Research Output 1975 2020

2019

Predicting fatality rates due to earthquakes accounting for community vulnerability

Wang, Y., Gardoni, P., Murphy, C. & Guerrier, S., May 2019, In : Earthquake Spectra. 35, 2, p. 513-536 24 p.

Research output: Contribution to journalArticle

vulnerability
Earthquakes
earthquakes
earthquake
Taiwan

Predicting Short-term MCI-to-AD Progression Using Imaging, CSF, Genetic Factors, Cognitive Resilience, and Demographics

For the Alzheimer’s Disease Neuroimaging Initiative & Iyer, R. K., Dec 1 2019, In : Scientific reports. 9, 1, 2235.

Research output: Contribution to journalArticle

Open Access
Disease Progression
Alzheimer Disease
Demography
Complement C1
Prodromal Symptoms

Prediction and optimization of mechanical properties of composites using convolutional neural networks

Abueidda, D. W., Almasri, M., Ammourah, R., Ravaioli, U., Jasiuk, I. M. & Sobh, N. A., Nov 1 2019, In : Composite Structures. 227, 111264.

Research output: Contribution to journalArticle

Genetic algorithms
Neural networks
Mechanical properties
Composite materials
Toughness

Preface

Donovan, S. M., German, J. B., Lönnerdal, B. & Lucas, A., Jan 1 2019, In : Nestle Nutrition Institute Workshop Series. 90, p. VII-IX

Research output: Contribution to journalReview article

Open Access

Preferential binding of cytochrome c to anionic ligand-coated gold nanoparticles: A complementary computational and experimental approach

Tollefson, E. J., Allen, C. R., Chong, G., Zhang, X., Rozanov, N. D., Bautista, A., Cerda, J. J., Pedersen, J. A., Murphy, C. J., Carlson, E. E. & Hernandez, R., Jun 25 2019, In : ACS Nano. 13, 6, p. 6856-6866 11 p.

Research output: Contribution to journalArticle

cytochromes
Cytochromes c
Gold
Ligands
gold

Preliminary evaluation of a self-guided fall risk assessment tool for older adults

Sun, R., Aldunate, R. G., Paramathayalan, V. R., Ratnam, R., Jain, S., Morrow, D. G. & Sosnoff, J. J., May 1 2019, In : Archives of Gerontology and Geriatrics. 82, p. 94-99 6 p.

Research output: Contribution to journalArticle

risk assessment
evaluation
psychological consequences
Self Report
PC

Prenatal and ancestral exposure to di(2-ethylhexyl) phthalate alters gene expression and DNA methylation in mouse ovaries

Rattan, S., Beers, H. K., Kannan, A., Ramakrishnan, A., Brehm, E., Bagchi, I. C., Irudayaraj, J. M. K. & Flaws, J. A., Sep 15 2019, In : Toxicology and Applied Pharmacology. 379, 114629.

Research output: Contribution to journalArticle

DNA Methylation
Gene expression
Ovary
Gene Expression
Cytosine

Probabilistic Analysis of Building Fire Severity Based on Fire Load Density Models

Xie, Q., Xiao, J., Gardoni, P. & Hu, K., Jul 1 2019, In : Fire Technology. 55, 4, p. 1349-1375 27 p.

Research output: Contribution to journalArticle

Fires
Loads (forces)
Office buildings
Enclosures
Temperature

Probabilistic models for the erosion rate in embankments and reliability analysis of earth dams

Andreini, M., Gardoni, P., Pagliara, S. & Sassu, M., Jan 2019, In : Reliability Engineering and System Safety. 181, p. 142-155 14 p.

Research output: Contribution to journalArticle

Embankment dams
Embankments
Reliability analysis
Erosion
Pipe

Probabilistic Models to Assess the Seismic Safety of Rigid Block-Like Elements and the Effectiveness of Two Safety Devices

Contento, A., Gardoni, P., Di Egidio, A. & De Leo, A., Nov 1 2019, In : Journal of Structural Engineering (United States). 145, 11, 04019133.

Research output: Contribution to journalArticle

Safety devices
Pendulums
Statistical Models
Seismic response
Nonlinear equations

Probabilistic prediction of intact rock strength using point load tests using a Bayesian formulation

Guevara-Lopez, F., Jimenez, R., Gardoni, P. & Asem, P., Jan 1 2019, In : Georisk.

Research output: Contribution to journalArticle

Compressive strength
Rocks
compressive strength
prediction
Metamorphic rocks

Procaspase-3 Overexpression in Cancer: A Paradoxical Observation with Therapeutic Potential

Boudreau, M. W., Peh, J. & Hergenrother, P. J., Nov 15 2019, In : ACS chemical biology. 14, 11, p. 2335-2348 14 p.

Research output: Contribution to journalReview article

Caspase 3
Observation
Neoplasms
Therapeutics
Apoptosis Regulatory Proteins

Processing-dependent mechanical properties of solvent cast cyclic polyphthalaldehyde

Lopez Hernandez, H., Takekuma, S. K., Mejia, E. B., Plantz, C. L., Sottos, N. R., Moore, J. S. & White, S. R., Jan 24 2019, In : Polymer. 162, p. 29-34 6 p.

Research output: Contribution to journalArticle

Mechanical properties
Processing
Depolymerization
Boiling point
Tensile testing

Production of galactitol from galactose by the oleaginous yeast Rhodosporidium toruloides IFO0880

Jagtap, S. S., Bedekar, A. A., Liu, J. J., Jin, Y. S. & Rao, C. V., Oct 18 2019, In : Biotechnology for Biofuels. 12, 1, 250.

Research output: Contribution to journalArticle

Open Access
Galactitol
Galactose
Yeast
yeast
sugar

Promoting societal well-being by designing sustainable and resilient infrastructure: Engineering tools and broader interdisciplinary considerations

Gardoni, P., Jan 1 2019, Life-Cycle Analysis and Assessment in Civil Engineering: Towards an Integrated Vision - Proceedings of the 6th International Symposium on Life-Cycle Civil Engineering, IALCCE 2018. Frangopol, D. M., Caspeele, R. & Taerwe, L. (eds.). CRC Press/Balkema, p. 25-30 6 p. (Life-Cycle Analysis and Assessment in Civil Engineering: Towards an Integrated Vision - Proceedings of the 6th International Symposium on Life-Cycle Civil Engineering, IALCCE 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hazards
Tornadoes
Economics
Tsunamis
Hurricanes

Pro-Nifuroxazide Self-Assembly Leads to Triggerable Nanomedicine for Anti-cancer Therapy

Misra, S. K., Wu, Z., Ostadhossein, F., Ye, M., Boateng, K., Schulten, K., Tajkhorshid, E. & Pan, D., May 22 2019, In : ACS Applied Materials and Interfaces. 11, 20, p. 18074-18089 16 p.

Research output: Contribution to journalArticle

Medical nanotechnology
Self assembly
Nanoparticles
Prodrugs
Phosphorylation

Proteins: "boil 'Em, Mash 'Em, Stick 'Em in a Stew"

Boob, M., Wang, Y. & Gruebele, M., Oct 10 2019, In : Journal of Physical Chemistry B. 123, 40, p. 8341-8350 10 p.

Research output: Contribution to journalArticle

proteins
Proteins
cells
crowding
folding

Provocative questions in osteosarcoma basic and translational biology: A report from the Children's Oncology Group

Roberts, R. D., Lizardo, M. M., Reed, D. R., Hingorani, P., Glover, J., Allen-Rhoades, W., Fan, T., Khanna, C., Sweet-Cordero, E. A., Cash, T., Bishop, M. W., Hegde, M., Sertil, A. R., Koelsche, C., Mirabello, L., Malkin, D., Sorensen, P. H., Meltzer, P. S., Janeway, K. A., Gorlick, R. & 1 others, Crompton, B. D., Oct 15 2019, In : Cancer. 125, 20, p. 3514-3525 12 p.

Research output: Contribution to journalReview article

Osteosarcoma
Poisons
Research
Epigenomics
Lung Diseases

Publisher Correction: Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis (Scientific Reports, (2017), 7, 1, (10800), 10.1038/s41598-017-09766-1)

Taneja, I., Reddy, B., Damhorst, G., Zhao, S. D., Hassan, U., Price, Z., Jensen, T., Ghonge, T., Patel, M., Wachspress, S., Winter, J., Rappleye, M., Smith, G., Healey, R., Ajmal, M., Khan, M., Patel, J., Rawal, H., Sarwar, R., Soni, S. & 6 others, Anwaruddin, S., Davis, B., Kumar, J., White, K., Bashir, R. & Zhu, R., Dec 1 2019, In : Scientific reports. 9, 1, 17419.

Research output: Contribution to journalComment/debate

Open Access
Sepsis
Biomarkers

Pumpless microfluidic devices for generating healthy and diseased endothelia

Yang, Y., Fathi, P., Holland, G., Pan, D., Wang, N. S. & Esch, M. B., Jan 1 2019, In : Lab on a chip. 19, 19, p. 3212-3219 8 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Cell culture
Microfluidics
Endothelium
Endothelial cells

Pushing the Limits of Electron and Photon Interactions with Matter [Guest Editorial]

Bayram, C., Aug 2019, In : IEEE Nanotechnology Magazine. 13, 4, 1 p., 8765642.

Research output: Contribution to journalEditorial

Photons
Electrons

Quantifying Error Correction through a Rule-Based Model of Strand Escape from an [n]-Rung Ladder

Cencer, M. M., Greenlee, A. J. & Moore, J. S., Jan 1 2019, (Accepted/In press) In : Journal of the American Chemical Society.

Research output: Contribution to journalArticle

error correction
Ladders
Error correction
Seed
Kinetics

Quantifying protein dynamics and stability in a living organism

Feng, R., Gruebele, M. & Davis, C. M., Dec 1 2019, In : Nature communications. 10, 1, 1179.

Research output: Contribution to journalArticle

Open Access
Protein Stability
organisms
Fluorescence
Cytology
proteins

Quantitative Imaging of Organic Ligand Density on Anisotropic Inorganic Nanocrystals

Janicek, B. E., Hinman, J. G., Hinman, J. J., Bae, S. H., Wu, M., Turner, J., Chang, H. H., Park, E., Lawless, R., Suslick, K. S., Murphy, C. J. & Huang, P. Y., Sep 11 2019, In : Nano letters. 19, 9, p. 6308-6314 7 p.

Research output: Contribution to journalArticle

Nanocrystals
nanocrystals
Ligands
Nanoparticles
Imaging techniques

Racial Microaggressions and Sense of Belonging at a Historically White University

Lewis, J. A., Mendenhall, R., Ojiemwen, A., Thomas, M., Riopelle, C., Harwood, S. A. & Browne Huntt, M., Jan 1 2019, In : American Behavioral Scientist.

Research output: Contribution to journalArticle

Students
student
Asian Americans
African Americans
Color

Radical-mediated C-S bond cleavage in C2 sulfonate degradation by anaerobic bacteria

Xing, M., Wei, Y., Zhou, Y., Zhang, J., Lin, L., Hu, Y., Hua, G., N. Nanjaraj Urs, A., Liu, D., Wang, F., Guo, C., Tong, Y., Li, M., Liu, Y., Ang, E. L., Zhao, H., Yuchi, Z. & Zhang, Y., Dec 1 2019, In : Nature communications. 10, 1, 1609.

Research output: Contribution to journalArticle

Open Access
Anaerobic Bacteria
sulfonates
bacteria
cleavage
Bacteria

Radiographic and CT Evaluation of Recombinant Human Bone Morphogenetic Protein-2-assisted Cervical Spinal Interbody Fusion

Weisbrod, L. J., Arnold, P. M. & Leever, J. D., Mar 1 2019, In : Clinical spine surgery. 32, 2, p. 71-79 9 p.

Research output: Contribution to journalArticle

Spinal Fusion
Diskectomy
Autografts
recombinant human bone morphogenetic protein-2
Osteogenesis

Rapid conjugation of nanoparticles, proteins and siRNAs to microbubbles by strain-promoted click chemistry for ultrasound imaging and drug delivery

Liu, X., Gong, P., Song, P., Xie, F., Miller, A. L., Chen, S. & Lu, L., Feb 14 2019, In : Polymer Chemistry. 10, 6, p. 705-717 13 p.

Research output: Contribution to journalArticle

Click Chemistry
Microbubbles
Alkynes
Azides
Cycloaddition

Rat bone properties and their relationship to gait during growth

Song, H., Polk, J. D. & Kersh, M. E., Jan 1 2019, In : Journal of Experimental Biology. 222, 18, jeb203554.

Research output: Contribution to journalArticle

Open Access
gait
Gait
bone
bones
tibia

Reactive oxygen species-responsive drug delivery systems for the treatment of neurodegenerative diseases

Ballance, W. C., Qin, E. C., Chung, H. J., Gillette, M. L. & Kong, H. J., Oct 2019, In : Biomaterials. 217, 119292.

Research output: Contribution to journalReview article

Neurodegenerative diseases
Drug Delivery Systems
Neurodegenerative Diseases
Reactive Oxygen Species
Oxygen

Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology

You, S., Sun, Y., Yang, L., Park, J., Tu, H., Marjanovic, M., Sinha, S. & Boppart, S. A., Dec 17 2019, In : npj Precision Oncology. 3, 1, 33.

Research output: Contribution to journalArticle

Open Access
Histology
Area Under Curve
Neoplasms
Learning
Technology

Recent Advances in Micro, Nano, and Cell Mechanics

Zhu, Y., Saif, T. & DelRio, F. W., Jan 1 2019, In : Experimental Mechanics.

Research output: Contribution to journalEditorial

Open Access
Mechanics

Recommendations for performance optimizations when using GATK3.8 and GATK4

Heldenbrand, J. R., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Hudson, M. E., Iyer, R. K., Kalmbach, M. T., Kendig, K. I., Klee, E. W., Mattson, N. R., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Nov 8 2019, In : BMC bioinformatics. 20, 1, 557.

Research output: Contribution to journalArticle

Open Access
Performance Optimization
Recommendations
Genes
Cost effectiveness
Electric sparks

Reconfiguration of brain networks supporting inhibition of emotional challenge

Bartholomew, M. E., Yee, C. M., Heller, W., Miller, G. A. & Spielberg, J. M., Feb 1 2019, In : NeuroImage. 186, p. 350-357 8 p.

Research output: Contribution to journalArticle

Emotions
Brain
Prefrontal Cortex
Aptitude
Arousal

Recovery optimization of interdependent infrastructure: A multi-scale approach

Sharma, N., Tabandeh, A. & Gardoni, P., Jan 1 2019.

Research output: Contribution to conferencePaper

Recovery
Infrastructure
Optimization
Resilience
Disaster

Reference free quantitative ultrasound classification of fatty liver

Nguyen, T. & Oelze, M., Oct 2019, 2019 IEEE International Ultrasonics Symposium, IUS 2019. IEEE Computer Society, p. 2424-2427 4 p. 8925666. (IEEE International Ultrasonics Symposium, IUS; vol. 2019-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

liver
rabbits
lipids
fats
attenuation

REINAM: Reinforcement learning for input-grammar inference

Wu, Z., Johnson, E., Yang, W., Bastani, O., Song, D., Peng, J. & Xie, T., Aug 12 2019, ESEC/FSE 2019 - Proceedings of the 2019 27th ACM Joint Meeting European Software Engineering Conference and Symposium on the Foundations of Software Engineering. Apel, S., Dumas, M., Russo, A. & Pfahl, D. (eds.). Association for Computing Machinery, Inc, p. 488-498 11 p. (ESEC/FSE 2019 - Proceedings of the 2019 27th ACM Joint Meeting European Software Engineering Conference and Symposium on the Foundations of Software Engineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Reinforcement learning
Seed
Software engineering
Engines
Testing

Relations between mode of birth delivery and timing of developmental milestones and adiposity in preadolescence: A retrospective study

Chojnacki, M. R., Holscher, H. D., Balbinot, A. R., Raine, L. B., Biggan, J. R., Walk, A. M., Kramer, A. F., Cohen, N. J., Hillman, C. H. & Khan, N. A., Feb 2019, In : Early Human Development. 129, p. 52-59 8 p.

Research output: Contribution to journalArticle

Adiposity
Retrospective Studies
Parturition
Toilet Training
Emergencies

Relaying of the local enhanced electric-field using stacked gold bowtie nanoantennas

Ding, Q. & Toussaint, K. C., Jun 18 2019, In : Nanotechnology. 30, 36, 365202.

Research output: Contribution to journalArticle

Gold
Electric fields
Nonlinear optics
Metamaterials
Antenna feeders
stormwater
infrastructure
garden
clay loam
monitoring

Repetitive Negative Thought and Executive Dysfunction: An Interactive Pathway to Emotional Distress

Madian, N., Bredemeier, K., Heller, W., Miller, G. A. & Warren, S. L., Apr 1 2019, In : Cognitive Therapy and Research. 43, 2, p. 464-480 17 p.

Research output: Contribution to journalArticle

Executive Function
Depression
Anxiety
Anxiety Disorders
Cognition

Reproducibility and Replicability

Sweedler, J. V., Jul 2 2019, In : Analytical chemistry. 91, 13, p. 7971-7972 2 p.

Research output: Contribution to journalEditorial

Response to Letter to the Editor "Is aspirin an effective preventive medicine for firefighting induced acute inflammation?"

Smith, D. L., Fernhall, B., Horn, G. P. & Woods, J. A., Jan 1 2019, (Accepted/In press) In : Journal of occupational and environmental medicine.

Research output: Contribution to journalLetter

Preventive Medicine
Aspirin
Inflammation

Results from the randomized controlled IHOPE trial suggest no effects of oral protein supplementation and exercise training on physical function in hemodialysis patients

Jeong, J. H., Biruete, A., Tomayko, E. J., Wu, P. T., Fitschen, P., Chung, H. R., Ali, M., McAuley, E., Fernhall, B., Phillips, S. A. & Wilund, K. R., Sep 2019, In : Kidney International. 96, 3, p. 777-786 10 p.

Research output: Contribution to journalArticle

Renal Dialysis
Randomized Controlled Trials
Exercise
Quality of Life
Proteins

Reversible Bonding of Aromatic Thermosetting Copolyesters for In-Space Assembly

Meyer, J. L., Bakir, M., Lan, P., Economy, J., Jasiuk, I. M., Bonhomme, G. & Polycarpou, A. A., Apr 2019, In : Macromolecular Materials and Engineering. 304, 4, 1800647.

Research output: Contribution to journalArticle

Debonding
Adhesives
Coatings
Transesterification
Substrates

Review of policies to increase fruit and vegetable consumption and physical activity in 49 low- and middle-income countries

Darfour-Oduro, S. A., Andrade, J. & Grigsby, D. S., Mar 1 2019, In : Journal of Public Health. 41, 1

Research output: Contribution to journalArticle

Vegetables
Fruit
Mass Media
Policy Making
PubMed

Reward anticipation and punishment anticipation are instantiated in the brain via opponent mechanisms

Lake, J. I., Spielberg, J. M., Infantolino, Z. P., Crocker, L. D., Yee, C. M., Heller, W. & Miller, G. A., Aug 2019, In : Psychophysiology. 56, 8, e13381.

Research output: Contribution to journalArticle

Punishment
Reward
Brain
Motivation
Cues

Robust single-cell Hi-C clustering by convolution- And random-walk–based imputation

Zhou, J., Ma, J., Chen, Y., Cheng, C., Bao, B., Peng, J., Sejnowski, T. J., Dixon, J. R. & Ecker, J. R., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 28, p. 14011-14018 8 p.

Research output: Contribution to journalArticle

Open Access
Cluster Analysis
Genome
Single-Cell Analysis
Chromosome Structures
Benchmarking
Salts
Sodium
Safety
Growth
Swine

Salami Publications and Duplicate Submissions: Put Them on Your List of Things to Avoid

Sweedler, J. V., Mar 5 2019, In : Analytical chemistry. 91, 5, p. 3177-3178 2 p.

Research output: Contribution to journalEditorial