. 43, 5, p. 13-18 6 p.

Research output: Contribution to journalReview article

Technical presentations
Internet
Software defined networking
Industry

Linking brains and brawn: Exercise and the evolution of human neurobiology

Raichlen, D. A. & Polk, J. D., Jan 1 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1750, 20122250.

Research output: Contribution to journalReview article

neurophysiology
Neurobiology
brain
Brain
exercise

Micro- and nanotechnology for HIV/AIDS diagnostics in resource-limited settings

Damhorst, G. L., Watkins, N. N. & Bashir, R., Oct 1 2013, In : IEEE Transactions on Biomedical Engineering. 60, 3, p. 715-726 12 p.

Research output: Contribution to journalReview article

Viruses
Nanotechnology
T-cells
Immune system
Blood

Microfluidic systems for studying neurotransmitters and neurotransmission

Croushore, C. A. & Sweedler, J. V., May 7 2013, In : Lab on a Chip. 13, 9, p. 1666-1676 11 p.

Research output: Contribution to journalReview article

Microfluidics
Synaptic Transmission
Neurotransmitter Agents
Molecules
Cell signaling

Microsecond folding experiments and simulations: A match is made

Prigozhin, M. B. & Gruebele, M., Mar 14 2013, In : Physical Chemistry Chemical Physics. 15, 10, p. 3372-3388 17 p.

Research output: Contribution to journalReview article

folding
Protein folding
simulation
Experiments
Refining

Molluscum contagiosum virus: Persistence pays off

Randall, C. M. H. & Shisler, J. L., Jun 1 2013, In : Future Virology. 8, 6, p. 561-573 13 p.

Research output: Contribution to journalReview article

Molluscum contagiosum virus
Molluscum Contagiosum
Viruses
Monkeypox
Inflammation

Multistep one-pot reactions combining biocatalysts and chemical catalysts for asymmetric synthesis

Denard, C. A., Hartwig, J. F. & Zhao, H., Dec 6 2013, In : ACS Catalysis. 3, 12, p. 2856-2864 9 p.

Research output: Contribution to journalReview article

Biocatalysts
Catalysts
Enzymes
Stereoselectivity
Regioselectivity

Nanoparticles for combination drug therapy

Ma, L., Kohli, M. & Smith, A., Nov 26 2013, In : ACS Nano. 7, 11, p. 9518-9525 8 p.

Research output: Contribution to journalReview article

Drug therapy
chemotherapy
Packaging
Screening
Animals

Nanostructured surfaces and detection instrumentation for photonic crystal enhanced fluorescence

Chaudhery, V., George, S., Lu, M., Pokhriyal, A. & Cunningham, B. T., May 2013, In : Sensors (Switzerland). 13, 5, p. 5561-5584 24 p.

Research output: Contribution to journalReview article

Optics and Photonics
Photonic crystals
Photons
Fluorescence
photonics

New frontiers for organismal biology

Kültz, D., Clayton, D. F., Robinson, G. E., Albertson, C., Carey, H. V., Cummings, M. E., Dewar, K., Edwards, S. V., Hofmann, H. A., Gross, L. J., Kingsolver, J. G., Meaney, M. J., Schlinger, B. A., Shingleton, A. W., Sokolowski, M. B., Somero, G. N., Stanzione, D. C. & Todgham, A. E., Jun 1 2013, In : BioScience. 63, 6, p. 464-471 8 p.

Research output: Contribution to journalReview article

Biological Sciences
organisms
genetic variation
complement
Research Design

Omega-3 fatty acids as a putative treatment for traumatic brain injury

Wang, H., Hasadsri, L., Wang, B. H., Lee, J. V., Erdman, J. W., Llano, D. A., Barbey, A. K., Wszalek, T. & Sharrock, M. F., Jun 1 2013, In : Journal of Neurotrauma. 30, 11, p. 897-906 10 p.

Research output: Contribution to journalReview article

Omega-3 Fatty Acids
Therapeutics
Wounds and Injuries
Traumatic Brain Injury
Afghanistan

Optical coherence tomography for rapid tissue screening and directed histological sectioning.

Jung, W. & Boppart, S. A., 2013, In : Studies in Health Technology and Informatics. 185, p. 109-128 20 p.

Research output: Contribution to journalReview article

Optical tomography
Optical Coherence Tomography
Screening
Tissue
Imaging techniques

Phosphonate biosynthesis and catabolism: A treasure trove of unusual enzymology

Peck, S. C. & van der Donk, W. A., Aug 1 2013, In : Current Opinion in Chemical Biology. 17, 4, p. 580-588 9 p.

Research output: Contribution to journalReview article

Organophosphonates
Biosynthesis
Biochemistry
Phosphates
Biological Products

Polymer mechanochemistry: Techniques to generate molecular force via elongational flows

May, P. A. & Moore, J. S., Sep 21 2013, In : Chemical Society Reviews. 42, 18, p. 7497-7506 10 p.

Research output: Contribution to journalReview article

Polymers
Flow fields
Chemical elements

Progress toward single cell metabolomics

Rubakhin, S. S., Lanni, E. J. & Sweedler, J. V., Feb 1 2013, In : Current Opinion in Biotechnology. 24, 1, p. 95-104 10 p.

Research output: Contribution to journalReview article

Metabolomics
Metabolites
Molecules
Microfluidics
Mass spectrometry

Quantitation of endogenous peptides using mass spectrometry based methods

Romanova, E. V., Dowd, S. E. & Sweedler, J. V., Oct 1 2013, In : Current Opinion in Chemical Biology. 17, 5, p. 801-808 8 p.

Research output: Contribution to journalReview article

Mass spectrometry
Mass Spectrometry
Peptides
Data Mining
Molecular interactions

Relationships among cognition, emotion, and motivation: Implications for intervention and neuroplasticity in psychopathology

Crocker, L. D., Heller, W., Warren, S. L., O'Hare, A. J., Infantolino, Z. P. & Miller, G. A., May 23 2013, In : Frontiers in Human Neuroscience. MAY

Research output: Contribution to journalReview article

Neuronal Plasticity
Psychopathology
Cognition
Emotions
Brain

Ribosomally synthesized and post-translationally modified peptide natural products: Overview and recommendations for a universal nomenclature

Arnison, P. G., Bibb, M. J., Bierbaum, G., Bowers, A. A., Bugni, T. S., Bulaj, G., Camarero, J. A., Campopiano, D. J., Challis, G. L., Clardy, J., Cotter, P. D., Craik, D. J., Dawson, M., Dittmann, E., Donadio, S., Dorrestein, P. C., Entian, K. D., Fischbach, M. A., Garavelli, J. S., Göransson, U. & 45 others, Gruber, C. W., Haft, D. H., Hemscheidt, T. K., Hertweck, C., Hill, C., Horswill, A. R., Jaspars, M., Kelly, W. L., Klinman, J. P., Kuipers, O. P., Link, A. J., Liu, W., Marahiel, M. A., Mitchell, D. A., Moll, G. N., Moore, B. S., Müller, R., Nair, S. K., Nes, I. F., Norris, G. E., Olivera, B. M., Onaka, H., Patchett, M. L., Piel, J., Reaney, M. J. T., Rebuffat, S., Ross, R. P., Sahl, H. G., Schmidt, E. W., Selsted, M. E., Severinov, K., Shen, B., Sivonen, K., Smith, L., Stein, T., Süssmuth, R. D., Tagg, J. R., Tang, G. L., Truman, A. W., Vederas, J. C., Walsh, C. T., Walton, J. D., Wenzel, S. C., Willey, J. M. & Van Der Donk, W. A., Jan 2013, In : Natural Product Reports. 30, 1, p. 108-160 53 p.

Research output: Contribution to journalReview article

Biosynthesis
Terminology
Biological Products
Peptides
compound 20

Role of T cell receptor affinity in the efficacy and specificity of adoptive T cell therapies

Stone, J. D. & Kranz, D. M., Sep 16 2013, In : Frontiers in immunology. 4, AUG, Article 244.

Research output: Contribution to journalReview article

Cell- and Tissue-Based Therapy
T-Cell Antigen Receptor
T-Lymphocytes
Antigens
Single-Chain Antibodies

Technologies for powered ankle-foot orthotic systems: Possibilities and challenges

Shorter, K. A., Xia, J., Hsiao-Wecksler, E. T., Durfee, W. K. & Kogler, G. F., Jan 1 2013, In : IEEE/ASME Transactions on Mechatronics. 18, 1, p. 337-347 11 p., 6104405.

Research output: Contribution to journalReview article

Orthotics
Damping

The AOSpine North America geriatric odontoid fracture mortality study: A retrospective review of mortality outcomes for operative versus nonoperative treatment of 322 patients with long-term follow-up

Chapman, J., Smith, J. S., Kopjar, B., Vaccaro, A. R., Arnold, P., Shaffrey, C. I. & Fehlings, M. G., Jun 1 2013, In : Spine. 38, 13, p. 1098-1104 7 p.

Research output: Contribution to journalReview article

North America
Geriatrics
Retrospective Studies
Confidence Intervals
Mortality

The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment

Evans, J. D., Brown, S. J., Hackett, K. J. J., Robinson, G., Richards, S., Lawson, D., Elsik, C., Coddington, J., Edwards, O., Emrich, S., Gabaldon, T., Goldsmith, M., Hanes, G., Misof, B., Muñoz-Torres, M., Niehuis, O., Papanicolaou, A., Pfrender, M., Poelchau, M., Purcell-Miramontes, M. & 7 others, Robertson, H. M., Ryder, O., Tagu, D., Torres, T., Zdobnov, E., Zhang, G. & Zhou, X., Sep 1 2013, In : Journal of Heredity. 104, 5, p. 595-600 6 p.

Research output: Contribution to journalReview article

Arthropods
Genomics
Agriculture
Health
Tetranychidae

The primate vaginal microbiome: comparative context and implications for human health and disease.

Stumpf, R. M., Wilson, B. A., Rivera, A., Yildirim, S., Yeoman, C. J., Polk, J. D., White, B. A. & Leigh, S. R., Dec 2013, In : American journal of physical anthropology. 152 Suppl 57, p. 119-134 16 p.

Research output: Contribution to journalReview article

Microbiota
Primates
Disease
Health
health

The quest for shape control: A history of gold nanorod synthesis

Lohse, S. E. & Murphy, C. J., Apr 23 2013, In : Chemistry of Materials. 25, 8, p. 1250-1261 12 p.

Research output: Contribution to journalReview article

Nanorods
Gold
Nanoparticles
Nanostructured materials
Aspect ratio

Visualizing the proteome: Mapping protein changes in disease states with mass spectrometry imaging

Lanni, E. J., Rubakhin, S. & Sweedler, J. V., Mar 1 2013, In : Journal of Neurochemistry. 124, 5, p. 581-583 3 p.

Research output: Contribution to journalReview article

Neuroimaging
Proteome
Mass spectrometry
Imaging techniques
Proteins
2012

A hyphenated optical trap capillary electrophoresis laser induced native fluorescence system for single-cell chemical analysis

Cecala, C., Rubakhin, S. S., Mitchell, J. W., Gillette, M. U. & Sweedler, J. V., Jul 7 2012, In : Analyst. 137, 13, p. 2965-2972 8 p.

Research output: Contribution to journalReview article

Optical Tweezers
Single-Cell Analysis
Capillary electrophoresis
Capillary Electrophoresis
chemical analysis

Applications of colloidal inorganic nanoparticles: From medicine to energy

Lohse, S. E. & Murphy, C. J., Sep 26 2012, In : Journal of the American Chemical Society. 134, 38, p. 15607-15620 14 p.

Research output: Contribution to journalReview article

medicine
Nanoparticles
Medicine
Nanotechnology
nanotechnology

Artificial activation of toxin-antitoxin systems as an antibacterial strategy

Williams, J. J. & Hergenrother, P., Jun 1 2012, In : Trends in Microbiology. 20, 6, p. 291-298 8 p.

Research output: Contribution to journalReview article

Antitoxins
Bacterial Chromosomes
Bacterial Genomes
Genes
Plasmids

Biological timekeeping

Gillette, M. U., Abbott, S. M. & Arnold, J. M., Sep 2012, In : Sleep Medicine Clinics. 7, 3, p. 427-442 16 p.

Research output: Contribution to journalReview article

Biological Clocks
Circadian Clocks
Neurobiology
Periodicity

C-H bond functionalization & synthesis in the 21st century: A brief history and prospectus

White, M. C., Nov 26 2012, In : Synlett. 23, 19, p. 2746-2748 3 p.

Research output: Contribution to journalReview article

Chemical reactivity
Molecules

Chemical treatment of poly(lactic acid) fibers to enhance the rate of thermal depolymerization

Dong, H., Esser-Kahn, A. P., Thakre, P. R., Patrick, J. F., Sottos, N. R., White, S. R. & Moore, J. S., Feb 22 2012, In : ACS Applied Materials and Interfaces. 4, 2, p. 503-509 7 p.

Research output: Contribution to journalReview article

X-Ray Microtomography
Depolymerization
Lactic acid
Hot Temperature
Trifluoroethanol

Computational methods in synthetic biology: Towards computer-aided part design

Wu, K. & Rao, C. V., Aug 1 2012, In : Current Opinion in Chemical Biology. 16, 3-4, p. 318-322 5 p.

Research output: Contribution to journalReview article

Synthetic Biology
Synthetic Genes
Computer-Aided Design
Gene Regulatory Networks
Computational methods

D-Aspartate acts as a signaling molecule in nervous and neuroendocrine systems

Ota, N., Shi, T. & Sweedler, J. V., Nov 1 2012, In : Amino Acids. 43, 5, p. 1873-1886 14 p.

Research output: Contribution to journalReview article

D-Aspartic Acid
Neurosecretory Systems
Nervous System
Molecules
Biosynthesis

Diagnostic Approach to Small Animal Bleeding Disorders

Herring, J. & McMichael, M., May 1 2012, In : Topics in Companion Animal Medicine. 27, 2, p. 73-80 8 p.

Research output: Contribution to journalReview article

Thrombelastography
Specimen Handling
hemostasis
thrombin
Hemostasis

Directed evolution: An evolving and enabling synthetic biology tool

Cobb, R. E., Si, T. & Zhao, H., Aug 1 2012, In : Current Opinion in Chemical Biology. 16, 3-4, p. 285-291 7 p.

Research output: Contribution to journalReview article

Synthetic Biology
Biological systems
Genes
Genome
Research

Discovery, biosynthesis, and engineering of lantipeptides

Knerr, P. J. & van der Donk, W. A., Jul 1 2012, In : Annual review of biochemistry. 81, p. 479-505 27 p.

Research output: Contribution to journalReview article

Bacterial Genomes
Biosynthesis
Gram-Positive Bacteria
Sulfides
Post Translational Protein Processing

Elastic modeling of bone at nanostructural level

Hamed, E. & Jasiuk, I., Mar 22 2012, In : Materials Science and Engineering R: Reports. 73, 3-4, p. 27-49 23 p.

Research output: Contribution to journalReview article

collagens
Collagen
bones
Bone
Durapatite

Estimating the distribution of probable age-at-death from dental remains of immature human fossils

Shackelford, L. L., Harris, A. E. S. & Konigsberg, L. W., Feb 1 2012, In : American journal of physical anthropology. 147, 2, p. 227-253 27 p.

Research output: Contribution to journalReview article

Fossils
Age Distribution
Tooth
death
Tooth Components

Exercise, inflammation and aging

Woods, J. A., Wilund, K. R., Martin, S. A. & Kistler, B. M., 2012, In : Aging and Disease. 3, 1, p. 130-140 11 p.

Research output: Contribution to journalReview article

Exercise
Inflammation
Chronic Disease
Anti-Inflammatory Agents
Randomized Controlled Trials

Expanding the synthetic biology toolbox: Engineering orthogonal regulators of gene expression

Rao, C. V., Oct 1 2012, In : Current Opinion in Biotechnology. 23, 5, p. 689-694 6 p.

Research output: Contribution to journalReview article

Synthetic Biology
Regulator Genes
Gene expression
Bacteria
Genes

Fragile X mental retardation protein: Past, present and future

Kim, M. & Ceman, S., Jul 23 2012, In : Current Protein and Peptide Science. 13, 4, p. 358-371 14 p.

Research output: Contribution to journalReview article

Fragile X Mental Retardation Protein
Trinucleotide Repeats
Fragile X Syndrome
Metabotropic Glutamate Receptors
Cloning