Carle Illinois College of Medicine

Research Output 1975 2020

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2019

13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study

Jeon, S., Li, Q., Rubakhin, S., Sweedler, J. V., Smith, J. W., Neuringer, M., Kuchan, M. & Erdman, J. W., Jan 1 2019, In : Nutrition Research. 61, p. 102-108 7 p.

Research output: Contribution to journalArticle

Lutein
Macaca mulatta
Oral Administration
Tissue Distribution
Haplorhini
Health Status
Obesity
Hispanic Americans
Exercise
Needs Assessment

Activation of silent biosynthetic gene clusters using transcription factor decoys

Wang, B., Guo, F., Dong, S. H. & Zhao, H., Feb 1 2019, In : Nature chemical biology. 15, 2, p. 111-114 4 p.

Research output: Contribution to journalArticle

Multigene Family
Transcription Factors
Oxazoles
Peptide Synthases
Polyketide Synthases

Addressing myths about exercise in hemodialysis patients

Wilund, K., Jeong, J. H. & Greenwood, S. A., Jul 1 2019, In : Seminars in Dialysis. 32, 4, p. 297-302 6 p.

Research output: Contribution to journalArticle

Renal Dialysis
Exercise
Dialysis
Resistance Training
Research

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access
Bees
Chromosomes
Chromosome Mapping
Genome
Genomic Structural Variation

Allosteric Interactions in Human Cytochrome P450 CYP3A4: The Role of Phenylalanine 213

Denisov, I. G., Grinkova, Y. V., Nandigrami, P., Shekhar, M., Tajkhorshid, E. & Sligar, S., Mar 12 2019, In : Biochemistry. 58, 10, p. 1411-1422 12 p.

Research output: Contribution to journalArticle

Cytochrome P-450 CYP3A
Phenylalanine
Cytochrome P-450 Enzyme System
Progesterone
Carbamazepine

Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer

Woodburn, E. V., Long, K. D. & Cunningham, B. T., Jan 15 2019, In : IEEE Sensors Journal. 19, 2, p. 508-514 7 p., 8494768.

Research output: Contribution to journalArticle

Smartphones
Spectrometers
Assays
strip
Cameras

A new implementation for online calculation of manipulator Jacobian

Chembrammel, P. & Kesavadas, T., Feb 1 2019, In : PloS one. 14, 2, e0212018.

Research output: Contribution to journalArticle

Open Access
robots
Manipulators
Robots
Differentiation (calculus)
Derivatives
Multiresolution analysis
ground motion
wavelet
earthquakes
Earthquakes

An Exploratory Look at the Role of Childcare Providers as a Support and Resource for Breastfeeding Mothers

Lundquist, A., McBride, B. A., Donovan, S. M. & Kieffer, A., Jun 1 2019, In : Breastfeeding Medicine. 14, 5, p. 313-319 7 p.

Research output: Contribution to journalArticle

Breast Feeding
Mothers
Education
Foster Home Care
Mental Competency

Assessing the Flexibility of the Prochlorosin 2.8 Scaffold for Bioengineering Applications

Hegemann, J. D., Bobeica, S. C., Walker, M. C., Bothwell, I. R. & van der Donk, W. A., May 17 2019, In : ACS synthetic biology. 8, 5, p. 1204-1214 11 p.

Research output: Contribution to journalArticle

Bioengineering
Scaffolds
Peptides
Epitopes
Cyclization

Automated sensorless single-shot closed-loop adaptive optics microscopy with feedback from computational adaptive optics

Iyer, R. R., Liu, Y. Z. & Boppart, S. A., Apr 29 2019, In : Optics Express. 27, 9, p. 12998-13014 17 p.

Research output: Contribution to journalArticle

adaptive optics
shot
microscopy
deformable mirrors
aberration

Axial shielding of Pd(II) complexes enables perfect stereoretention in Suzuki-Miyaura cross-coupling of Csp 3 boronic acids

Lehmann, J. W., Crouch, I. T., Blair, D. J., Trobe, M., Wang, P., Li, J. & Burke, M., Dec 1 2019, In : Nature communications. 10, 1, 1263.

Research output: Contribution to journalArticle

Open Access
Boronic Acids
cross coupling
Shielding
shielding
acids

Bagging and deep learning in optimal individualized treatment rules

Mi, X., Zou, F. & Zhu, R., Jan 1 2019, In : Biometrics.

Research output: Contribution to journalArticle

Bagging
learning
Learning
Decision Rules
neural networks

Baseline correction of ground motions with physics-based correction patterns

Tian, S., Gardoni, P., Li, H. & Yuan, W., Jan 1 2019, In : Geophysical Journal International. 217, 1, p. 668-681 14 p.

Research output: Contribution to journalArticle

ground motion
Global positioning system
physics
Physics
strong motion

Behavioral response to fiber feedingis cohort-dependent and associated with gut microbiota composition in mice

Mailing, L. J., Allen, J. M., Pence, B. D., Rytych, J., Sun, Y., Bhattacharya, T. K., Park, P., Cross, T. W. L., McCusker, R. H., Swanson, K. S., Fahey, G. C., Rhodes, J. S., Kelley, K. W., Johnson, R. W. & Woods, J. A., Feb 1 2019, In : Behavioural Brain Research. 359, p. 731-736 6 p.

Research output: Contribution to journalArticle

Cellulose
Microbiota
Learning
Bilophila
Aptitude

Biochemical and structural investigation of sulfoacetaldehyde reductase from Klebsiella oxytoca

Zhou, Y., Wei, Y., Lin, L., Xu, T., Ang, E. L., Zhao, H., Yuchi, Z. & Zhang, Y., Jan 1 2019, In : Biochemical Journal. 476, 4, p. 733-746 14 p.

Research output: Contribution to journalArticle

Klebsiella oxytoca
Oxidoreductases
Taurine
NADP
Tail

Biohybrid valveless pump-bot powered by engineered skeletal muscle

Li, Z., Seo, Y., Aydin, O., Elhebeary, M., Kamm, R. D., Kong, H. J. & Taher Saif, M. A., Jan 29 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 5, p. 1543-1548 6 p.

Research output: Contribution to journalArticle

Hydrogel
Skeletal Muscle
Muscles
Microfluidics
Muscle Contraction

Blue light is a universal signal for Escherichia coli chemoreceptors

Perlova, T., Gruebele, M. H. W. & Chemla, Y. R., Jan 1 2019, In : Journal of bacteriology. 201, 11, e0076218.

Research output: Contribution to journalArticle

Escherichia coli
Light
Bacteria
Proton-Motive Force
Tars

Breaking tolerance with engineered class I antigen-presenting molecules

Parks, C. A., Henning, K. R., Pavelko, K. D., Hansen, M. J., Van Keulen, V. P., Reed, B. K., Stone, J. D., Schrum, A. G., Gil, D., Kranz, D. M., Bordner, A. J., Barry, M. A. & Pease, L. R., Feb 19 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 8, p. 3136-3145 10 p.

Research output: Contribution to journalArticle

Histocompatibility Antigens Class I
Peptides
T-Lymphocytes
Autoantigens
Isoantigens

Bulk-state and single-particle imaging are central to understanding carbon dot photo-physics and elucidating the effects of precursor composition and reaction temperature

Fathi, P., Khamo, J. S., Huang, X., Srivastava, I., Esch, M. B., Zhang, K. & Pan, D., Apr 1 2019, In : Carbon. 145, p. 572-585 14 p.

Research output: Contribution to journalArticle

Carbon
Physics
Imaging techniques
Chemical analysis
Temperature

Characterization of Cas proteins for CRISPR-Cas editing in streptomycetes

Yeo, W. L., Heng, E., Tan, L. L., Lim, Y. W., Lim, Y. H., Hoon, S., Zhao, H., Zhang, M. M. & Wong, F. T., Jan 1 2019, In : Biotechnology and bioengineering.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
CRISPR-Cas Systems
Genes
Streptococcus thermophilus
Francisella tularensis
Microspheres
Nanoparticles
Imaging techniques
nanoparticles
magnetic resonance

Characterization of the flavin monooxygenase involved in biosynthesis of the antimalarial FR-900098

Nguyen, K., DeSieno, M. A., Bae, B., Johannes, T. W., Cobb, R. E., Zhao, H. & Nair, S. K., Jan 1 2019, In : Organic and Biomolecular Chemistry. 17, 6, p. 1506-1518 13 p.

Research output: Contribution to journalArticle

dimethylaniline monooxygenase (N-oxide forming)
Flavin-Adenine Dinucleotide
biosynthesis
Biosynthesis
Antimalarials

Characterizing Fatty Liver in vivo in Rabbits, Using Quantitative Ultrasound

Nguyen, T. N., Podkowa, A. S., Tam, A. Y., Arnold, E. C., Miller, R. J., Park, T. H., Do, M. N. & Oelze, M. L., Aug 1 2019, In : Ultrasound in Medicine and Biology. 45, 8, p. 2049-2062 14 p.

Research output: Contribution to journalArticle

rabbits
Fatty Liver
liver
Rabbits
fats

Chemoselective methylene oxidation in aromatic molecules

Zhao, J., Nanjo, T., de Lucca, E. C. & White, M. C., Mar 1 2019, In : Nature Chemistry. 11, 3, p. 213-221 9 p.

Research output: Contribution to journalArticle

Oxidation
Molecules
Scaffolds
Catalysts
Ethinyl Estradiol

Chronic Exposure of Mice to Bisphenol-A Alters Uterine Fibroblast Growth Factor Signaling and Leads to Aberrant Epithelial Proliferation

Neff, A. M., Blanco, S. C., Flaws, J. A., Bagchi, I. C. & Bagchi, M. K., May 1 2019, In : Endocrinology. 160, 5, p. 1234-1246 13 p.

Research output: Contribution to journalArticle

Open Access
Fibroblast Growth Factors
Uterus
Endometrial Hyperplasia
Neural Crest
Steroids

Cilostamide affects in a concentration and exposure time-dependent manner the viability and the kinetics of in vitro maturation of caprine and bovine oocytes

Correia, H. H. V., Vieira, L. A., Mielgo, C. M., Paes, V. M., Alves, B. G., Silva, J. R. V., Wheeler, M. B., Rodrigues, A. P. R. & Figueiredo, J. R., Feb 1 2019, In : Research in Veterinary Science. 122, p. 22-28 7 p.

Research output: Contribution to journalArticle

Oocytes
exposure duration
oocytes
goats
viability

Circadian rhythm of redox state regulates membrane excitability in hippocampal CA1 neurons

Naseri Kouzehgarani, G., Bothwell, M. Y. & Gillette, M. L., Jan 1 2019, (Accepted/In press) In : European Journal of Neuroscience.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Circadian Rhythm
Oxidation-Reduction
Neurons
Membranes

Cognitive and neural architecture of decision making competence

Román, F. J., Colom, R., Hillman, C. H., Kramer, A. F., Cohen, N. J. & Barbey, A. K., Oct 1 2019, In : NeuroImage. 199, p. 172-183 12 p.

Research output: Contribution to journalArticle

Mental Competency
Decision Making
Intelligence
Individuality
Vocabulary

Comparative analysis of brain and fat body gene splicing patterns in the honey bee, Apis mellifera

Kannan, K., Shook, M., Li, Y., Robinson, G. E. & Ma, J., Jan 1 2019, In : G3: Genes, Genomes, Genetics. 9, 4, p. 1055-1063 9 p.

Research output: Contribution to journalArticle

Open Access
Fat Body
Honey
Bees
Alternative Splicing
Brain

Contextualizing numeric clinical test results for gist comprehension: Implications for EHR patient portals

Morrow, D. G., Azevedo, R. F. L., Garcia-Retamero, R., Hasegawa-Johnson, M. A., Huang, T. S., Schuh, W., Gu, K. & Zhang, Y., Mar 1 2019, In : Journal of Experimental Psychology: Applied. 25, 1, p. 41-61 21 p.

Research output: Contribution to journalArticle

Electronic Health Records
Self Care
Cholesterol
Patient Portals

Coseismic deformation of the 6 February 2018 M w 6.2 Hualien earthquake based on strong-motion recordings

Tian, S., Gardoni, P. & Yuan, W., Feb 1 2019, In : Seismological Research Letters. 90, 1, p. 108-117 10 p.

Research output: Contribution to journalArticle

strong motion
earthquakes
recording
earthquake
stations

Counting growth factors in single cells with infrared quantum dots to measure discrete stimulation distributions

Le, P., Lim, S. J., Baculis, B. C., Chung, H. J., Kilian, K. A. & Smith, A. M., Dec 1 2019, In : Nature communications. 10, 1, 909.

Research output: Contribution to journalArticle

Open Access
Quantum Dots
stimulation
Semiconductor quantum dots
Intercellular Signaling Peptides and Proteins
counting

Counting process-based dimension reduction methods for censored outcomes

Sun, Q., Zhu, R., Wang, T. & Zeng, D., Mar 1 2019, In : Biometrika. 106, 1, p. 181-186 6 p.

Research output: Contribution to journalArticle

Dimension-reduction Subspaces
Counting Process
Dimension Reduction
Reduction Method
Censored Survival Data

CylA is a sequence-specific protease involved in toxin biosynthesis

Tang, W., Bobeica, S. C., Wang, L. & van der Donk, W. A., Mar 29 2019, In : Journal of Industrial Microbiology and Biotechnology. 46, 3-4, p. 537-549 13 p.

Research output: Contribution to journalArticle

Perforin
Biosynthesis
Peptide Hydrolases
Peptides
Subtilisin

Cytometric fingerprinting and machine learning (CFML): A novel label-free, objective method for routine mastitis screening

Dhoble, A. S., Ryan, K. T., Lahiri, P., Chen, M., Pang, X., Cardoso, F. & Bhalerao, K., Jul 1 2019, In : Computers and Electronics in Agriculture. 162, p. 505-513 9 p.

Research output: Contribution to journalArticle

artificial intelligence
milk
mastitis
Learning systems
Labels

Data-driven elasticity imaging using cartesian neural network constitutive models and the autoprogressive method

Hoerig, C., Ghaboussi, J. & Insana, M., May 1 2019, In : IEEE Transactions on Medical Imaging. 38, 5, p. 1150-1160 11 p., 8522049.

Research output: Contribution to journalArticle

Neural Networks (Computer)
Elasticity
Constitutive models
Neural networks
Imaging techniques

Designing multifunctional woody polycultures according to landowner preferences in Central Illinois

Stanek, E. C., Lovell, S. T. & Reisner, A. E., Jan 1 2019, (Accepted/In press) In : Agroforestry Systems.

Research output: Contribution to journalArticle

polyculture
landowners
landowner
nut
crop

Design of anapole mode electromagnetic field enhancement structures for biosensing applications

Sabri, L., Huang, Q., Liu, J. N. & Cunningham, B. T., Jan 1 2019, In : Optics Express. 27, 5, p. 7196-7212 17 p.

Research output: Contribution to journalArticle

electromagnetic fields
electromagnetism
electromagnetic coupling
augmentation
finite difference time domain method

Development of a perceived exertion scale for dogs using selected physiologic parameters

Swanson, K. D. J., Harper, T. A. M., McMichael, M., Fries, R. C., Lascola, K. M., Chandler, C., Schaeffer, D. J. & Chinnadurai, S. K., Apr 1 2019, In : Journal of Small Animal Practice. 60, 4, p. 247-253 7 p.

Research output: Contribution to journalArticle

Observer Variation
Dogs
dogs
exercise
exercise equipment

Dietary fiber is independently related to blood triglycerides among adults with overweight and obesity

Hannon, B. A., Thompson, S. V., Edwards, C. G., Skinner, S. K., Niemiro, G. M., Burd, N. A., Holscher, H. D., Teran-Garcia, M. D. L. & Khan, N. A., Feb 1 2019, In : Current Developments in Nutrition. 3, 2, nzy094.

Research output: Contribution to journalArticle

metabolic syndrome
Dietary Fiber
Triglycerides
obesity
dietary fiber

Digital staining through the application of deep neural networks to multi-modal multi-photon microscopy

Borhani, N., Bower, A. J., Boppart, S. A. & Psaltis, D., Mar 1 2019, In : Biomedical Optics Express. 10, 3, p. 1339-1350 12 p., 355205.

Research output: Contribution to journalArticle

staining
Photons
Microscopy
Staining and Labeling
microscopy

Directional search algorithm for hierarchical model development and selection

Sun, B. & Gardoni, P., Feb 1 2019, In : Reliability Engineering and System Safety. 182, p. 194-207 14 p.

Research output: Contribution to journalArticle

Cable stayed bridges
Carbonation
Bridge decks
Uncertainty
Concretes

Diverse compounds from pleuromutilin lead to a thioredoxin inhibitor and inducer of ferroptosis

Llabani, E., Hicklin, R. W., Lee, H. Y., Motika, S. E., Crawford, L. A., Weerapana, E. & Hergenrother, P., Jun 1 2019, In : Nature Chemistry. 11, 6, p. 521-532 12 p.

Research output: Contribution to journalArticle

Thioredoxins
Biological Products
Screening
Clustered Regularly Interspaced Short Palindromic Repeats
Molecules

Dodine as a Kosmo-Chaotropic Agent

Guin, D., Mittal, S., Bozymski, B., Shukla, D. & Gruebele, M. H. W., May 16 2019, In : Journal of Physical Chemistry Letters. 10, 10, p. 2600-2605 6 p.

Research output: Contribution to journalArticle

proteins
Proteins
helices
Spectroscopy
Janus
credit policy
credit
China
panel data
bank

Does Interest in Smoking Affect Youth Selection of Pro-smoking Videos? A selective exposure experiment

Bae, R. E., Maloney, E. K., Albarracin, D. & Cappella, J. N., Jan 1 2019, In : Nicotine and Tobacco Research. 21, 4, p. 539-546 8 p.

Research output: Contribution to journalArticle

Smoking

Double Q-Learning for Radiation Source Detection

Liu, Z. & Abbaszadeh, S., 2019, In : Sensors. 19, 4, 19 p.

Research output: Contribution to journalArticle

Open Access
radiation sources
learning
Learning
Radiation
radiation

Effects of aerobic fitness on cognitive performance as a function of dual-task demands in older adults

Chaparro, G. N., Stine-Morrow, E. A. L. & Hernandez, M. E., Apr 1 2019, In : Experimental Gerontology. 118, p. 99-105 7 p.

Research output: Contribution to journalArticle

Color
Walking
Stroop Test
Exercise equipment
Cognition