Carle Illinois College of Medicine

Research Output 1975 2020

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Conference article
2018

Annotating gene sets by mining large literature collections with protein networks

Wang, S., Ma, J., Yu, M. K., Zheng, F., Huang, E. W., Han, J., Peng, J. & Ideker, T., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 602-613 12 p.

Research output: Contribution to journalConference article

Genes
Proteins
Biological Ontologies
Natural Language Processing
Literature

Intersecting identities of women in engineering

Mendenhall, R., Cross, K. J., Amos, J. R., Clancy, K. B. H., Imoukhuede, P. U. II. & Cromley, J. G., Jun 23 2018, In : ASEE Annual Conference and Exposition, Conference Proceedings. 2018-June

Research output: Contribution to journalConference article

Large-scale integration of heterogeneous pharmacogenomic data for identifying drug mechanism of action

Luo, Y., Wang, S., Xiao, J. & Peng, J., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 44-55 12 p.

Research output: Contribution to journalConference article

LSI circuits
Pharmacogenetics
Bipolar Disorder
Pharmaceutical Preparations
Information Storage and Retrieval

Probabilistic Model and LRFD Resistance Factors for the Tip Resistance of Drilled Shafts in Soft Sedimentary Rock Based on Axial Load Tests

Asem, P., Long, J. H. & Gardoni, P., Jan 1 2018, In : Geotechnical Special Publication. 2018-March, GSP 299, p. 1-49 49 p.

Research output: Contribution to journalConference article

fracture initiation
Sedimentary rocks
soft rock
Axial loads
shaft
2017
Curricula
Education
Teaching
Students
Bioengineering

Digital prototyping by multidisciplinary teams

Leake, J. M., Weightman, D. I. & Batmunkh, B., Jun 24 2017, In : ASEE Annual Conference and Exposition, Conference Proceedings. 2017-June, 23 p.

Research output: Contribution to journalConference article

Students
Computer aided design
Product design
Printing
Testbeds

EEG-GRAPH: A factor-graph-based model for capturing spatial, temporal, and observational relationships in electroencephalograms

Varatharajah, Y., Chong, M. J., Saboo, K., Berry, B., Brinkmann, B., Worrell, G. & Iyer, R. K., Jan 1 2017, In : Advances in Neural Information Processing Systems. 2017-December, p. 5372-5381 10 p.

Research output: Contribution to journalConference article

Electroencephalography
Brain
Polynomials
Sampling

Probability models to assess the seismic safety of rigid block-like structures and the effectiveness of two safety devices

Contento, A., Gardoni, P., Egidio, A. D. & De Leo, A. M., Jan 1 2017, In : Procedia Engineering. 199, p. 1164-1169 6 p.

Research output: Contribution to journalConference article

Safety devices
Seismic response
Pendulums
Nonlinear equations
Equations of motion

Scalable visualization for high-dimensional single-cell data

Kim, J., Russell, N. & Peng, J., Jan 1 2017, In : Pacific Symposium on Biocomputing. 0, 212679, p. 623-634 12 p.

Research output: Contribution to journalConference article

Open Access
Visualization
Tissue
Sampling
Single-Cell Analysis
Technology

The double bind of race and gender: A look into the experiences of women of color in engineering

Cross, K. J., Clancy, K. B. H., Mendenhall, R., Imoukhuede, P. U. II. & Amos, J. R., Jun 24 2017, In : ASEE Annual Conference and Exposition, Conference Proceedings. 2017-June

Research output: Contribution to journalConference article

Color
Students
Engineering education
Education
Engineers

Work in Progress: Design of a First-Year Rhetoric Course for Engineering Students

Zahid, M. U., Groundwater, E. S., Li, Y., Elliott, C. M., Smith, A. M., Trinkle, D., Ritter, K. A., Carney, P. S., Pool, M. A. & Jensen, K. J., Jun 24 2017, In : ASEE Annual Conference and Exposition, Conference Proceedings. 2017-June, 13 p.

Research output: Contribution to journalConference article

Students
Engineers
Technical writing
Accreditation
Curricula
2015

A semiconductor bio-electrical platform with addressable thermal control circuits for accelerated bioassay development

Chen, T. T., Wen, C. H., Huang, J. C., Peng, Y. C., Liu, S., Su, S. H., Cheng, L. H., Lai, H. C., Liao, T. C., Lai, F. L., Cheng, C. W., Yang, C. K., Yang, J. H., Hsieh, Y. J., Salm, E., Reddy, B., Tsui, F., Liu, Y. S., Bashir, R. & Chen, M., Feb 20 2015, In : Technical Digest - International Electron Devices Meeting, IEDM. 2015-February, February, p. 15.4.1-15.4.4 7047058.

Research output: Contribution to journalConference article

bioassay
Bioassay
platforms
Pixels
pixels

Control challenges in synthetic biology

Rao, C. V., Jul 1 2015, In : IFAC-PapersOnLine. 28, 8, p. 996-1001 6 p.

Research output: Contribution to journalConference article

Automation
Process engineering
Systems engineering
Robotics
Scheduling

Developing a Smart Grid cybersecurity education platform and a preliminary assessment of its first application

Yardley, T., Uludag, S., Nahrstedt, K. & Sauer, P., Feb 17 2015, In : Proceedings - Frontiers in Education Conference, FIE. 2015-February, February, 7044273.

Research output: Contribution to journalConference article

Education
education
Taxonomies
Aging of materials
re-education
Magnetic resonance imaging
Patterning
Occlusion
Image Processing
Image processing

The thalamotectal system: An ancient projection for modulating the auditory midbrain

Patel, M. B., Sons, S., Yang, L., Taha, G. A., Llano, D. A., Lesicko, A. M. H. & Yudintsev, G., Nov 2 2015, In : Proceedings of Meetings on Acoustics. 25, 1, 010004.

Research output: Contribution to journalConference article

neurons
thalamus
projection
mice
frogs

Towards designing and developing curriculum for the challenges of the smart grid education

Uludag, S., Sauer, P., Nahrstedt, K. & Yardley, T., Feb 17 2015, In : Proceedings - Frontiers in Education Conference, FIE. 2015-February, February, 7044469.

Research output: Contribution to journalConference article

Curricula
Education
curriculum
electrical engineer
computer scientist
2014

Analysis and diagnosis of SLA violations in a production saas cloud

Martino, C. D., Chen, D., Goel, G., Ganesan, R., Kalbarczyk, Z. T. & Iyer, R. K., Dec 11 2014, In : Proceedings - International Symposium on Software Reliability Engineering, ISSRE. p. 178-188 11 p., 6982625.

Research output: Contribution to journalConference article

Production platforms
Failure modes
Availability
Industry
2012

Dielectric behavior of Silica/Poly(dimethylsiloxane) nanocomposites. nano size effects

Ibrahim, I. A. M., Zikry, A. A. F., Sharaf, M. A., Mark, J. E., Jacob, K., Jasiuk, I. M. & Tannenbaumn, R., Dec 1 2012, In : IOP Conference Series: Materials Science and Engineering. 40, 1, 012011.

Research output: Contribution to journalConference article

Polydimethylsiloxane
Silicon Dioxide
Fillers
Nanocomposites
Silica

Elastic behavior of silica/poly(dimethylsiloxane) nanocomposites: Nano-size effects

Ibrahim, I. A. M., Zikry, A. A. F., Sharaf, M. A., Mark, J. E., Jacob, K., Jasiuk, I. M. & Tannenbaumn, R., Dec 1 2012, In : IOP Conference Series: Materials Science and Engineering. 40, 1, 012008.

Research output: Contribution to journalConference article

Polydimethylsiloxane
Silicon Dioxide
Fillers
Nanocomposites
Silica
2011

Poly(amino acid)s-mediated synthesis of spatially organized Pt nanoparticles

Jeong, J. H., Haan, J., Cha, C., Chu, D. & Kong, H., Aug 25 2011, In : ACS National Meeting Book of Abstracts.

Research output: Contribution to journalConference article

Amino acids
Nanoparticles
Sol-gels
Amino Acids
Metal nanoparticles

SERS sensors for biomedical tubing

Choi, C. J., Wu, H. Y. & Cunningham, B. T., Dec 1 2011, In : Procedia Engineering. 25, p. 76-79 4 p.

Research output: Contribution to journalConference article

Tubing
Raman spectroscopy
Sensors
Plastics
Fabrication
2010

Experimental evidence for wolf shifts of cyclostationary fields

Schoonover, R. W., Lavarello, R. J., Oelze, M. L. & Scott Carney, P., Dec 1 2010, In : Optics InfoBase Conference Papers.

Research output: Contribution to journalConference article

wolves
Laser modes
Statistics
statistics
Spectroscopy
2009

Microstructure characterization in cement paste using backscattered diffuse ultrasound

Goueygou, M., Popovics, J., Hall, K., Oelze, M. & Lafhaj, Z., May 5 2009, In : AIP Conference Proceedings. 1096, p. 1528-1535 8 p.

Research output: Contribution to journalConference article

cements
microstructure
porosity
air
clumps

Optical pulse shaping for selective excitation of coherent molecular vibrations by stimulated Raman scattering

Joseph, B., Geddes, Marks, D. L. & Boppart, S. A., Jun 1 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7183, 718311.

Research output: Contribution to journalConference article

Optical pulse shaping
Molecular vibrations
Stimulated Raman scattering
Raman Spectrum Analysis
Vibration
2008

Development of NF membrane based on rigid star amphiphiles

Lu, Y., Suzuki, T., Jiang, M., Mariñas, B. J., Granick, S. & Moore, J. S., Jan 1 2008, In : ACS, Division of Environmental Chemistry - Preprints of Extended Abstracts. 48, 1, p. 404-406 3 p.

Research output: Contribution to journalConference article

Amphiphiles
Stars
membrane
Membranes

Two Approaches for tomographic density imaging using inverse scattering

Lavarello, R. J. & Oelze, M. L., Dec 1 2008, In : Proceedings - IEEE Ultrasonics Symposium. p. 1298-1301 4 p., 4803573.

Research output: Contribution to journalConference article

inverse scattering
deuterium fluorides
acoustics
functionals
matrices
2007

Reliable on-demand management operations for large-scale distributed applications

Liang, J., Gupta, I. & Nahrstedt, K., Oct 1 2007, In : Operating Systems Review (ACM). 41, 5, p. 82-88 7 p.

Research output: Contribution to journalConference article

Overlay networks
Bandwidth
Data storage equipment
Monitoring
2005
Optical tomography
Optical Coherence Tomography
Least-Squares Analysis
tomography
Scattering

An architectural framework for detecting process hangs/crashes

Nakka, N., Saggese, G. P., Kalbarczyk, Z. T. & Iyer, R. K., Sep 26 2005, In : Lecture Notes in Computer Science. 3463, p. 103-121 19 p.

Research output: Contribution to journalConference article

Crash
Hardware
Instrumentation
Detectors
Error detection

Application of Perceptual Difference Model (PDM) on regularization techniques of parallel MR imaging

Huo, D., Xu, D., Ying, L., Liang, Z-P. & Wilson, D., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 476-483 8 p., 52.

Research output: Contribution to journalConference article

Image quality
Imaging techniques
sensitivity
ratings
Magnetic resonance

AVPUC: Automatic video production with user customization

Yu, B. & Nahrstedt, K., Jul 21 2005, In : Proceedings of SPIE - The International Society for Optical Engineering. 5680, p. 203-215 13 p., 21.

Research output: Contribution to journalConference article

Customization
evaluation
Video cameras
Camera
cameras

Characterization of plasmon-resonant gold nanorods as near-infrared optical contrast agents investigated using a double-integrating sphere system

Oldenburg, A., Zweifel, D. A., Xu, C., Wei, A. & Boppart, S. A., Aug 16 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5703, p. 50-60 11 p., 08.

Research output: Contribution to journalConference article

Nanotubes
Nanorods
Gold
Contrast Media
nanorods

Gaussian beam deconvolution in optical coherence tomography

Ralston, T. S., Marks, D., Kamalabadi, F. & Boppart, S. A., Jul 21 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5701, p. 1-12 12 p., 01.

Research output: Contribution to journalConference article

Gaussian beams
Optical tomography
Optical Coherence Tomography
Deconvolution
tomography

Molecularly-sensitive optical ranging using nonlinear interferometric vibrational imaging

Marks, D. L., Vinegoni, C., Bredfeldt, J. S. & Boppart, S. A., Jul 21 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5690, p. 174-181 8 p., 31.

Research output: Contribution to journalConference article

Raman Spectrum Analysis
Optical Coherence Tomography
numerical aperture
tomography
Raman spectra

Nonlinear interferometric vibrational imaging: Optical ranging and spatial localization of CARS

Boppart, S. A., Marks, D. L., Bredfeldt, J. S. & Vinegoni, C., Jul 21 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5700, p. 60-69 10 p., 15.

Research output: Contribution to journalConference article

Molecular Imaging
Raman Spectrum Analysis
Optical Imaging
Optical Coherence Tomography
Raman scattering

Optical coherence tomography of cell dynamics in three-dimensional engineered tissues

Tan, W., Desai, T. A., Leckband, D. & Boppart, S. A., Jul 21 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5699, p. 102-110 9 p., 16.

Research output: Contribution to journalConference article

Optical tomography
Optical Coherence Tomography
tomography
Tissue
Imaging techniques

Service composition for advanced multimedia applications

Liang, J. & Nahrstedt, K., Jul 21 2005, In : Proceedings of SPIE - The International Society for Optical Engineering. 5680, p. 228-240 13 p., 23.

Research output: Contribution to journalConference article

Multimedia Applications
Service Composition
multimedia
Data Flow
Chemical analysis
2004

BioMEMS to bionanotechnology: State-of-the-art in integrated biochips and future prospects

Gupta, A., Li, H., Gomez, R., Chang, W. J., Koo, Y. M., Chang, H., Andreadakis, G., Akin, D. & Bashir, R., Dec 1 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5593, p. 340-353 14 p., 54.

Research output: Contribution to journalConference article

Biochips
Micro-electro-mechanical Systems
Viruses
Biological Systems
Subsystem

Channel-aware throughput fairness in multi-cell wireless LANs

Shah, S. H. & Nahrstedt, K., Dec 1 2004, In : IEEE Vehicular Technology Conference. 60, 5, p. 3511-3515 5 p.

Research output: Contribution to journalConference article

Wireless LAN
Fairness
Local area networks
Throughput
IEEE 802.11

Hierarchical application aware error detection and recovery

Iyer, R. K., Sep 20 2004, In : Proceedings - Design Automation Conference. 1 p.

Research output: Contribution to journalConference article

Error detection
Hardware
Recovery

Imaging of Mixing Dynamics in Micromixers Using Microscopy and Optical Coherence Tomography

Xi, C., Marks, D., Parikh, D. S., Raskin, L. & Boppart, S. A., May 10 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5345, p. 206-213 8 p.

Research output: Contribution to journalConference article

Optical Coherence Tomography
Optical tomography
Microscopy
3D
Microscopic examination

Nonlinear interferometric vibrational imaging of molecular species

Bredfeldt, J. S., Marks, D. L., Vinegoni, C., Hambir, S., Dlott, D. & Boppart, S., Oct 27 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5321, p. 149-156 8 p.

Research output: Contribution to journalConference article

Raman Spectra
Raman scattering
Stokes
Imaging
Imaging techniques

Process group management in cross-layer adaptation

Yuan, W. & Nahrstedt, K., Dec 1 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5305, p. 55-68 14 p.

Research output: Contribution to journalConference article

Cross-layer
Program processors
Dependent
Energy utilization
Scheduling

Pulse shaping strategies for nonlinear interferometric vibrational imaging optimized for biomolecular imaging

Marks, D. L., Vinegoni, C., Bredfeldt, J. S. & Boppart, S. A., Dec 1 2004, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 26 VII, p. 5300-5303 4 p.

Research output: Contribution to journalConference article

Pulse shaping
Raman Spectrum Analysis
Raman scattering
Radiation
Stray light

Quantifying non-functional requirements: A process oriented approach

Hill, R., Wang, J. & Nahrstedt, K., Dec 1 2004, In : Proceedings of the IEEE International Conference on Requirements Engineering. p. 352-353 2 p.

Research output: Contribution to journalConference article

Concretes

Real-time digital design for an optical coherence tomography acquisition and processing system

Ralston, T. S., Mayen, J. A., Marks, D. & Boppart, S. A., Dec 1 2004, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5, 13, p. 159-170 12 p., 31.

Research output: Contribution to journalConference article

Optical tomography
Optical Coherence Tomography
Data acquisition
acquisition
tomography

Source-based QoS service routing in distributed service networks

Jin, J. & Nahrstedt, K., Aug 30 2004, In : IEEE International Conference on Communications. 4, p. 2036-2041 6 p.

Research output: Contribution to journalConference article

Quality of service
Middleware
Chemical analysis

Structural and functional imaging of engineered tissue development using an integrated OCT and multi-photon microscope

Fahrner, L. J., Tan, W., Vinegoni, C., Eurell, T. E. & Boppart, S. A., Oct 27 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5319, p. 1-10 10 p.

Research output: Contribution to journalConference article

Optical Coherence Tomography
Optical tomography
Microscope
Photon
Microscopes

Truncation effects in sense reconstruction

Yuan, L., Ying, L. & Liang, Z-P., Dec 1 2004, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 26 II, p. 1136-1139 4 p.

Research output: Contribution to journalConference article

Imaging techniques