Research Output 1975 2020

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Review article
2017

Using natural products for drug discovery: the impact of the genomics era

Zhang, M. M., Qiao, Y., Ang, E. L. & Zhao, H., May 4 2017, In : Expert Opinion on Drug Discovery. 12, 5, p. 475-487 13 p.

Research output: Contribution to journalReview article

Drug Discovery
Genomics
Biological Products
Synthetic Biology
Metagenomics

Virtual Issue on Metal-Halide Perovskite Nanocrystals - A Bright Future for Optoelectronics

Buriak, J. M., Kamat, P. V., Schanze, K. S., Alivisatos, A. P., Murphy, C. J., Schatz, G. C., Scholes, G. D., Stang, P. J. & Weiss, P. S., Nov 14 2017, In : Chemistry of Materials. 29, 21, p. 8915-8917 3 p.

Research output: Contribution to journalReview article

Metal halides
Optoelectronic devices
Nanocrystals
perovskite
2018

3D printing for preoperative planning and surgical training: a review

Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J. A., Kesavadas, T. & Bashir, R., Sep 1 2018, In : Biomedical microdevices. 20, 3, 65.

Research output: Contribution to journalReview article

Printing
Audiovisual Aids
Planning
Diagnostic Imaging
Human Body

A Bayesian definition of 'most probable' parameters

Gardoni, P. & Biscontin, G., Sep 13 2018, In : Geotechnical Research. 5, 3, p. 130-142 13 p.

Research output: Contribution to journalReview article

back analysis
Retaining walls
retaining wall
Excavation
excavation

Advancing Metabolic Engineering of Saccharomyces cerevisiae Using the CRISPR/Cas System

Lian, J., HamediRad, M. & Zhao, H., Sep 2018, In : Biotechnology Journal. 13, 9, 1700601.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Metabolic Engineering
Saccharomyces cerevisiae
Gene Knockout Techniques
Biotechnology

Attitudes and Attitude Change

Albarracin, D. & Shavitt, S., Jan 4 2018, In : Annual review of psychology. 69, p. 299-327 29 p.

Research output: Contribution to journalReview article

Social Media
Language Development
Human Development
Research
Emotions

Auditory system dysfunction in Alzheimer disease and its prodromal states: A review

Swords, G. M., Nguyen, L. T., Mudar, R. & Llano, D. A., Jul 2018, In : Ageing Research Reviews. 44, p. 49-59 11 p.

Research output: Contribution to journalReview article

Prodromal Symptoms
Alzheimer Disease
Central Auditory Diseases
Quality of Life
Pure-Tone Audiometry

Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates

Sun, H., Zhang, H., Ang, E. L. & Zhao, H., Apr 1 2018, In : Bioorganic and Medicinal Chemistry. 26, 7, p. 1275-1284 10 p.

Research output: Contribution to journalReview article

Biocatalysis
Enzymes
Pharmaceutical Preparations
Oxidoreductases
Protein Engineering

Bone regeneration strategies: Engineered scaffolds, bioactive molecules and stem cells current stage and future perspectives

Ho-Shui-Ling, A., Bolander, J., Rustom, L. E., Johnson, A. W., Luyten, F. P. & Picart, C., Oct 2018, In : Biomaterials. 180, p. 143-162 20 p.

Research output: Contribution to journalReview article

Bone Substitutes
Bone Regeneration
Stem cells
Scaffolds
Bone

Breaking the Axial Diffraction Limit: A Guide to Axial Super-Resolution Fluorescence Microscopy

Liu, W., Toussaint, K. C., Okoro, C., Zhu, D., Chen, Y., Kuang, C. & Liu, X., Aug 2018, In : Laser and Photonics Reviews. 12, 8, 1700333.

Research output: Contribution to journalReview article

Fluorescence microscopy
Diffraction
microscopy
fluorescence
diffraction

CAMP, Ca2+, pHi, and NO Regulate H-like Cation Channels That Underlie Feeding and Locomotion in the Predatory Sea Slug Pleurobranchaea californica

Green, D. J., Huang, R. C., Sudlow, L., Hatcher, N., Potgieter, K., McCrohan, C., Lee, C., Romanova, E. V., Sweedler, J. V., Gillette, M. L. & Gillette, R., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 1986-1993 8 p.

Research output: Contribution to journalReview article

Pleurobranchaea
Gastropoda
Locomotion
Nitric Oxide Synthase
Oceans and Seas

Cell-Extracellular Matrix Mechanobiology: Forceful Tools and Emerging Needs for Basic and Translational Research

Holle, A. W., Young, J. L., Van Vliet, K. J., Kamm, R. D., Discher, D., Janmey, P., Spatz, J. P. & Saif, T., Jan 10 2018, In : Unknown Journal. 18, 1, p. 1-8 8 p.

Research output: Contribution to journalReview article

emerging
Mechanics
cues
Signal transduction
Neurology

Circadian redox rhythms in the regulation of neuronal excitability

Bothwell, M. Y. & Gillette, M. L., May 1 2018, In : Free Radical Biology and Medicine. 119, p. 45-55 11 p.

Research output: Contribution to journalReview article

Circadian Rhythm
Oxidation-Reduction
Suprachiasmatic Nucleus
Membranes
Ion Channels

Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L. & Cunningham, B. T., Jun 1 2018, In : Chemosensors. 6, 2, 13.

Research output: Contribution to journalReview article

Optical resonators
optical resonators
counting
Nanoparticles
nanoparticles

Earth BioGenome Project: Sequencing life for the future of life

Lewin, H. A., Robinson, G. E., Kress, W. J., Baker, W. J., Coddington, J., Crandall, K. A., Durbin, R., Edwards, S. V., Forest, F., Gilbert, M. T. P., Goldstein, M. M., Grigoriev, I. V., Hackett, K. J., Haussler, D., Jarvis, E. D., Johnson, W. E., Patrinos, A., Richards, S., Castilla-Rubio, J. C., Van Sluys, M. A. & 4 others, Soltis, P. S., Xu, X., Yang, H. & Zhang, G., Apr 24 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. 4325-4333 9 p.

Research output: Contribution to journalReview article

Biodiversity
Ecosystem
Planets
Endangered Species
Information Dissemination

Engineering Polymersomes for Diagnostics and Therapy

Leong, J., Teo, J. Y., Aakalu, V. K., Yang, Y. Y. & Kong, H., Apr 25 2018, In : Advanced Healthcare Materials. 7, 8, 1701276.

Research output: Contribution to journalReview article

Imaging techniques
Molecules
Controllability
Pharmaceutical Preparations
Self assembly

Engineering the Surface of Therapeutic "living" Cells

Park, J., Andrade, B., Seo, Y., Kim, M. J., Zimmerman, S. C. & Kong, H. J., Feb 28 2018, In : Chemical reviews. 118, 4, p. 1664-1690 27 p.

Research output: Contribution to journalReview article

Cell engineering
Drug Carriers
Adhesion
Tissue
Nanoparticles
Biocatalysis
Enzymes
Synthetic Biology
Metabolic engineering
Metabolic Engineering

Frequency and acceptability of adverse events after anterior cervical discectomy and fusion

Wilson, J. R., Radcliff, K., Schroeder, G., Booth, M., Lucasti, C., Fehlings, M., Ahmad, N., Vaccaro, A., Arnold, P., Sciubba, D., Ching, A., Smith, J., Shaffrey, C., Singh, K., Darden, B., Daffner, S., Cheng, I., Ghogawala, Z., Ludwig, S., Buchowski, J. & 9 others, Brodke, D., Wang, J., Lehman, R. A., Hilibrand, A., Yoon, T., Grauer, J., Dailey, A., Steinmetz, M. & Harrop, J. S., Jan 1 2018, In : Clinical spine surgery. 31, 5, p. E270-E277

Research output: Contribution to journalReview article

Diskectomy
Spine
Neurosurgery
Deglutition Disorders
Quality Improvement

Genetic accommodation and the role of ancestral plasticity in the evolution of insect eusociality

Jones, B. M. & Robinson, G. E., Dec 2018, In : Journal of Experimental Biology. 221, 23, jeb153163.

Research output: Contribution to journalReview article

eusociality
plasticity
Insects
insect
Phenotype

How does solvation in the cell affect protein folding and binding?

Davis, C. M., Gruebele, M. & Sukenik, S., Feb 2018, In : Current Opinion in Structural Biology. 48, p. 23-29 7 p.

Research output: Contribution to journalReview article

Protein Folding
Protein Binding
Proteins
Membrane Proteins

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P. J., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L. & 33 others, Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., Maccoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L. & Zhang, B., Feb 14 2018, In : Nature chemical biology. 14, 3, p. 206-214 9 p.

Research output: Contribution to journalReview article

Post Translational Protein Processing
Proteins
Proteome
Proteomics
Amino Acid Sequence

Incorporating DNA Methyltransferase Inhibitors (DNMTis) in the Treatment of Genitourinary Malignancies: A Systematic Review

Chovanec, M., Taza, F., Kalra, M., Hahn, N., Nephew, K. P., Spinella, M. J. & Albany, C., Feb 1 2018, In : Targeted Oncology. 13, 1, p. 49-60 12 p.

Research output: Contribution to journalReview article

Methyltransferases
DNA
Neoplasms
Tumor Suppressor Genes
Therapeutics

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

Davis, C. M. & Gruebele, M., Apr 3 2018, In : Biochemistry. 57, 13, p. 1929-1938 10 p.

Research output: Contribution to journalReview article

Cytology
Labeling
RNA
Protein folding
Imaging techniques

Microscopic view of lipids and their diverse biological functions

Wen, P. C., Mahinthichaichan, P., Trebesch, N., Jiang, T., Zhao, Z., Shinn, E., Wang, Y., Shekhar, M., Kapoor, K., Chan, C. K. & Tajkhorshid, E., Aug 2018, In : Current Opinion in Structural Biology. 51, p. 177-186 10 p.

Research output: Contribution to journalReview article

Lipids
Membranes
Physiological Phenomena
Lipid Bilayers
Hydrodynamics

Multichannel spectrometers in animals

Cronin, T. W., Garcia, M. & Gruev, V., Mar 2018, In : Bioinspiration and Biomimetics. 13, 2, 021001.

Research output: Contribution to journalReview article

Imaging systems
Spectrometers
Animals
Biomimetics
Invertebrates

National outcomes of in-hospital cardiopulmonary resuscitation in patients with acute kidney injury: Years 2005 - 2011

Saeed, F., Adil, M. M., Kaleem, U. M., Khan, A. S., Holley, J. L. & Damirjian, S., Nov 1 2018, In : Clinical Nephrology. 90, 5, p. 325-333 9 p.

Research output: Contribution to journalReview article

Cardiopulmonary Resuscitation
Acute Kidney Injury
Length of Stay
Hospital Mortality
Nursing Homes

Nutrigenetic contributions to dyslipidemia: A focus on physiologically relevant pathways of lipid and lipoprotein metabolism

Hannon, B. A., Khan, N. A. & Teran-Garcia, M., Oct 2 2018, In : Nutrients. 10, 10, 1404.

Research output: Contribution to journalReview article

Nutrigenomics
nutrigenomics
hyperlipidemia
Dyslipidemias
Lipid Metabolism

Of Mice, Dogs, Pigs, and Men: Choosing the Appropriate Model for Immuno-Oncology Research

Overgaard, N. H., Fan, T. M., Schachtschneider, K. M., Principe, D. R., Schook, L. B. & Jungersen, G., Dec 31 2018, In : ILAR Journal. 59, 3, p. 247-262 16 p.

Research output: Contribution to journalReview article

Oncology
Tumors
Swine
Dogs
swine

Point-of-care sensors for the management of sepsis

Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In : Nature biomedical engineering. 2, 9, p. 640-648 9 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Sepsis
Health
Sensors
Infection

Potential lymphangiogenesis therapies: Learning from current antiangiogenesis therapies—A review

Yamakawa, M., Doh, S. J., Santosa, S. M., Montana, M., Qin, E. C., Kong, H., Han, K. Y., Yu, C., Rosenblatt, M. I., Kazlauskas, A., Chang, J. H. & Azar, D. T., Nov 2018, In : Medicinal Research Reviews. 38, 6, p. 1769-1798 30 p.

Research output: Contribution to journalReview article

Lymphangiogenesis
Learning
Pharmaceutical Preparations
Vascular Endothelial Growth Factor C
Nanotechnology

Recent advances in metabolic engineering of Saccharomyces cerevisiae: New tools and their applications

Lian, J., Mishra, S. & Zhao, H., Nov 2018, In : Metabolic Engineering. 50, p. 85-108 24 p.

Research output: Contribution to journalReview article

Metabolic engineering
Metabolic Engineering
Yeast
Saccharomyces cerevisiae
Clustered Regularly Interspaced Short Palindromic Repeats

Recent developments in the application of P450 based biocatalysts

Wei, Y., Ang, E. L. & Zhao, H., Apr 2018, In : Current Opinion in Chemical Biology. 43, p. 1-7 7 p.

Research output: Contribution to journalReview article

Mixed Function Oxygenases
Enzymes
Biosynthesis
Biological Products
Cytochrome P-450 Enzyme System

Reconstitution and substrate specificity for isopentenyl pyrophosphate of the antiviral radical SAM enzyme viperin

Chakravarti, A., Selvadurai, K., Shahoei, R., Lee, H., Fatma, S., Tajkhorshid, E. & Huang, R. H., Jan 1 2018, In : Journal of Biological Chemistry. 293, 36, p. 14122-14133 12 p.

Research output: Contribution to journalReview article

Substrate Specificity
Antiviral Agents
Substrates
Enzymes
Mevalonic Acid

Sensitivity of peripheral membrane proteins to the membrane context: A case study of phosphatidylserine and the TIM proteins

Kerr, D., Tietjen, G. T., Gong, Z., Tajkhorshid, E., Adams, E. J. & Lee, K. Y. C., Oct 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 10, p. 2126-2133 8 p.

Research output: Contribution to journalReview article

T-cells
Phosphatidylserines
Mucins
Immunoglobulins
Membrane Proteins

Single Cell Neurometabolomics

Qi, M., Philip, M. C., Yang, N. & Sweedler, J. V., Jan 17 2018, In : ACS Chemical Neuroscience. 9, 1, p. 40-50 11 p.

Research output: Contribution to journalReview article

Metabolomics
Brain
Molecules
Biological systems
Nutrition
Food and Beverages
Pediatric Obesity
state law
childhood
food

Technological advances in integrating multi-kilobase DNA sequences into genomes

Gurumurthy, C. B. & Perez-Pinera, P., Sep 2018, In : Current Opinion in Biomedical Engineering. 7, p. 16-23 8 p.

Research output: Contribution to journalReview article

DNA sequences
DNA
Genes
Genome
Homologous Recombination

The Gastrointestinal Microbiome: A Review

Barko, P. C., McMichael, M. A., Swanson, K. S. & Williams, D. A., Jan 1 2018, In : Journal of veterinary internal medicine. 32, 1, p. 9-25 17 p.

Research output: Contribution to journalReview article

digestive system
Mammals
Health
Microbial Genome
mammals

The gut microbiome of nonhuman primates: Lessons in ecology and evolution

Clayton, J. B., Gomez, A., Amato, K., Knights, D., Travis, D. A., Blekhman, R., Knight, R., Leigh, S., Stumpf, R., Wolf, T., Glander, K. E., Cabana, F. & Johnson, T. J., Jun 2018, In : American journal of primatology. 80, 6, e22867.

Research output: Contribution to journalReview article

primate
Primates
digestive system
ecology
human health

The Molecular Industrial Revolution: Automated Synthesis of Small Molecules

Trobe, M. & Burke, M. D., Apr 9 2018, In : Angewandte Chemie - International Edition. 57, 16, p. 4192-4214 23 p.

Research output: Contribution to journalReview article

3D printers
Automation
Molecules
Innovation
Direction compound

Towards the generalized iterative synthesis of small molecules

Lehmann, J. W., Blair, D. J. & Burke, M., Jan 1 2018, In : Nature Reviews Chemistry. 2, 2, 0115.

Research output: Contribution to journalReview article

Molecules
Tall buildings
Biological Products
Macromolecules
Drug products
2019

A small-molecule competitive inhibitor of phosphatidic acid binding by the AAA+ protein NSF/Sec18 blocks the SNARE-priming stage of vacuole fusion

Sparks, R. P., Arango, A. S., Starr, M. L., Aboff, Z. L., Hurst, L. R., Rivera-Kohr, D. A., Zhang, C., Harnden, K. A., Jenkins, J. L., Guida, W. C., Tajkhorshid, E. & Fratti, R. A., Jan 1 2019, In : Journal of Biological Chemistry. 294, 46, p. 17168-17185 18 p.

Research output: Contribution to journalReview article

Open Access
N-Ethylmaleimide-Sensitive Proteins
SNARE Proteins
Phosphatidic Acids
Vacuoles
Carrier Proteins

BDNF, endurance activity, and mechanisms underlying the evolution of hominin brains

Hill, T. & Polk, J. D., Jan 2019, In : American journal of physical anthropology. 168, p. 47-62 16 p.

Research output: Contribution to journalReview article

endurance
Brain-Derived Neurotrophic Factor
Hominidae
brain
Brain

Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation

Muller, M. P., Jiang, T., Sun, C., Lihan, M., Pant, S., Mahinthichaichan, P., Trifan, A. & Tajkhorshid, E., May 8 2019, In : Chemical reviews. 119, 9, p. 6086-6161 76 p.

Research output: Contribution to journalReview article

Membrane Proteins
Modulation
Lipids
Proteins
Molecular dynamics

Computational Dissection of Membrane Transport at a Microscopic Level

Jiang, T., Wen, P. C., Trebesch, N., Zhao, Z., Pant, S., Kapoor, K., Shekhar, M. & Tajkhorshid, E., Jan 1 2019, (Accepted/In press) In : Trends in Biochemical Sciences.

Research output: Contribution to journalReview article

Dissection
Membrane Transport Proteins
Membranes
Molecular Dynamics Simulation
Computational methods

Congress of neurological surgeons systematic review and evidence-based guidelines on the evaluation and treatment of patients with thoracolumbar spine trauma: Surgical approaches

Anderson, P. A., Raksin, P. B., Arnold, P. M., Chi, J. H., Dailey, A. T., Dhall, S. S., Eichholz, K. M., Harrop, J. S., Hoh, D. J., Qureshi, S., Rabb, C. H., Kaiser, M. G. & O'Toole, J. E., Jan 1 2019, In : Clinical Neurosurgery. 84, 1, p. E56-E58

Research output: Contribution to journalReview article

Open Access
Spine
Guidelines
Wounds and Injuries
Physicians
Therapeutics

Congress of neurological surgeons systematic review and evidence-based guidelines on the evaluation and treatment of patients with thoracolumbar spine trauma: Prophylaxis and treatment of thromboembolic events

Raksin, P. B., Harrop, J. S., Anderson, P. A., Arnold, P. M., Chi, J. H., Dailey, A. T., Dhall, S. S., Eichholz, K. M., Hoh, D. J., Qureshi, S., Rabb, C. H., Kaiser, M. G. & O'Toole, J. E., Jan 1 2019, In : Clinical Neurosurgery. 84, 1, p. E39-E42

Research output: Contribution to journalReview article

Open Access
Venous Thromboembolism
Pulmonary Embolism
Spine
Thorax
Guidelines

Congress of neurological surgeons systematic review and evidence-based guidelines on the evaluation and treatment of patients with thoracolumbar spine trauma: Hemodynamic management

Dhall, S. S., Dailey, A. T., Anderson, P. A., Arnold, P. M., Chi, J. H., Eichholz, K. M., Harrop, J. S., Hoh, D. J., Qureshi, S., Rabb, C. H., Raksin, P. B., Kaiser, M. G. & O'Toole, J. E., Jan 1 2019, In : Clinical Neurosurgery. 84, 1, p. E43-E45

Research output: Contribution to journalReview article

Open Access
Arterial Pressure
Spine
Hemodynamics
Guidelines
Wounds and Injuries

Congress of neurological surgeons systematic review and evidence-based guidelines on the evaluation and treatment of patients with thoracolumbar spine trauma: Classification of injury

Dailey, A. T., Arnold, P. M., Anderson, P. A., Chi, J. H., Dhall, S. S., Eichholz, K. M., Harrop, J. S., Hoh, D. J., Qureshi, S., Rabb, C. H., Raksin, P. B., Kaiser, M. G. & O'Toole, J. E., Jan 1 2019, In : Clinical Neurosurgery. 84, 1, p. E24-E27

Research output: Contribution to journalReview article

Open Access
Spine
Guidelines
Wounds and Injuries
Therapeutics
Neurosurgeons