Research Output 1969 2020

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Review article
2018

Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L. & Cunningham, B. T., Jun 1 2018, In : Chemosensors. 6, 2, 13.

Research output: Contribution to journalReview article

Optical resonators
optical resonators
counting
Nanoparticles
nanoparticles

Earth BioGenome Project: Sequencing life for the future of life

Lewin, H. A., Robinson, G. E., Kress, W. J., Baker, W. J., Coddington, J., Crandall, K. A., Durbin, R., Edwards, S. V., Forest, F., Gilbert, M. T. P., Goldstein, M. M., Grigoriev, I. V., Hackett, K. J., Haussler, D., Jarvis, E. D., Johnson, W. E., Patrinos, A., Richards, S., Castilla-Rubio, J. C., Van Sluys, M. A. & 4 others, Soltis, P. S., Xu, X., Yang, H. & Zhang, G., Apr 24 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. 4325-4333 9 p.

Research output: Contribution to journalReview article

Biodiversity
Ecosystem
Planets
Endangered Species
Information Dissemination

Engineering Polymersomes for Diagnostics and Therapy

Leong, J., Teo, J. Y., Aakalu, V. K., Yang, Y. Y. & Kong, H., Apr 25 2018, In : Advanced Healthcare Materials. 7, 8, 1701276.

Research output: Contribution to journalReview article

Imaging techniques
Molecules
Controllability
Pharmaceutical Preparations
Self assembly

Engineering the Surface of Therapeutic "living" Cells

Park, J., Andrade, B., Seo, Y., Kim, M. J., Zimmerman, S. C. & Kong, H. J., Feb 28 2018, In : Chemical reviews. 118, 4, p. 1664-1690 27 p.

Research output: Contribution to journalReview article

Cell engineering
Drug Carriers
Adhesion
Tissue
Nanoparticles
Biocatalysis
Enzymes
Synthetic Biology
Metabolic engineering
Metabolic Engineering

Frequency and acceptability of adverse events after anterior cervical discectomy and fusion

Wilson, J. R., Radcliff, K., Schroeder, G., Booth, M., Lucasti, C., Fehlings, M., Ahmad, N., Vaccaro, A., Arnold, P., Sciubba, D., Ching, A., Smith, J., Shaffrey, C., Singh, K., Darden, B., Daffner, S., Cheng, I., Ghogawala, Z., Ludwig, S., Buchowski, J. & 9 others, Brodke, D., Wang, J., Lehman, R. A., Hilibrand, A., Yoon, T., Grauer, J., Dailey, A., Steinmetz, M. & Harrop, J. S., Jan 1 2018, In : Clinical spine surgery. 31, 5, p. E270-E277

Research output: Contribution to journalReview article

Diskectomy
Spine
Neurosurgery
Deglutition Disorders
Quality Improvement

Genetic accommodation and the role of ancestral plasticity in the evolution of insect eusociality

Jones, B. M. & Robinson, G. E., Dec 2018, In : Journal of Experimental Biology. 221, 23, jeb153163.

Research output: Contribution to journalReview article

eusociality
plasticity
Insects
insect
Phenotype

How does solvation in the cell affect protein folding and binding?

Davis, C. M., Gruebele, M. & Sukenik, S., Feb 2018, In : Current Opinion in Structural Biology. 48, p. 23-29 7 p.

Research output: Contribution to journalReview article

Protein Folding
Protein Binding
Proteins
Membrane Proteins

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P. J., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L. & 33 others, Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., Maccoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L. & Zhang, B., Feb 14 2018, In : Nature chemical biology. 14, 3, p. 206-214 9 p.

Research output: Contribution to journalReview article

Post Translational Protein Processing
Proteins
Proteome
Proteomics
Amino Acid Sequence

Incorporating DNA Methyltransferase Inhibitors (DNMTis) in the Treatment of Genitourinary Malignancies: A Systematic Review

Chovanec, M., Taza, F., Kalra, M., Hahn, N., Nephew, K. P., Spinella, M. J. & Albany, C., Feb 1 2018, In : Targeted Oncology. 13, 1, p. 49-60 12 p.

Research output: Contribution to journalReview article

Methyltransferases
DNA
Neoplasms
Tumor Suppressor Genes
Therapeutics

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

Davis, C. M. & Gruebele, M., Apr 3 2018, In : Biochemistry. 57, 13, p. 1929-1938 10 p.

Research output: Contribution to journalReview article

Cytology
Labeling
RNA
Protein folding
Imaging techniques

Microscopic view of lipids and their diverse biological functions

Wen, P. C., Mahinthichaichan, P., Trebesch, N., Jiang, T., Zhao, Z., Shinn, E., Wang, Y., Shekhar, M., Kapoor, K., Chan, C. K. & Tajkhorshid, E., Aug 2018, In : Current Opinion in Structural Biology. 51, p. 177-186 10 p.

Research output: Contribution to journalReview article

Lipids
Membranes
Physiological Phenomena
Lipid Bilayers
Hydrodynamics

Multichannel spectrometers in animals

Cronin, T. W., Garcia, M. & Gruev, V., Mar 2018, In : Bioinspiration and Biomimetics. 13, 2, 021001.

Research output: Contribution to journalReview article

Imaging systems
Spectrometers
Animals
Biomimetics
Invertebrates

National outcomes of in-hospital cardiopulmonary resuscitation in patients with acute kidney injury: Years 2005 - 2011

Saeed, F., Adil, M. M., Kaleem, U. M., Khan, A. S., Holley, J. L. & Damirjian, S., Nov 1 2018, In : Clinical Nephrology. 90, 5, p. 325-333 9 p.

Research output: Contribution to journalReview article

Cardiopulmonary Resuscitation
Acute Kidney Injury
Length of Stay
Hospital Mortality
Nursing Homes

Nutrigenetic contributions to dyslipidemia: A focus on physiologically relevant pathways of lipid and lipoprotein metabolism

Hannon, B. A., Khan, N. A. & Teran-Garcia, M., Oct 2 2018, In : Nutrients. 10, 10, 1404.

Research output: Contribution to journalReview article

Nutrigenomics
nutrigenomics
hyperlipidemia
Dyslipidemias
Lipid Metabolism

Of Mice, Dogs, Pigs, and Men: Choosing the Appropriate Model for Immuno-Oncology Research

Overgaard, N. H., Fan, T. M., Schachtschneider, K. M., Principe, D. R., Schook, L. B. & Jungersen, G., Dec 31 2018, In : ILAR Journal. 59, 3, p. 247-262 16 p.

Research output: Contribution to journalReview article

Oncology
Tumors
Swine
Dogs
swine

Point-of-care sensors for the management of sepsis

Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In : Nature biomedical engineering. 2, 9, p. 640-648 9 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Sepsis
Health
Sensors
Infection

Potential lymphangiogenesis therapies: Learning from current antiangiogenesis therapies—A review

Yamakawa, M., Doh, S. J., Santosa, S. M., Montana, M., Qin, E. C., Kong, H., Han, K. Y., Yu, C., Rosenblatt, M. I., Kazlauskas, A., Chang, J. H. & Azar, D. T., Nov 2018, In : Medicinal Research Reviews. 38, 6, p. 1769-1798 30 p.

Research output: Contribution to journalReview article

Lymphangiogenesis
Learning
Pharmaceutical Preparations
Vascular Endothelial Growth Factor C
Nanotechnology

Recent advances in metabolic engineering of Saccharomyces cerevisiae: New tools and their applications

Lian, J., Mishra, S. & Zhao, H., Nov 2018, In : Metabolic Engineering. 50, p. 85-108 24 p.

Research output: Contribution to journalReview article

Metabolic engineering
Metabolic Engineering
Yeast
Saccharomyces cerevisiae
Clustered Regularly Interspaced Short Palindromic Repeats

Recent developments in the application of P450 based biocatalysts

Wei, Y., Ang, E. L. & Zhao, H., Apr 2018, In : Current Opinion in Chemical Biology. 43, p. 1-7 7 p.

Research output: Contribution to journalReview article

Mixed Function Oxygenases
Enzymes
Biosynthesis
Biological Products
Cytochrome P-450 Enzyme System

Reconstitution and substrate specificity for isopentenyl pyrophosphate of the antiviral radical SAM enzyme viperin

Chakravarti, A., Selvadurai, K., Shahoei, R., Lee, H., Fatma, S., Tajkhorshid, E. & Huang, R. H., Jan 1 2018, In : Journal of Biological Chemistry. 293, 36, p. 14122-14133 12 p.

Research output: Contribution to journalReview article

Substrate Specificity
Antiviral Agents
Substrates
Enzymes
Mevalonic Acid

Sensitivity of peripheral membrane proteins to the membrane context: A case study of phosphatidylserine and the TIM proteins

Kerr, D., Tietjen, G. T., Gong, Z., Tajkhorshid, E., Adams, E. J. & Lee, K. Y. C., Oct 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 10, p. 2126-2133 8 p.

Research output: Contribution to journalReview article

T-cells
Phosphatidylserines
Mucins
Immunoglobulins
Membrane Proteins

Single Cell Neurometabolomics

Qi, M., Philip, M. C., Yang, N. & Sweedler, J. V., Jan 17 2018, In : ACS Chemical Neuroscience. 9, 1, p. 40-50 11 p.

Research output: Contribution to journalReview article

Metabolomics
Brain
Molecules
Biological systems
Nutrition
Food and Beverages
Pediatric Obesity
state law
childhood
food

Technological advances in integrating multi-kilobase DNA sequences into genomes

Gurumurthy, C. B. & Perez-Pinera, P., Sep 2018, In : Current Opinion in Biomedical Engineering. 7, p. 16-23 8 p.

Research output: Contribution to journalReview article

DNA sequences
DNA
Genes
Genome
Homologous Recombination

The Gastrointestinal Microbiome: A Review

Barko, P. C., McMichael, M. A., Swanson, K. S. & Williams, D. A., Jan 1 2018, In : Journal of veterinary internal medicine. 32, 1, p. 9-25 17 p.

Research output: Contribution to journalReview article

digestive system
Mammals
Health
Microbial Genome
mammals

The gut microbiome of nonhuman primates: Lessons in ecology and evolution

Clayton, J. B., Gomez, A., Amato, K., Knights, D., Travis, D. A., Blekhman, R., Knight, R., Leigh, S., Stumpf, R., Wolf, T., Glander, K. E., Cabana, F. & Johnson, T. J., Jun 2018, In : American journal of primatology. 80, 6, e22867.

Research output: Contribution to journalReview article

primate
Primates
digestive system
ecology
human health

The Molecular Industrial Revolution: Automated Synthesis of Small Molecules

Trobe, M. & Burke, M. D., Apr 9 2018, In : Angewandte Chemie - International Edition. 57, 16, p. 4192-4214 23 p.

Research output: Contribution to journalReview article

3D printers
Automation
Molecules
Innovation
Direction compound

Towards the generalized iterative synthesis of small molecules

Lehmann, J. W., Blair, D. J. & Burke, M. D., Jan 1 2018, In : Nature Reviews Chemistry. 2, 2, 0115.

Research output: Contribution to journalReview article

Molecules
Tall buildings
Biological Products
Macromolecules
Drug products
2017

A Closer Look at the Hippocampus and Memory

Voss, J. L., Bridge, D. J., Cohen, N. J. & Walker, J. A., Aug 2017, In : Trends in Cognitive Sciences. 21, 8, p. 577-588 12 p.

Research output: Contribution to journalReview article

Hippocampus
Brain

A New Era of Genome Integration - Simply Cut and Paste!

Liu, Z., Liang, Y., Ang, E. L. & Zhao, H., Apr 21 2017, In : ACS synthetic biology. 6, 4, p. 601-609 9 p.

Research output: Contribution to journalReview article

Ointments
Genes
Homologous Recombination
Genome
Synthetic Biology

Auditory thalamic circuits and GABAA receptor function: Putative mechanisms in tinnitus pathology

Caspary, D. M. & Llano, D. A., Jun 1 2017, In : Hearing Research. 349, p. 197-207 11 p.

Research output: Contribution to journalReview article

Tinnitus
GABA-A Receptors
Pathology
Geniculate Bodies
Auditory Cortex

Biohybrid actuators for robotics: A review of devices actuated by living cells

Ricotti, L., Trimmer, B., Feinberg, A. W., Raman, R., Parker, K. K., Bashir, R., Sitti, M., Martel, S., Dario, P. & Menciassi, A., Nov 22 2017, In : Science Robotics. 2, 12, eaaq0495.

Research output: Contribution to journalReview article

Robotics
Actuator
Actuators
Cells
Molecular Motor

Breaking the silence: new strategies for discovering novel natural products

Ren, H., Wang, B. & Zhao, H., Dec 1 2017, In : Current Opinion in Biotechnology. 48, p. 21-27 7 p.

Research output: Contribution to journalReview article

Biological Products
Multigene Family
Genes
Throughput
Pharmaceutical Preparations

C5 palsy after cervical Spine surgery: A multicenter retrospective review of 59 cases

Thompson, S. E., Smith, Z. A., Hsu, W. K., Nassr, A., Mroz, T. E., Fish, D. E., Wang, J. C., Fehlings, M. G., Tannoury, C. A., Tannoury, T., Tortolani, P. J., Traynelis, V. C., Gokaslan, Z., Hilibrand, A. S., Isaacs, R. E., Mummaneni, P. V., Chou, D., Qureshi, S. A., Cho, S. K., Baird, E. O. & 26 others, Sasso, R. C., Arnold, P. M., Buser, Z., Bydon, M., Clarke, M. J., De Giacomo, A. F., Derakhshan, A., Jobse, B., Lord, E. L., Lubelski, D., Massicotte, E. M., Steinmetz, M. P., Smith, G. A., Pace, J., Corriveau, M., Lee, S., Cha, P. I., Chatterjee, D., Gee, E. L., Mayer, E. N., McBride, O. J., Roe, A. K., Yanez, M. Y., Stroh, D. A., Than, K. D. & Riew, K. D., Apr 1 2017, In : Global Spine Journal. 7, 1_suppl, p. 64S-70S

Research output: Contribution to journalReview article

Open Access
Paralysis
Spine
Lost to Follow-Up
Incidence

Categorizing Cells on the Basis of their Chemical Profiles: Progress in Single-Cell Mass Spectrometry

Comi, T. J., Do, T. D., Rubakhin, S. S. & Sweedler, J. V., Mar 22 2017, In : Journal of the American Chemical Society. 139, 11, p. 3920-3929 10 p.

Research output: Contribution to journalReview article

Metabolites
Mass spectrometry
Amplification
amplification
Mass Spectrometry

Change in Functional Impairment, Disability, and Quality of Life Following Operative Treatment for Degenerative Cervical Myelopathy: A Systematic Review and Meta-Analysis

Fehlings, M. G., Tetreault, L. A., Kurpad, S., Brodke, D. S., Wilson, J. R., Smith, J. S., Arnold, P. M., Brodt, E. D. & Dettori, J. R., Sep 1 2017, In : Global Spine Journal. 7, 3_supplement, p. 53S-69S

Research output: Contribution to journalReview article

Open Access
Spinal Cord Diseases
Meta-Analysis
Quality of Life
Confidence Intervals
Pain
Unsaturated Fats
Unsaturated Fatty Acids
Meta-Analysis
Fatty Acids
Obesity

Clinical translation of handheld optical coherence tomography: Practical considerations and recent advancements

Monroy, G. L., Won, J., Spillman, D. R., Dsouza, R. & Boppart, S. A., Dec 2017, In : Journal of biomedical optics. 22, 12, 121715.

Research output: Contribution to journalReview article

Optical tomography
tomography
form factors
photographic developers
ecosystems

Computational optical coherence tomography [invited]

Liu, Y. Z., South, F. A., Xu, Y., Scott Carney, P. & Boppart, S. A., Mar 1 2017, In : Biomedical Optics Express. 8, 3, p. 1549-1574 26 p.

Research output: Contribution to journalReview article

Optical Coherence Tomography
imaging techniques
tomography
Physics
aberration

Dynamic hippocampal and prefrontal contributions to memory processes and representations blur the boundaries of traditional cognitive domains

Rubin, R. D., Schwarb, H., Lucas, H. D., Dulas, M. R. & Cohen, N. J., Jul 12 2017, In : Brain Sciences. 7, 7, p. 1-17 17 p.

Research output: Contribution to journalReview article

Prefrontal Cortex
Hippocampus
Aptitude
Long-Term Memory
Social Behavior

Efficacy, Safety, and Timing of Anticoagulant Thromboprophylaxis for the Prevention of Venous Thromboembolism in Patients With Acute Spinal Cord Injury: A Systematic Review

Arnold, P. M., Harrop, J. S., Merli, G., Tetreault, L. G., Kwon, B. K., Casha, S., Palmieri, K., Wilson, J. R., Fehlings, M. G., Holmer, H. K. & Norvell, D. C., Sep 1 2017, In : Global Spine Journal. 7, 3_supplement, p. 138S-150S

Research output: Contribution to journalReview article

Open Access
Venous Thromboembolism
Spinal Cord Injuries
Venous Thrombosis
Anticoagulants
Pulmonary Embolism

Efficacy and Safety of Methylprednisolone Sodium Succinate in Acute Spinal Cord Injury: A Systematic Review

Fehlings, M. G., Wilson, J. R., Harrop, J. S., Kwon, B. K., Tetreault, L. A., Arnold, P. M., Singh, J. M., Hawryluk, G. & Dettori, J. R., Sep 1 2017, In : Global Spine Journal. 7, 3_supplement, p. 116S-137S

Research output: Contribution to journalReview article

Open Access
Methylprednisolone Hemisuccinate
Spinal Cord Injuries
Safety
Wounds and Injuries
Research

Engineering biological systems using automated biofoundries

Chao, R., Mishra, S., Si, T. & Zhao, H., Jul 2017, In : Metabolic Engineering. 42, p. 98-108 11 p.

Research output: Contribution to journalReview article

Microbial Genetics
Bioengineering
Foundries
Biological systems
Biotechnology

Establishing the basis for mechanobiology-based physical therapy protocols to potentiate cellular healing and tissue regeneration

Ng, J. L., Kersh, M. E., Kilbreath, S. & Knothe Tate, M., Jun 6 2017, In : Frontiers in Physiology. 8, JUN, 303.

Research output: Contribution to journalReview article

Biophysics
Regeneration
Therapeutics
Exercise Therapy
Physical Therapists

Evaluation of adverse events in total disc replacement: A meta-analysis of FDA summary of safety and effectiveness data

Anderson, P. A., Nassr, A., Currier, B. L., Sebastian, A. S., Arnold, P. M., Fehlings, M. G., Mroz, T. E. & Riew, K. D., Apr 1 2017, In : Global Spine Journal. 7, 1_suppl, p. 76S-83S

Research output: Contribution to journalReview article

Open Access
Total Disc Replacement
Diskectomy
Meta-Analysis
Safety
Nervous System

Functional carbon nanodots for multiscale imaging and therapy

Ostadhossein, F. & Pan, D., May 1 2017, In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1436.

Research output: Contribution to journalReview article

Carbon
Imaging techniques
Drug Labeling
Nanostructures
Drug delivery

Go it alone: four-electron oxidations by mononuclear non-heme iron enzymes

Peck, S. C. & van der Donk, W. A., Apr 1 2017, In : Journal of Biological Inorganic Chemistry. 22, 2-3, p. 381-394 14 p.

Research output: Contribution to journalReview article

Iron
Electrons
Oxidation
Enzymes
Biosynthesis

Human milk oligosaccharides influence neonatal mucosal and systemic immunity

Donovan, S. M. & Comstock, S. S., Jan 1 2017, In : Annals of Nutrition and Metabolism. 69, 2, p. 42-51 10 p.

Research output: Contribution to journalReview article

Mucosal Immunity
Human Milk
Oligosaccharides
Infant Formula
Milk

Impact of peripheral hearing loss on top-down auditory processing

Lesicko, A. M. H. & Llano, D. A., Jan 1 2017, In : Hearing Research. 343, p. 4-13 10 p.

Research output: Contribution to journalReview article

Hearing Loss
Cues
Auditory Cortex
Cochlear Implants
Cochlea