Research Output 1975 2020

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Review article
2013

Directed evolution as a powerful synthetic biology tool

Cobb, R. E., Sun, N. & Zhao, H., Mar 15 2013, In : Methods. 60, 1, p. 81-90 10 p.

Research output: Contribution to journalReview article

Synthetic Biology
Biological systems
Environmental Biodegradation
Biofuels
Bioremediation

Efficacy of β-hydroxy-β-methylbutyrate supplementation in elderly and clinical populations

Fitschen, P. J., Wilson, G. J., Wilson, J. M. & Wilund, K. R., Jan 1 2013, In : Nutrition. 29, 1, p. 29-36 8 p.

Research output: Contribution to journalReview article

Muscles
Population
Leucine
Acquired Immunodeficiency Syndrome
Chronic Disease

Evidence-based medicine: The design and interpretation of noninferiority clinical trials in veterinary medicine

Freise, K. J., Lin, T. L., Fan, T. M., Recta, V. & Clark, T. P., Nov 1 2013, In : Journal of veterinary internal medicine. 27, 6, p. 1305-1317 13 p.

Research output: Contribution to journalReview article

Veterinary Medicine
Evidence-Based Medicine
veterinary medicine
clinical trials
medicine

Insights into the evolution of lanthipeptide biosynthesis

Yu, Y., Zhang, Q. & Van Der Donk, W. A., Nov 1 2013, In : Protein Science. 22, 11, p. 1478-1489 12 p.

Research output: Contribution to journalReview article

Biosynthesis
Post Translational Protein Processing
Biological Products
Peptides
Sulfides

Is SDN the de-constraining constraint of the future internet?

Crowcroft, J., Fidler, M., Nahrstedt, K. & Steinmetz, R., Oct 1 2013, In : Computer Communication Review. 43, 5, p. 13-18 6 p.

Research output: Contribution to journalReview article

Technical presentations
Internet
Software defined networking
Industry

Linking brains and brawn: Exercise and the evolution of human neurobiology

Raichlen, D. A. & Polk, J. D., Jan 1 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1750, 20122250.

Research output: Contribution to journalReview article

neurophysiology
Neurobiology
brain
Brain
exercise

Micro- and nanotechnology for HIV/AIDS diagnostics in resource-limited settings

Damhorst, G. L., Watkins, N. N. & Bashir, R., Oct 1 2013, In : IEEE Transactions on Biomedical Engineering. 60, 3, p. 715-726 12 p.

Research output: Contribution to journalReview article

Viruses
Nanotechnology
T-cells
Immune system
Blood

Microfluidic systems for studying neurotransmitters and neurotransmission

Croushore, C. A. & Sweedler, J. V., May 7 2013, In : Lab on a Chip. 13, 9, p. 1666-1676 11 p.

Research output: Contribution to journalReview article

Microfluidics
Synaptic Transmission
Neurotransmitter Agents
Molecules
Cell signaling

Microsecond folding experiments and simulations: A match is made

Prigozhin, M. B. & Gruebele, M., Mar 14 2013, In : Physical Chemistry Chemical Physics. 15, 10, p. 3372-3388 17 p.

Research output: Contribution to journalReview article

folding
Protein folding
simulation
Experiments
Refining

Molluscum contagiosum virus: Persistence pays off

Randall, C. M. H. & Shisler, J. L., Jun 1 2013, In : Future Virology. 8, 6, p. 561-573 13 p.

Research output: Contribution to journalReview article

Molluscum contagiosum virus
Molluscum Contagiosum
Viruses
Monkeypox
Inflammation

Multistep one-pot reactions combining biocatalysts and chemical catalysts for asymmetric synthesis

Denard, C. A., Hartwig, J. F. & Zhao, H., Dec 6 2013, In : ACS Catalysis. 3, 12, p. 2856-2864 9 p.

Research output: Contribution to journalReview article

Biocatalysts
Catalysts
Enzymes
Stereoselectivity
Regioselectivity

Nanoparticles for combination drug therapy

Ma, L., Kohli, M. & Smith, A., Nov 26 2013, In : ACS Nano. 7, 11, p. 9518-9525 8 p.

Research output: Contribution to journalReview article

Drug therapy
chemotherapy
Packaging
Screening
Animals

Nanostructured surfaces and detection instrumentation for photonic crystal enhanced fluorescence

Chaudhery, V., George, S., Lu, M., Pokhriyal, A. & Cunningham, B. T., May 2013, In : Sensors (Switzerland). 13, 5, p. 5561-5584 24 p.

Research output: Contribution to journalReview article

Optics and Photonics
Photonic crystals
Photons
Fluorescence
photonics

New frontiers for organismal biology

Kültz, D., Clayton, D. F., Robinson, G. E., Albertson, C., Carey, H. V., Cummings, M. E., Dewar, K., Edwards, S. V., Hofmann, H. A., Gross, L. J., Kingsolver, J. G., Meaney, M. J., Schlinger, B. A., Shingleton, A. W., Sokolowski, M. B., Somero, G. N., Stanzione, D. C. & Todgham, A. E., Jun 1 2013, In : BioScience. 63, 6, p. 464-471 8 p.

Research output: Contribution to journalReview article

Biological Sciences
organisms
genetic variation
complement
Research Design

Omega-3 fatty acids as a putative treatment for traumatic brain injury

Wang, H., Hasadsri, L., Wang, B. H., Lee, J. V., Erdman, J. W., Llano, D. A., Barbey, A. K., Wszalek, T. & Sharrock, M. F., Jun 1 2013, In : Journal of Neurotrauma. 30, 11, p. 897-906 10 p.

Research output: Contribution to journalReview article

Omega-3 Fatty Acids
Therapeutics
Wounds and Injuries
Traumatic Brain Injury
Afghanistan

Optical coherence tomography for rapid tissue screening and directed histological sectioning.

Jung, W. & Boppart, S. A., 2013, In : Studies in Health Technology and Informatics. 185, p. 109-128 20 p.

Research output: Contribution to journalReview article

Optical tomography
Optical Coherence Tomography
Screening
Tissue
Imaging techniques

Phosphonate biosynthesis and catabolism: A treasure trove of unusual enzymology

Peck, S. C. & van der Donk, W. A., Aug 1 2013, In : Current Opinion in Chemical Biology. 17, 4, p. 580-588 9 p.

Research output: Contribution to journalReview article

Organophosphonates
Biosynthesis
Biochemistry
Phosphates
Biological Products

Polymer mechanochemistry: Techniques to generate molecular force via elongational flows

May, P. A. & Moore, J. S., Sep 21 2013, In : Chemical Society Reviews. 42, 18, p. 7497-7506 10 p.

Research output: Contribution to journalReview article

Polymers
Flow fields
Chemical elements

Progress toward single cell metabolomics

Rubakhin, S. S., Lanni, E. J. & Sweedler, J. V., Feb 1 2013, In : Current Opinion in Biotechnology. 24, 1, p. 95-104 10 p.

Research output: Contribution to journalReview article

Metabolomics
Metabolites
Molecules
Microfluidics
Mass spectrometry

Quantitation of endogenous peptides using mass spectrometry based methods

Romanova, E. V., Dowd, S. E. & Sweedler, J. V., Oct 1 2013, In : Current Opinion in Chemical Biology. 17, 5, p. 801-808 8 p.

Research output: Contribution to journalReview article

Mass spectrometry
Mass Spectrometry
Peptides
Data Mining
Molecular interactions

Relationships among cognition, emotion, and motivation: Implications for intervention and neuroplasticity in psychopathology

Crocker, L. D., Heller, W., Warren, S. L., O'Hare, A. J., Infantolino, Z. P. & Miller, G. A., May 23 2013, In : Frontiers in Human Neuroscience. MAY

Research output: Contribution to journalReview article

Neuronal Plasticity
Psychopathology
Cognition
Emotions
Brain

Ribosomally synthesized and post-translationally modified peptide natural products: Overview and recommendations for a universal nomenclature

Arnison, P. G., Bibb, M. J., Bierbaum, G., Bowers, A. A., Bugni, T. S., Bulaj, G., Camarero, J. A., Campopiano, D. J., Challis, G. L., Clardy, J., Cotter, P. D., Craik, D. J., Dawson, M., Dittmann, E., Donadio, S., Dorrestein, P. C., Entian, K. D., Fischbach, M. A., Garavelli, J. S., Göransson, U. & 45 others, Gruber, C. W., Haft, D. H., Hemscheidt, T. K., Hertweck, C., Hill, C., Horswill, A. R., Jaspars, M., Kelly, W. L., Klinman, J. P., Kuipers, O. P., Link, A. J., Liu, W., Marahiel, M. A., Mitchell, D. A., Moll, G. N., Moore, B. S., Müller, R., Nair, S. K., Nes, I. F., Norris, G. E., Olivera, B. M., Onaka, H., Patchett, M. L., Piel, J., Reaney, M. J. T., Rebuffat, S., Ross, R. P., Sahl, H. G., Schmidt, E. W., Selsted, M. E., Severinov, K., Shen, B., Sivonen, K., Smith, L., Stein, T., Süssmuth, R. D., Tagg, J. R., Tang, G. L., Truman, A. W., Vederas, J. C., Walsh, C. T., Walton, J. D., Wenzel, S. C., Willey, J. M. & Van Der Donk, W. A., Jan 2013, In : Natural Product Reports. 30, 1, p. 108-160 53 p.

Research output: Contribution to journalReview article

Biosynthesis
Terminology
Biological Products
Peptides
compound 20

Role of T cell receptor affinity in the efficacy and specificity of adoptive T cell therapies

Stone, J. D. & Kranz, D. M., Sep 16 2013, In : Frontiers in immunology. 4, AUG, Article 244.

Research output: Contribution to journalReview article

Cell- and Tissue-Based Therapy
T-Cell Antigen Receptor
T-Lymphocytes
Antigens
Single-Chain Antibodies

Technologies for powered ankle-foot orthotic systems: Possibilities and challenges

Shorter, K. A., Xia, J., Hsiao-Wecksler, E. T., Durfee, W. K. & Kogler, G. F., Jan 1 2013, In : IEEE/ASME Transactions on Mechatronics. 18, 1, p. 337-347 11 p., 6104405.

Research output: Contribution to journalReview article

Orthotics
Damping

The AOSpine North America geriatric odontoid fracture mortality study: A retrospective review of mortality outcomes for operative versus nonoperative treatment of 322 patients with long-term follow-up

Chapman, J., Smith, J. S., Kopjar, B., Vaccaro, A. R., Arnold, P., Shaffrey, C. I. & Fehlings, M. G., Jun 1 2013, In : Spine. 38, 13, p. 1098-1104 7 p.

Research output: Contribution to journalReview article

North America
Geriatrics
Retrospective Studies
Confidence Intervals
Mortality

The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment

Evans, J. D., Brown, S. J., Hackett, K. J. J., Robinson, G., Richards, S., Lawson, D., Elsik, C., Coddington, J., Edwards, O., Emrich, S., Gabaldon, T., Goldsmith, M., Hanes, G., Misof, B., Muñoz-Torres, M., Niehuis, O., Papanicolaou, A., Pfrender, M., Poelchau, M., Purcell-Miramontes, M. & 7 others, Robertson, H. M., Ryder, O., Tagu, D., Torres, T., Zdobnov, E., Zhang, G. & Zhou, X., Sep 1 2013, In : Journal of Heredity. 104, 5, p. 595-600 6 p.

Research output: Contribution to journalReview article

Arthropods
Genomics
Agriculture
Health
Tetranychidae

The primate vaginal microbiome: comparative context and implications for human health and disease.

Stumpf, R. M., Wilson, B. A., Rivera, A., Yildirim, S., Yeoman, C. J., Polk, J. D., White, B. A. & Leigh, S. R., Dec 2013, In : American journal of physical anthropology. 152 Suppl 57, p. 119-134 16 p.

Research output: Contribution to journalReview article

Microbiota
Primates
Disease
Health
health

The quest for shape control: A history of gold nanorod synthesis

Lohse, S. E. & Murphy, C. J., Apr 23 2013, In : Chemistry of Materials. 25, 8, p. 1250-1261 12 p.

Research output: Contribution to journalReview article

Nanorods
Gold
Nanoparticles
Nanostructured materials
Aspect ratio

Visualizing the proteome: Mapping protein changes in disease states with mass spectrometry imaging

Lanni, E. J., Rubakhin, S. & Sweedler, J. V., Mar 1 2013, In : Journal of Neurochemistry. 124, 5, p. 581-583 3 p.

Research output: Contribution to journalReview article

Neuroimaging
Proteome
Mass spectrometry
Imaging techniques
Proteins
2014

3D biofabrication strategies for tissue engineering and regenerative medicine

Bajaj, P., Schweller, R. M., Khademhosseini, A., West, J. L. & Bashir, R., Jul 2014, In : Annual Review of Biomedical Engineering. 16, p. 247-276 30 p.

Research output: Contribution to journalReview article

Regenerative Medicine
Biocompatible Materials
Tissue Engineering
Tissue engineering
Biomaterials
Clustered Regularly Interspaced Short Palindromic Repeats
Gene therapy
Regenerative Medicine
Zinc Fingers
Transcription

A genetic perspective on glucose consumption in the cerebral cortex during human development

Caravas, J. & Wildman, D. E., Jan 1 2014, In : Diabetes, Obesity and Metabolism. 16, p. 21-25 5 p.

Research output: Contribution to journalReview article

Human Development
Cerebral Cortex
Glucose
Brain
Oxidative Phosphorylation

Anisotropic noble metal nanocrystal growth: The role of halides

Lohse, S. E., Burrows, N. D., Scarabelli, L., Liz-Marzán, L. M. & Murphy, C. J., Jan 14 2014, In : Chemistry of Materials. 26, 1, p. 34-43 10 p.

Research output: Contribution to journalReview article

Precious metals
Nanocrystals
Metals
Ions
Silver

Application of capillary electrophoresis for the early diagnosis of cancer

Yang, Z. & Sweedler, J. V., Jul 2014, In : Analytical and bioanalytical chemistry. 406, 17, p. 4013-4031 19 p.

Research output: Contribution to journalReview article

Capillary electrophoresis
Capillary Electrophoresis
Early Detection of Cancer
Microchip Electrophoresis
Biomarkers

A tale of two machines: A review of the BLAST meeting, Tucson, AZ, 20-24 January 2013

Josenhans, C., Jung, K., Rao, C. V. & Wolfe, A. J., Jan 1 2014, In : Molecular Microbiology. 91, 1, p. 6-25 20 p.

Research output: Contribution to journalReview article

Locomotion
Signal Transduction
Research Personnel

Basic Flap Design

Schultz, T. A., Cunningham, K. & Bailey, J. S., Aug 2014, In : Oral and Maxillofacial Surgery Clinics of North America. 26, 3, p. 277-303 27 p.

Research output: Contribution to journalReview article

Esthetics
Surgical Flaps
Creativity
Anatomy
Neck

Brain circadian oscillators and redox regulation in mammals

Gillette, M. U. & Wang, T. A., Jun 20 2014, In : Antioxidants and Redox Signaling. 20, 18, p. 2955-2965 11 p.

Research output: Contribution to journalReview article

Mammals
Suprachiasmatic Nucleus
Oxidation-Reduction
Brain
Circadian Rhythm

Can We Reconcile the Declarative Memory and Spatial Navigation Views on Hippocampal Function?

Eichenbaum, H. & Cohen, N. J., Aug 20 2014, In : Neuron. 83, 4, p. 764-770 7 p.

Research output: Contribution to journalReview article

Hippocampus
Research
Spatial Navigation

Circadian gating of neuronal functionality: A basis for iterative metaplasticity

Iyer, R., Wang, T. A. & Gillette, M. U., Sep 19 2014, In : Frontiers in Systems Neuroscience. 8

Research output: Contribution to journalReview article

Suprachiasmatic Nucleus
Neuronal Plasticity
Light
Intracellular Membranes
Circadian Clocks

Coherent anti-Stokes Raman scattering microscopy: Overcoming technical barriers for clinical translation

Tu, H. & Boppart, S. A., Jan 1 2014, In : Journal of Biophotonics. 7, 1-2, p. 9-22 14 p.

Research output: Contribution to journalReview article

Raman Spectrum Analysis
Raman scattering
Microscopy
Microscopic examination
tradeoffs

DNA assembly techniques for next-generation combinatorial biosynthesis of natural products

Cobb, R. E., Ning, J. C. & Zhao, H., Feb 1 2014, In : Journal of Industrial Microbiology and Biotechnology. 41, 2, p. 469-477 9 p.

Research output: Contribution to journalReview article

Biosynthesis
Biological Products
DNA
Synthetic Biology
Cloning

Does it talk the talk' on the role of basal ganglia in emotive speech processing

Hasson, U., Llano, D. A., Miceli, G. & Dick, A. S., May 15 2014, In : Behavioral and Brain Sciences. 37, 6, p. 556-557 2 p.

Research output: Contribution to journalReview article

Basal Ganglia
Emotions
emotion
Speech Processing
Auditory Processing

Effects of exercise in experimental autoimmune encephalomyelitis (an animal model of multiple sclerosis)

Klaren, R. E., Motl, R. W., Woods, J. A. & Miller, S. D., Jan 1 2014, In : Journal of Neuroimmunology. 274, 1-2, p. 14-19 6 p.

Research output: Contribution to journalReview article

Autoimmune Experimental Encephalomyelitis
Multiple Sclerosis
Animal Models
Exercise
Helper-Inducer T-Lymphocytes

Elderly Persons with ICU-Acquired Weakness: The Potential Role for β-Hydroxy-β-Methylbutyrate (HMB) Supplementation?

Rahman, A., Wilund, K., Fitschen, P. J., Jeejeebhoy, K., Agarwala, R., Drover, J. W. & Mourtzakis, M., Jul 2014, In : Journal of Parenteral and Enteral Nutrition. 38, 5, p. 567-575 9 p.

Research output: Contribution to journalReview article

Intensive Care Units
Muscles
Atrophic Muscular Disorders
Mortality
Muscle Weakness

Exploiting Issatchenkia orientalis SD108 for succinic acid production

Xiao, H., Shao, Z., Jiang, Y., Dole, S. & Zhao, H., Aug 27 2014, In : Microbial cell factories. 13, 1, 121.

Research output: Contribution to journalReview article

Organic acids
Succinic Acid
Acids
Yeast
Fermentation

Introduction to the yogurt in nutrition initiative and the first global summit on the health effects of yogurt

Donovan, S. M. & Shamir, R., May 1 2014, In : American Journal of Clinical Nutrition. 99, 5, p. 1209S-1211S

Research output: Contribution to journalReview article

Yogurt
Health
Food
Dairy Products
Insurance Benefits

Minireview: Steroid-regulated paracrine mechanisms controlling implantation

Pawar, S., Hantak, A. M., Bagchi, I. C. & Bagchi, M. K., Sep 1 2014, In : Molecular endocrinology (Baltimore, Md.). 28, 9, p. 1408-1422 15 p.

Research output: Contribution to journalReview article

Progesterone Receptors
Estrogen Receptors
Embryonic Structures
Steroids
Pregnancy

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

Pathogens
Bacteriophages
Biosensors
Light scattering
Explosions

New technologies for measuring single cell mass

Popescu, G., Park, K., Mir, M. & Bashir, R., Feb 21 2014, In : Lab on a chip. 14, 4, p. 646-652 7 p.

Research output: Contribution to journalReview article

Cells
Technology
Imaging techniques
Sensors
Medicine

Noninvasive molecular fingerprinting of host-microbiome interactions in neonates

Donovan, S. M., Wang, M., Siegel, M. H., Martin, C. R., Davidson, L. A., Ivanov, I. & Chapkin, R. S., Nov 17 2014, In : FEBS Letters. 588, 22, p. 4112-4119 8 p.

Research output: Contribution to journalReview article

Microbiota
Genes
Newborn Infant
Epithelial Cells
Infant Formula