Research Output 1969 2020

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2019

Larger omental adipocytes correlate with greater Fetuin-A reduction following sleeve gastrectomy

Robinson, K. N., Rowitz, B. M., Oliphant, U. J., Donovan, S. M. & Teran-Garcia, M. D. L., May 6 2019, In : BMC Obesity. 6, 1, 15.

Research output: Contribution to journalArticle

Open Access
alpha-2-HS-Glycoprotein
Gastrectomy
Adipocytes
Insulin Resistance
Ambulatory Surgical Procedures

Lipid Analysis of 30 000 Individual Rodent Cerebellar Cells Using High-Resolution Mass Spectrometry

Neumann, E. K., Ellis, J. F., Triplett, A. E., Rubakhin, S. & Sweedler, J. V., Jan 1 2019, In : Analytical chemistry.

Research output: Contribution to journalArticle

Mass spectrometry
Lipids
Cyclotron resonance
Rodentia
Ionization
Lipids
Neurons
Ionization
Mass spectrometry
Desorption

Localized Dielectric Loss Heating in Dielectrophoresis Devices

Kwak, T. J., Hossen, I., Bashir, R., Chang, W. J. & Lee, C. H., Dec 1 2019, In : Scientific reports. 9, 1, 18977.

Research output: Contribution to journalArticle

Open Access
Heating
Equipment and Supplies
Temperature
Electrodes
Hot Temperature

Local wavefront mapping in tissue using computational adaptive optics OCT

South, F. A., Liu, Y. Z., Huang, P. C., Kohlfarber, T. & Boppart, S. A., Mar 1 2019, In : Optics Letters. 44, 5, p. 1186-1189 4 p.

Research output: Contribution to journalArticle

adaptive optics
aberration
tomography
high resolution
defects

Locking Two Rigid-body Bundles in an Outward-Facing Conformation: The Ion-coupling Mechanism in a LeuT-fold Transporter

Li, J., Zhao, Z. & Tajkhorshid, E., Dec 1 2019, In : Scientific reports. 9, 1, 19479.

Research output: Contribution to journalArticle

Open Access
Molecular Dynamics Simulation
Ions
Binding Sites
Proteins

Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle

Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., Ko, E., Platt, M. O. & Bashir, R., Jul 1 2019, In : Tissue Engineering - Part A. 25, 13-14, p. 1023-1036 14 p.

Research output: Contribution to journalArticle

Cryopreservation
Muscle
Skeletal Muscle
Tissue
Freezing

Machine Learning-Assisted Array-Based Biomolecular Sensing Using Surface-Functionalized Carbon Dots

Pandit, S., Banerjee, T., Srivastava, I., Nie, S. & Pan, D., Jan 1 2019, In : ACS Sensors. 4, 10, p. 2730-2737 8 p.

Research output: Contribution to journalArticle

machine learning
Pattern recognition
Learning systems
Carbon
pattern recognition

Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction

Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M. D., Im, S. G., Bashir, R. & Kong, H., Mar 20 2019, In : Advanced Science. 6, 6, 1801521.

Research output: Contribution to journalArticle

Neuromuscular Junction
Skeletal Muscle Fibers
Synaptic Transmission
Topography
topography

Mechanical properties of 3D printed polymeric Gyroid cellular structures: Experimental and finite element study

Abueidda, D. W., Elhebeary, M., Shiang, C. S. A., Pang, S., Abu Al-Rub, R. K. & Jasiuk, I. M., Mar 5 2019, In : Materials and Design. 165, 107597.

Research output: Contribution to journalArticle

Finite element method
Mechanical properties
Energy absorption
Compressive strength
Printing

Mechanistic interpretation of non-coding variants for discovering transcriptional regulators of drug response

Xie, X., Hanson, C. & Sinha, S., Jul 30 2019, In : BMC biology. 17, 1, 62.

Research output: Contribution to journalArticle

Open Access
phenotype
drug
Transcription Factors
transcription factors
drugs

Mechanistic Studies of the Kinase Domains of Class IV Lanthipeptide Synthetases

Hegemann, J. D., Shi, L., Gross, M. L. & Van Der Donk, W. A., Jun 5 2019, In : ACS chemical biology. 14, 7, p. 1583-1592 10 p.

Research output: Contribution to journalArticle

Ligases
Phosphotransferases
Protein Sorting Signals
Proteins
Enzymes

Mechano-acoustic sensing of physiological processes and body motions via a soft wireless device placed at the suprasternal notch

Lee, K. H., Ni, X., Lee, J. Y., Arafa, H., Pe, D. J., Xu, S., Avila, R., Irie, M., Lee, J. H., Easterlin, R. L., Kim, D. H., Chung, H. U., Olabisi, O. O., Getaneh, S., Chung, E., Hill, M., Bell, J., Jang, H., Liu, C., Park, J. B. & 12 others, Kim, J., Kim, S. B., Mehta, S., Pharr, M., Tzavelis, A., Reeder, J. T., Huang, I., Deng, Y., Xie, Z., Davies, C. R., Huang, Y. & Rogers, J. A., Jan 1 2019, (Accepted/In press) In : Nature biomedical engineering.

Research output: Contribution to journalArticle

Physiological Phenomena
Deglutition
Vibration
Acoustics
Stethoscopes

Metagenomic binning through low-density hashing

Luo, Y., Yu, Y. W., Zeng, J., Berger, B. & Peng, J., Jan 15 2019, In : Bioinformatics. 35, 2, p. 219-226 8 p.

Research output: Contribution to journalArticle

Open Access
Metagenomics
Binning
Hashing
Bioinformatics
Computational Biology

Metal-independent variants of phosphoglycerate mutase promote resistance to nutritional immunity and retention of glycolysis during infection

Radin, J. N., Kelliher, J. L., Solórzano, P. K. P., Grim, K. P., Ramezanifard, R., Slauch, J. M. & Kehl-Fie, T. E., Jul 2019, In : PLoS pathogens. 15, 7, e1007971.

Research output: Contribution to journalArticle

Open Access
Phosphoglycerate Mutase
Glycolysis
Manganese
Immunity
Metals

Microcavity-Mediated Spectrally Tunable Amplification of Absorption in Plasmonic Nanoantennas

Huang, Q. & Cunningham, B. T., Aug 14 2019, In : Nano letters. 19, 8, p. 5297-5303 7 p.

Research output: Contribution to journalArticle

Microcavities
Amplification
photonics
Hybrid systems
Photonics

Microscopic Characterization of GRP1 PH Domain Interaction with Anionic Membranes

Pant, S. & Tajkhorshid, E., Jan 1 2019, (Accepted/In press) In : Journal of Computational Chemistry. 41, 6, p. 489-499 11 p.

Research output: Contribution to journalArticle

Homology
Membrane
Membranes
Interaction
Lipids

Mineralization in micropores of calcium phosphate scaffolds

Rustom, L. E., Poellmann, M. J. & Wagoner Johnson, A. J., Jan 1 2019, In : Acta Biomaterialia. 83, p. 435-455 21 p.

Research output: Contribution to journalArticle

Calcium phosphate
Scaffolds
Bone
Bone and Bones
Bone Development

Modeling of Osteoprobe indentation on bone

Idkaidek, A. & Jasiuk, I. M., Feb 2019, In : Journal of the Mechanical Behavior of Biomedical Materials. 90, p. 365-373 9 p.

Research output: Contribution to journalArticle

Indentation
Bone
Yield stress
Elastic moduli
Viscosity

Modular Syntheses of Phenanthroindolizidine Natural Products

Jo, Y. I., Burke, M. D. & Cheon, C. H., Jun 7 2019, In : Organic Letters. 21, 11, p. 4201-4204 4 p.

Research output: Contribution to journalArticle

Boronic Acids
Vanadium
Biological Products
Bromides
Alkaloids

Modulating Noncovalent Cross-links with Molecular Switches

Epstein, E. S., Martinetti, L., Kollarigowda, R. H., Carey-De La Torre, O., Moore, J. S., Ewoldt, R. H. & Braun, P. V., Feb 27 2019, In : Journal of the American Chemical Society. 141, 8, p. 3597-3604 8 p.

Research output: Contribution to journalArticle

polymer
Metals
Switches
Metal ions
Polymers

Modulation of anticipatory postural adjustments using a powered ankle orthosis in people with Parkinson's disease and freezing of gait

Petrucci, M. N., MacKinnon, C. D. & Hsiao-Wecksler, E. T., Jul 2019, In : Gait and Posture. 72, p. 188-194 7 p.

Research output: Contribution to journalArticle

Social Adjustment
Orthotic Devices
Gait
Ankle
Freezing

Molecular sciences made personal: Developing curiosity in general and organic chemistry with a multi-semester utility value intervention

Zavala, J. A., Chadha, R., Steele, D. M., Ray, C. & Moore, J. S., Jan 1 2019, In : ACS Symposium Series. 1341, p. 105-118 14 p.

Research output: Contribution to journalArticle

Students
Biochemistry
Organic Chemistry
Nutrition
Acids

Monolayer MoS 2 Nanoribbon Transistors Fabricated by Scanning Probe Lithography

Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., Van Der Zande, A. M. & King, W. P., Mar 13 2019, In : Nano letters. 19, 3, p. 2092-2098 7 p.

Research output: Contribution to journalArticle

Nanoribbons
Carbon Nanotubes
Lithography
Monolayers
Transistors

Morphology of the Musculus Uvulae In Vivo Using MRI and 3D Modeling Among Adults With Normal Anatomy and Preliminary Comparisons to Cleft Palate Anatomy

Perry, J. L., Chen, J. Y., Kotlarek, K. J., Haenssler, A., Sutton, B. P., Kuehn, D. P., Sitzman, T. J. & Fang, X., Sep 1 2019, In : Cleft Palate-Craniofacial Journal. 56, 8, p. 993-1000 8 p.

Research output: Contribution to journalArticle

Uvula
Cleft Palate
Anatomy
Muscles
Nose

Msx Homeobox Genes Act Downstream of BMP2 to Regulate Endometrial Decidualization in Mice and in Humans

Nallasamy, S., Kaya Okur, H. S., Bhurke, A., Davila, J., Li, Q., Young, S. L., Taylor, R. N., Bagchi, M. K. & Bagchi, I. C., Jan 1 2019, In : Endocrinology. 160, 7, p. 1631-1644 14 p.

Research output: Contribution to journalArticle

Bone Morphogenetic Protein 2
Homeobox Genes
Stromal Cells
Uterus
Gene Expression Profiling

Multicolor Mechanochromism of a Polymer/Silica Composite with Dual Distinct Mechanophores

Kosuge, T., Zhu, X., Lau, V. M., Aoki, D., Martinez, T. J., Moore, J. S. & Otsuka, H., Feb 6 2019, In : Journal of the American Chemical Society. 141, 5, p. 1898-1902 5 p.

Research output: Contribution to journalArticle

Silicon Dioxide
Polymers
polymer
Color
silica

Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol

Park, H. M., Satta, R., Davis, R. G., Goo, Y. A., Leduc, R. D., Fellers, R. T., Greer, J. B., Romanova, E. V., Rubakhin, S. S., Tai, R., Thomas, P. M., Sweedler, J. V., Kelleher, N. L., Patrie, S. M. & Lasek, A. W., Nov 1 2019, In : Journal of Proteome Research. 18, 11, p. 3999-4012 14 p.

Research output: Contribution to journalArticle

Cocaine
Proteomics
Estradiol
Brain
Estrogens

Multi-functional genome-wide CRISPR system for high throughput genotype–phenotype mapping

Lian, J., Schultz, C., Cao, M., HamediRad, M. & Zhao, H., Dec 1 2019, In : Nature communications. 10, 1, 5794.

Research output: Contribution to journalArticle

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
genome
Genes
Throughput
Genome

Multiple cancer-specific antigens are targeted by a chimeric antigen receptor on a single cancer cell

He, Y., Schreiber, K., Wolf, S. P., Wen, F., Steentoft, C., Zerweck, J., Steiner, M., Sharma, P., Michael Shepard, H., Posey, A., June, C. H., Mandel, U., Clausen, H., Leisegang, M., Meredith, S. C., Kranz, D. M. & Schreiber, H., Oct 17 2019, In : JCI Insight. 4, 21, e130416.

Research output: Contribution to journalArticle

Open Access
Antigen Receptors
Antigens
Neoplasms
T-Cell Antigen Receptor Specificity
Tumor Escape

Multiplexed and tunable transcriptional activation by promoter insertion using nuclease-assisted vector integration

Brown, A., Winter, J., Gapinske, M., Tague, N., Woods, W. S. & Perez-Pinera, P., Jul 9 2019, In : Nucleic acids research. 47, 12, p. e67

Research output: Contribution to journalArticle

Open Access
Transcriptional Activation
Cell Engineering
Genes
Organism Cloning
Transcription Factors

Multi-scale dynamics at the glassy silica surface

Nguyen, H. A., Liao, C., Wallum, A., Lyding, J. & Gruebele, M., Nov 7 2019, In : Journal of Chemical Physics. 151, 17, 174502.

Research output: Contribution to journalArticle

Silicon Dioxide
silicon dioxide
Glass
glass
Entropy

Multivalent Polymer-Peptide Conjugates: A General Platform for Inhibiting Amyloid Beta Peptide Aggregation

Jiang, X., Halmes, A. J., Licari, G., Smith, J. W., Song, Y., Moore, E. G., Chen, Q., Tajkhorshid, E., Rienstra, C. M. & Moore, J. S., Oct 15 2019, In : ACS Macro Letters. 8, 10, p. 1365-1371 7 p.

Research output: Contribution to journalArticle

Amyloid beta-Peptides
Peptides
Polymers
Agglomeration
Ligands

MyoTrack: Realtime Estimation of Subject Participation in Robotic Rehabilitation Using sEMG and IMU

Pareek, S., Manjunath, H., Esfahani, E. T. & Kesavadas, T., Jan 1 2019, In : IEEE Access. 7, p. 76030-76041 12 p., 8735854.

Research output: Contribution to journalArticle

Open Access
Electromyography
Patient rehabilitation
Robotics
Trajectories
Robots

Neck Circumference and Its Association with Cardiometabolic Risk Factors in Pediatric Population

González-Cortés, C. A., Teran-Garcia, M. D. L., Luevano-Contreras, C., Portales-Pérez, D. P., Vargas-Morales, J. M., Cubillas-Tejeda, A. C., Cossío-Torres, P. E. & Aradillas-García, C., May 21 2019, In : Medicina. 55, 5, 183.

Research output: Contribution to journalArticle

Open Access
Body Mass Index
Neck
Pediatrics
Waist Circumference
Population

Neuromuscular actuation of biohybrid motile bots

Aydin, O., Zhang, X., Nuethong, S., Pagan-Diaz, G. J., Bashir, R., Gazzola, M. & Saif, M. T. A., Oct 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19841-19847 7 p.

Research output: Contribution to journalArticle

Open Access
Muscles
Motor Neurons
Locomotion
Optogenetics
Neural Stem Cells

Noise-Induced Hearing Loss in 3 Working Dogs

Schneider, D. C., Foss, K. D., De Risio, L., Hague, D. W., Mitek, A. E. & McMichael, M., Dec 2019, In : Topics in Companion Animal Medicine. 37, 100362.

Research output: Contribution to journalArticle

Noise-Induced Hearing Loss
hearing
Dogs
Brain Stem Auditory Evoked Potentials
dogs

Nonparametric variable selection and its application to additive models

Feng, Z., Lin, L., Zhu, R. & Zhu, L., Jan 1 2019, In : Annals of the Institute of Statistical Mathematics.

Research output: Contribution to journalArticle

Additive Models
Variable Selection
Nonparametric Model
Approximation
Two-stage Procedure

Nonribosomal Peptide Extension by a Peptide Amino-Acyl tRNA Ligase

Zhang, Z. & Van Der Donk, W. A., Jan 1 2019, (Accepted/In press) In : Journal of the American Chemical Society.

Research output: Contribution to journalArticle

Amino Acyl-tRNA Synthetases
peptide
Peptides
Amino acids
RNA, Transfer, Cys

Nontranslational function of leucyl-tRNA synthetase regulates myogenic differentiation and skeletal muscle regeneration

Son, K., You, J. S., Yoon, M. S., Dai, C., Kim, J. H., Khanna, N., Banerjee, A., Martinis, S. A., Han, G., Han, J. M., Kim, S. & Chen, J., May 1 2019, In : Journal of Clinical Investigation. 129, 5, p. 2088-2093 6 p.

Research output: Contribution to journalArticle

Open Access
Amino Acyl-tRNA Synthetases
Regeneration
Skeletal Muscle
Muscle Development
Transfer RNA Aminoacylation

Observation of Microheterogeneity in Highly Concentrated Nonaqueous Electrolyte Solutions

Robertson, L. A., Li, Z., Cao, Y., Shkrob, I. A., Tyagi, M., Smith, K. C., Zhang, L., Moore, J. S. & Z, Y., Jan 1 2019, In : Journal of the American Chemical Society.

Research output: Contribution to journalArticle

electrolyte
Electrolytes
Observation
Neutrons
Fluids

O-Methyltransferase-Mediated Incorporation of a β-Amino Acid in Lanthipeptides

Acedo, J. Z., Bothwell, I. R., An, L., Trouth, A., Frazier, C. & Van Der Donk, W. A., Jan 1 2019, In : Journal of the American Chemical Society. 141, 42, p. 16790-16801 12 p.

Research output: Contribution to journalArticle

Methyltransferases
Isoaspartic Acid
peptide
Peptides
Amino acids

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In : Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.

Research output: Contribution to journalArticle

Trigeminal Nuclei
Trigeminal Ganglion
Hyperalgesia
Nucleus Accumbens
Circadian Rhythm

Optical excitation and detection of neuronal activity

Hu, C., Sam, R., Shan, M., Nastasa, V., Wang, M., Kim, T., Gillette, M., Sengupta, P. & Popescu, G., Mar 2019, In : Journal of Biophotonics. 12, 3, e201800269.

Research output: Contribution to journalArticle

Optogenetics
Photoexcitation
stimulation
Electrophysiology
Imaging techniques

Optical measures of cerebral arterial stiffness are associated with white matter signal abnormalities and cognitive performance in normal aging

Tan, C. H., Low, K. A., Chiarelli, A. M., Fletcher, M. A., Navarra, R., Burzynska, A. Z., Kong, T. S., Zimmerman, B., Maclin, E. L., Sutton, B. P., Gratton, G. & Fabiani, M., Dec 2019, In : Neurobiology of Aging. 84, p. 200-207 8 p.

Research output: Contribution to journalArticle

Vascular Stiffness
Aptitude
Elasticity
Pulse
White Matter
hemangiosarcoma
Hemangiosarcoma
burden of disease
body cavities
Canidae

Oxygen-dependent regulation of SPI1 type three secretion system by small RNAs in Salmonella enterica serovar Typhimurium

Kim, K., Golubeva, Y. A., Vanderpool, C. & Slauch, J. M., Mar 2019, In : Molecular Microbiology. 111, 3, p. 570-587 18 p.

Research output: Contribution to journalArticle

Genomic Islands
Salmonella enterica
Salmonella
RNA
Oxygen

PACAP and other neuropeptide targets link chronic migraine and opioid-induced hyperalgesia in mouse models

Anapindi, K. D. B., Yang, N., Romanova, E. V., Rubakhin, S. S., Tipton, A., Dripps, I., Sheets, Z., Sweedler, J. V. & Pradhan, A. A., Jan 1 2019, In : Molecular and Cellular Proteomics. 18, 12, p. 2447-2458 12 p.

Research output: Contribution to journalArticle

Pituitary Adenylate Cyclase-Activating Polypeptide
Hyperalgesia
Neuropeptides
Migraine Disorders
Opioid Analgesics

Patient satisfaction with treatment outcomes after surgery and/or radiotherapy for spinal metastases

for the AOSpine Knowledge Forum Tumor, Dec 1 2019, In : Cancer. 125, 23, p. 4269-4277 9 p.

Research output: Contribution to journalArticle

Open Access
Patient Satisfaction
Radiotherapy
Neoplasm Metastasis
Quality of Life
Pain

Peculiar lifespan changes of periodic leg movements during sleep in restless legs syndrome

Ferri, R., DelRosso, L. M., Silvani, A., Cosentino, F. I. I., Picchietti, D. L., Mogavero, P., Manconi, M. & Bruni, O., Jan 1 2019, In : Journal of Sleep Research. e12896.

Research output: Contribution to journalArticle

Restless Legs Syndrome
Leg
Sleep
Periodicity
Polysomnography