Research Output 1977 2020

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Review article
2020

Emerging molecular biology tools and strategies for engineering natural product biosynthesis

Xu, W., Klumbys, E., Ang, E. L. & Zhao, H., Jun 2020, In : Metabolic Engineering Communications. 10, e00108.

Research output: Contribution to journalReview article

Open Access
Molecular biology
Biosynthesis
Biological Products
Molecular Biology
Enzymes
2019

A small-molecule competitive inhibitor of phosphatidic acid binding by the AAA+ protein NSF/Sec18 blocks the SNARE-priming stage of vacuole fusion

Sparks, R. P., Arango, A. S., Starr, M. L., Aboff, Z. L., Hurst, L. R., Rivera-Kohr, D. A., Zhang, C., Harnden, K. A., Jenkins, J. L., Guida, W. C., Tajkhorshid, E. & Fratti, R. A., Jan 1 2019, In : Journal of Biological Chemistry. 294, 46, p. 17168-17185 18 p.

Research output: Contribution to journalReview article

Open Access
N-Ethylmaleimide-Sensitive Proteins
SNARE Proteins
Phosphatidic Acids
Vacuoles
Carrier Proteins

BDNF, endurance activity, and mechanisms underlying the evolution of hominin brains

Hill, T. & Polk, J. D., Jan 2019, In : American journal of physical anthropology. 168, p. 47-62 16 p.

Research output: Contribution to journalReview article

endurance
Brain-Derived Neurotrophic Factor
Hominidae
brain
Brain

Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation

Muller, M. P., Jiang, T., Sun, C., Lihan, M., Pant, S., Mahinthichaichan, P., Trifan, A. & Tajkhorshid, E., May 8 2019, In : Chemical reviews. 119, 9, p. 6086-6161 76 p.

Research output: Contribution to journalReview article

Membrane Proteins
Modulation
Lipids
Proteins
Molecular dynamics

Darwinian bee-keeping: lessons from the wild

Robinson, G., Jul 1 2019, In : Nature. 571, 7763, p. 34-35

Research output: Contribution to journalReview article

Effectiveness of Workplace Lactation Interventions on Breastfeeding Outcomes in the United States: An Updated Systematic Review

Kim, J. H., Shin, J. C. & Donovan, S. M., Feb 1 2019, In : Journal of Human Lactation. 35, 1, p. 100-113 14 p.

Research output: Contribution to journalReview article

Breast Feeding
Lactation
Workplace
Breast
Parental Leave

Exercise and the Gut Microbiome: A Review of the Evidence, Potential Mechanisms, and Implications for Human Health

Mailing, L. J., Allen, J. M., Buford, T. W., Fields, C. J. & Woods, J. A., Apr 1 2019, In : Exercise and Sport Sciences Reviews. 47, 2, p. 75-85 11 p.

Research output: Contribution to journalReview article

Health
Gastrointestinal Tract
Exercise
Gastrointestinal Microbiome

Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures

Neumann, E. K., Do, T. D., Comi, T. J. & Sweedler, J. V., Jul 8 2019, In : Angewandte Chemie - International Edition. 58, 28, p. 9348-9364 17 p.

Research output: Contribution to journalReview article

Chemical analysis
Throughput
Imaging techniques
Data storage equipment

Health benefits of yogurt among infants and toddlers aged 4 to 24 months: A systematic review

Donovan, S. M. & Rao, G., Jan 1 2019, In : Nutrition reviews. 77, 7, p. 478-486 9 p.

Research output: Contribution to journalReview article

Yogurt
Insurance Benefits
Cohort Studies
Cultured Milk Products
Information Storage and Retrieval

Inhibitory control of emotional processing: Theoretical and empirical considerations

Bartholomew, M. E., Heller, W. & Miller, G. A., Jan 1 2019, In : International Journal of Psychophysiology.

Research output: Contribution to journalReview article

Emotions
Research
Inhibition (Psychology)

Integration of machine learning and pharmacogenomic biomarkers for predicting response to antidepressant treatment: Can computational intelligence be used to augment clinical assessments?

Athreya, A. P., Iyer, R., Wang, L., Weinshilboum, R. M. & Bobo, W. V., Jan 1 2019, In : Pharmacogenomics. 20, 14, p. 983-988 6 p.

Research output: Contribution to journalReview article

Open Access
Artificial Intelligence
Pharmacogenetics
Antidepressive Agents
Biomarkers
Machine Learning

Investigating brain d-serine: Advocacy for good practices

Mothet, J. P., Billard, J. M., Pollegioni, L., Coyle, J. T. & Sweedler, J. V., May 2019, In : Acta Physiologica. 226, 1, e13257.

Research output: Contribution to journalReview article

Serine
Amino Acids
Brain
Molecular Models
Practice Guidelines

Pasteurella multocida: Genotypes and genomics

Peng, Z., Wang, X., Zhou, R., Chen, H., Wilson, B. A. & Wu, B., Jan 1 2019, In : Microbiology and Molecular Biology Reviews. 83, 4, e00014-19.

Research output: Contribution to journalReview article

Pasteurella multocida
Genomics
Genotype
Genome
Virulence

Polarisation signals: A new currency for communication

Marshall, N. J., Powell, S. B., Cronin, T. W., Caldwell, R. L., Johnsen, S., Gruev, V., Chiou, T. H. S., Roberts, N. W. & How, M. J., Feb 2019, In : Journal of Experimental Biology. 222, 3, jeb134213.

Research output: Contribution to journalReview article

polarized light
currency
animal communication
polarization
Communication

Preface

Donovan, S. M., German, J. B., Lönnerdal, B. & Lucas, A., Jan 1 2019, In : Nestle Nutrition Institute Workshop Series. 90, p. VII-IX

Research output: Contribution to journalReview article

Open Access

Provocative questions in osteosarcoma basic and translational biology: A report from the Children's Oncology Group

Roberts, R. D., Lizardo, M. M., Reed, D. R., Hingorani, P., Glover, J., Allen-Rhoades, W., Fan, T., Khanna, C., Sweet-Cordero, E. A., Cash, T., Bishop, M. W., Hegde, M., Sertil, A. R., Koelsche, C., Mirabello, L., Malkin, D., Sorensen, P. H., Meltzer, P. S., Janeway, K. A., Gorlick, R. & 1 others, Crompton, B. D., Oct 15 2019, In : Cancer. 125, 20, p. 3514-3525 12 p.

Research output: Contribution to journalReview article

Osteosarcoma
Poisons
Research
Epigenomics
Lung Diseases

Reactive oxygen species-responsive drug delivery systems for the treatment of neurodegenerative diseases

Ballance, W. C., Qin, E. C., Chung, H. J., Gillette, M. L. & Kong, H. J., Oct 2019, In : Biomaterials. 217, 119292.

Research output: Contribution to journalReview article

Neurodegenerative diseases
Drug Delivery Systems
Neurodegenerative Diseases
Reactive Oxygen Species
Oxygen

Skeletal Muscle Adaptations and Passive Muscle Stiffness in Cerebral Palsy: A Literature Review and Conceptual Model

Tisha, A. L., Armstrong, A. A., Wagoner Johnson, A. J. & Lopez-Ortiz, C., Feb 2019, In : Journal of Applied Biomechanics. 35, 1, p. 68-79 12 p.

Research output: Contribution to journalReview article

Cerebral Palsy
Skeletal Muscle
Muscles
Physiological Adaptation
Sarcomeres

The challenge of converting gram-positive-only compounds into broad-spectrum antibiotics

Richter, M. F. & Hergenrother, P. J., Jan 1 2019, In : Annals of the New York Academy of Sciences. 1435, 1, p. 18-38 21 p.

Research output: Contribution to journalReview article

Anti-Bacterial Agents
Escherichia coli
Gram-Negative Bacterial Infections
Guidelines
Pathogens

The potential of retinoids for combination therapy of lung cancer: Updates and future directions

Tripathi, S. K., Pandey, K., Panda, M., Spinella, M. J., Rengasamy, K. RR. & Biswal, B. K., Sep 2019, In : Pharmacological Research. 147, 104331.

Research output: Contribution to journalReview article

Retinoids
Lung Neoplasms
Therapeutics
Tretinoin
Antineoplastic Agents

Visual hallucinations, thalamocortical physiology and Lewy body disease: A review

Esmaeeli, S., Murphy, K., Swords, G. M., Ibrahim, B. A., Brown, J. W. & Llano, D. A., Aug 2019, In : Neuroscience and Biobehavioral Reviews. 103, p. 337-351 15 p.

Research output: Contribution to journalReview article

Lewy Body Disease
Hallucinations
Thalamic Nuclei
Thalamus
Arousal
2018

3D printing for preoperative planning and surgical training: a review

Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J. A., Kesavadas, T. & Bashir, R., Sep 1 2018, In : Biomedical microdevices. 20, 3, 65.

Research output: Contribution to journalReview article

Printing
Audiovisual Aids
Planning
Diagnostic Imaging
Human Body

A Bayesian definition of 'most probable' parameters

Gardoni, P. & Biscontin, G., Sep 13 2018, In : Geotechnical Research. 5, 3, p. 130-142 13 p.

Research output: Contribution to journalReview article

back analysis
Retaining walls
retaining wall
Excavation
excavation

Advancing Metabolic Engineering of Saccharomyces cerevisiae Using the CRISPR/Cas System

Lian, J., HamediRad, M. & Zhao, H., Sep 2018, In : Biotechnology Journal. 13, 9, 1700601.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Metabolic Engineering
Saccharomyces cerevisiae
Gene Knockout Techniques
Biotechnology

Attitudes and Attitude Change

Albarracin, D. & Shavitt, S., Jan 4 2018, In : Annual review of psychology. 69, p. 299-327 29 p.

Research output: Contribution to journalReview article

Social Media
Language Development
Human Development
Research
Emotions

Auditory system dysfunction in Alzheimer disease and its prodromal states: A review

Swords, G. M., Nguyen, L. T., Mudar, R. & Llano, D. A., Jul 2018, In : Ageing Research Reviews. 44, p. 49-59 11 p.

Research output: Contribution to journalReview article

Prodromal Symptoms
Alzheimer Disease
Central Auditory Diseases
Quality of Life
Pure-Tone Audiometry

Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates

Sun, H., Zhang, H., Ang, E. L. & Zhao, H., Apr 1 2018, In : Bioorganic and Medicinal Chemistry. 26, 7, p. 1275-1284 10 p.

Research output: Contribution to journalReview article

Biocatalysis
Enzymes
Pharmaceutical Preparations
Oxidoreductases
Protein Engineering

Bone regeneration strategies: Engineered scaffolds, bioactive molecules and stem cells current stage and future perspectives

Ho-Shui-Ling, A., Bolander, J., Rustom, L. E., Johnson, A. W., Luyten, F. P. & Picart, C., Oct 2018, In : Biomaterials. 180, p. 143-162 20 p.

Research output: Contribution to journalReview article

Bone Substitutes
Bone Regeneration
Stem cells
Scaffolds
Bone

Breaking the Axial Diffraction Limit: A Guide to Axial Super-Resolution Fluorescence Microscopy

Liu, W., Toussaint, K. C., Okoro, C., Zhu, D., Chen, Y., Kuang, C. & Liu, X., Aug 2018, In : Laser and Photonics Reviews. 12, 8, 1700333.

Research output: Contribution to journalReview article

Fluorescence microscopy
Diffraction
microscopy
fluorescence
diffraction

CAMP, Ca2+, pHi, and NO Regulate H-like Cation Channels That Underlie Feeding and Locomotion in the Predatory Sea Slug Pleurobranchaea californica

Green, D. J., Huang, R. C., Sudlow, L., Hatcher, N., Potgieter, K., McCrohan, C., Lee, C., Romanova, E. V., Sweedler, J. V., Gillette, M. L. & Gillette, R., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 1986-1993 8 p.

Research output: Contribution to journalReview article

Pleurobranchaea
Gastropoda
Locomotion
Nitric Oxide Synthase
Oceans and Seas

Cell-Extracellular Matrix Mechanobiology: Forceful Tools and Emerging Needs for Basic and Translational Research

Holle, A. W., Young, J. L., Van Vliet, K. J., Kamm, R. D., Discher, D., Janmey, P., Spatz, J. P. & Saif, T., Jan 10 2018, In : Unknown Journal. 18, 1, p. 1-8 8 p.

Research output: Contribution to journalReview article

emerging
Mechanics
cues
Signal transduction
Neurology

Circadian redox rhythms in the regulation of neuronal excitability

Bothwell, M. Y. & Gillette, M. L., May 1 2018, In : Free Radical Biology and Medicine. 119, p. 45-55 11 p.

Research output: Contribution to journalReview article

Circadian Rhythm
Oxidation-Reduction
Suprachiasmatic Nucleus
Membranes
Ion Channels

Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L. & Cunningham, B. T., Jun 1 2018, In : Chemosensors. 6, 2, 13.

Research output: Contribution to journalReview article

Optical resonators
optical resonators
counting
Nanoparticles
nanoparticles

Earth BioGenome Project: Sequencing life for the future of life

Lewin, H. A., Robinson, G. E., Kress, W. J., Baker, W. J., Coddington, J., Crandall, K. A., Durbin, R., Edwards, S. V., Forest, F., Gilbert, M. T. P., Goldstein, M. M., Grigoriev, I. V., Hackett, K. J., Haussler, D., Jarvis, E. D., Johnson, W. E., Patrinos, A., Richards, S., Castilla-Rubio, J. C., Van Sluys, M. A. & 4 others, Soltis, P. S., Xu, X., Yang, H. & Zhang, G., Apr 24 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. 4325-4333 9 p.

Research output: Contribution to journalReview article

Biodiversity
Ecosystem
Planets
Endangered Species
Information Dissemination

Engineering Polymersomes for Diagnostics and Therapy

Leong, J., Teo, J. Y., Aakalu, V. K., Yang, Y. Y. & Kong, H. J., Apr 25 2018, In : Advanced Healthcare Materials. 7, 8, 1701276.

Research output: Contribution to journalReview article

Imaging techniques
Molecules
Controllability
Pharmaceutical Preparations
Self assembly

Engineering the Surface of Therapeutic "living" Cells

Park, J., Andrade, B., Seo, Y., Kim, M. J., Zimmerman, S. C. & Kong, H. J., Feb 28 2018, In : Chemical reviews. 118, 4, p. 1664-1690 27 p.

Research output: Contribution to journalReview article

Cell engineering
Drug Carriers
Adhesion
Tissue
Nanoparticles
Biocatalysis
Enzymes
Synthetic Biology
Metabolic engineering
Metabolic Engineering

Genetic accommodation and the role of ancestral plasticity in the evolution of insect eusociality

Jones, B. M. & Robinson, G. E., Dec 2018, In : Journal of Experimental Biology. 221, 23, jeb153163.

Research output: Contribution to journalReview article

eusociality
plasticity
Insects
insect
Phenotype

How does solvation in the cell affect protein folding and binding?

Davis, C. M., Gruebele, M. & Sukenik, S., Feb 2018, In : Current Opinion in Structural Biology. 48, p. 23-29 7 p.

Research output: Contribution to journalReview article

Protein Folding
Protein Binding
Proteins
Membrane Proteins

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P. J., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L. & 33 others, Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., Maccoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L. & Zhang, B., Feb 14 2018, In : Nature chemical biology. 14, 3, p. 206-214 9 p.

Research output: Contribution to journalReview article

Post Translational Protein Processing
Proteins
Proteome
Proteomics
Amino Acid Sequence

Incorporating DNA Methyltransferase Inhibitors (DNMTis) in the Treatment of Genitourinary Malignancies: A Systematic Review

Chovanec, M., Taza, F., Kalra, M., Hahn, N., Nephew, K. P., Spinella, M. J. & Albany, C., Feb 1 2018, In : Targeted Oncology. 13, 1, p. 49-60 12 p.

Research output: Contribution to journalReview article

Methyltransferases
DNA
Neoplasms
Tumor Suppressor Genes
Therapeutics

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

Davis, C. M. & Gruebele, M., Apr 3 2018, In : Biochemistry. 57, 13, p. 1929-1938 10 p.

Research output: Contribution to journalReview article

Cytology
Labeling
RNA
Protein folding
Imaging techniques

Microscopic view of lipids and their diverse biological functions

Wen, P. C., Mahinthichaichan, P., Trebesch, N., Jiang, T., Zhao, Z., Shinn, E., Wang, Y., Shekhar, M., Kapoor, K., Chan, C. K. & Tajkhorshid, E., Aug 2018, In : Current Opinion in Structural Biology. 51, p. 177-186 10 p.

Research output: Contribution to journalReview article

Lipids
Membranes
Physiological Phenomena
Lipid Bilayers
Hydrodynamics

Multichannel spectrometers in animals

Cronin, T. W., Garcia, M. & Gruev, V., Mar 2018, In : Bioinspiration and Biomimetics. 13, 2, 021001.

Research output: Contribution to journalReview article

Imaging systems
Spectrometers
Animals
Biomimetics
Invertebrates

National outcomes of in-hospital cardiopulmonary resuscitation in patients with acute kidney injury: Years 2005 - 2011

Saeed, F., Adil, M. M., Kaleem, U. M., Khan, A. S., Holley, J. L. & Damirjian, S., Nov 1 2018, In : Clinical Nephrology. 90, 5, p. 325-333 9 p.

Research output: Contribution to journalReview article

Cardiopulmonary Resuscitation
Acute Kidney Injury
Length of Stay
Hospital Mortality
Nursing Homes

Nutrigenetic contributions to dyslipidemia: A focus on physiologically relevant pathways of lipid and lipoprotein metabolism

Hannon, B. A., Khan, N. A. & Teran-Garcia, M., Oct 2 2018, In : Nutrients. 10, 10, 1404.

Research output: Contribution to journalReview article

Nutrigenomics
nutrigenomics
hyperlipidemia
Dyslipidemias
Lipid Metabolism

Of Mice, Dogs, Pigs, and Men: Choosing the Appropriate Model for Immuno-Oncology Research

Overgaard, N. H., Fan, T. M., Schachtschneider, K. M., Principe, D. R., Schook, L. B. & Jungersen, G., Dec 31 2018, In : ILAR Journal. 59, 3, p. 247-262 16 p.

Research output: Contribution to journalReview article

Oncology
Tumors
Swine
Dogs
swine

Point-of-care sensors for the management of sepsis

Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In : Nature biomedical engineering. 2, 9, p. 640-648 9 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Sepsis
Health
Sensors
Infection

Potential lymphangiogenesis therapies: Learning from current antiangiogenesis therapies—A review

Yamakawa, M., Doh, S. J., Santosa, S. M., Montana, M., Qin, E. C., Kong, H., Han, K. Y., Yu, C., Rosenblatt, M. I., Kazlauskas, A., Chang, J. H. & Azar, D. T., Nov 2018, In : Medicinal Research Reviews. 38, 6, p. 1769-1798 30 p.

Research output: Contribution to journalReview article

Lymphangiogenesis
Learning
Pharmaceutical Preparations
Vascular Endothelial Growth Factor C
Nanotechnology

Recent advances in metabolic engineering of Saccharomyces cerevisiae: New tools and their applications

Lian, J., Mishra, S. & Zhao, H., Nov 2018, In : Metabolic Engineering. 50, p. 85-108 24 p.

Research output: Contribution to journalReview article

Metabolic engineering
Metabolic Engineering
Yeast
Saccharomyces cerevisiae
Clustered Regularly Interspaced Short Palindromic Repeats