Research Output 1969 2020

2019

Moving forward with the primate microbiome: Introduction to a special issue of the American Journal of Primatology

Amato, K. R. & Stumpf, R. M., Oct 1 2019, In : American journal of primatology. 81, 10-11, e23060.

Research output: Contribution to journalEditorial

primate
Primates
ecology
microbiology
standardization

Msx Homeobox Genes Act Downstream of BMP2 to Regulate Endometrial Decidualization in Mice and in Humans

Nallasamy, S., Kaya Okur, H. S., Bhurke, A., Davila, J., Li, Q., Young, S. L., Taylor, R. N., Bagchi, M. K. & Bagchi, I. C., Jan 1 2019, In : Endocrinology. 160, 7, p. 1631-1644 14 p.

Research output: Contribution to journalArticle

Bone Morphogenetic Protein 2
Homeobox Genes
Stromal Cells
Uterus
Gene Expression Profiling

Multi-Attribute Topic Feature Construction for Social Media-based Prediction

Morales, A., Gandhi, N., Chan, M. P. S., Lohmann, S., Sanchez, T., Brady, K. A., Ungar, L., Albarracin, D. & Zhai, C., Jan 22 2019, Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018. Song, Y., Liu, B., Lee, K., Abe, N., Pu, C., Qiao, M., Ahmed, N., Kossmann, D., Saltz, J., Tang, J., He, J., Liu, H. & Hu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1073-1078 6 p. 8622347. (Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Metadata
Viruses
Semantics

Multi-cellular engineered living systems: Building a community around responsible research on emergence

Sample, M., Boulicault, M., Allen, C., Bashir, R., Hyun, I., Levis, M., Lowenthal, C., Mertz, D., Montserrat, N., Palmer, M. J., Saha, K. & Zartman, J., Jul 10 2019, In : Biofabrication. 11, 4, 043001.

Research output: Contribution to journalReview article

Open Access
Research
Seizing
Organoids
Technology
Civil Rights

Multicolor Mechanochromism of a Polymer/Silica Composite with Dual Distinct Mechanophores

Kosuge, T., Zhu, X., Lau, V. M., Aoki, D., Martinez, T. J., Moore, J. S. & Otsuka, H., Feb 6 2019, In : Journal of the American Chemical Society. 141, 5, p. 1898-1902 5 p.

Research output: Contribution to journalArticle

Silicon Dioxide
Polymers
polymer
Color
silica

Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol

Park, H. M., Satta, R., Davis, R. G., Goo, Y. A., Leduc, R. D., Fellers, R. T., Greer, J. B., Romanova, E. V., Rubakhin, S. S., Tai, R., Thomas, P. M., Sweedler, J. V., Kelleher, N. L., Patrie, S. M. & Lasek, A. W., Nov 1 2019, In : Journal of Proteome Research. 18, 11, p. 3999-4012 14 p.

Research output: Contribution to journalArticle

Cocaine
Proteomics
Estradiol
Brain
Estrogens

Multi-functional genome-wide CRISPR system for high throughput genotype–phenotype mapping

Lian, J., Schultz, C., Cao, M., HamediRad, M. & Zhao, H., Dec 1 2019, In : Nature communications. 10, 1, 5794.

Research output: Contribution to journalArticle

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
genome
Genes
Throughput
Genome

Multimodality imaging and percutaneous closure of right sinus of valsalva to right ventricular outflow tract fistula after transcatheter aortic valve replacement

Mehta, S. S., Adoni, N., Shihabi, A., Bodine, C., Moussa, I. & Gibb, M., Jan 1 2019, In : Journal of Invasive Cardiology. 31, 7, p. E227-E228

Research output: Contribution to journalComment/debate

Sinus of Valsalva
Fistula
Transcatheter Aortic Valve Replacement

Multiple cancer-specific antigens are targeted by a chimeric antigen receptor on a single cancer cell

He, Y., Schreiber, K., Wolf, S. P., Wen, F., Steentoft, C., Zerweck, J., Steiner, M., Sharma, P., Michael Shepard, H., Posey, A., June, C. H., Mandel, U., Clausen, H., Leisegang, M., Meredith, S. C., Kranz, D. M. & Schreiber, H., Oct 17 2019, In : JCI Insight. 4, 21, e130416.

Research output: Contribution to journalArticle

Open Access
Antigen Receptors
Antigens
Neoplasms
T-Cell Antigen Receptor Specificity
Tumor Escape

Multiplexed and tunable transcriptional activation by promoter insertion using nuclease-assisted vector integration

Brown, A., Winter, J., Gapinske, M., Tague, N., Woods, W. S. & Perez-Pinera, P., Jul 9 2019, In : Nucleic acids research. 47, 12, p. e67

Research output: Contribution to journalArticle

Open Access
Transcriptional Activation
Cell Engineering
Genes
Organism Cloning
Transcription Factors

Multi-scale dynamics at the glassy silica surface

Nguyen, H. A., Liao, C., Wallum, A., Lyding, J. & Gruebele, M., Nov 7 2019, In : Journal of Chemical Physics. 151, 17, 174502.

Research output: Contribution to journalArticle

Silicon Dioxide
silicon dioxide
Glass
glass
Entropy

Multivalent Polymer-Peptide Conjugates: A General Platform for Inhibiting Amyloid Beta Peptide Aggregation

Jiang, X., Halmes, A. J., Licari, G., Smith, J. W., Song, Y., Moore, E. G., Chen, Q., Tajkhorshid, E., Rienstra, C. M. & Moore, J. S., Oct 15 2019, In : ACS Macro Letters. 8, 10, p. 1365-1371 7 p.

Research output: Contribution to journalArticle

Amyloid beta-Peptides
Peptides
Polymers
Agglomeration
Ligands

MyoTrack: Realtime Estimation of Subject Participation in Robotic Rehabilitation Using sEMG and IMU

Pareek, S., Manjunath, H., Esfahani, E. T. & Kesavadas, T., Jan 1 2019, In : IEEE Access. 7, p. 76030-76041 12 p., 8735854.

Research output: Contribution to journalArticle

Open Access
Electromyography
Patient rehabilitation
Robotics
Trajectories
Robots

MyoTrack: Tracking Subject Participation in Robotic Rehabilitation using sEMG and IMU

Pareek, S., Manjunath, H., Esfahani, E. T. & Kesavadas, T., May 8 2019, 2019 International Symposium on Medical Robotics, ISMR 2019. Institute of Electrical and Electronics Engineers Inc., 8710207. (2019 International Symposium on Medical Robotics, ISMR 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electromyography
Patient rehabilitation
Robotics
End effectors
Trajectories

Navigation graph for tiled media streaming

Park, J. & Nahrstedt, K., Oct 15 2019, MM 2019 - Proceedings of the 27th ACM International Conference on Multimedia. Association for Computing Machinery, Inc, p. 447-455 9 p. (MM 2019 - Proceedings of the 27th ACM International Conference on Multimedia).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Media streaming
Navigation
Video streaming
Augmented reality
Tile

Neck Circumference and Its Association with Cardiometabolic Risk Factors in Pediatric Population

González-Cortés, C. A., Teran-Garcia, M. D. L., Luevano-Contreras, C., Portales-Pérez, D. P., Vargas-Morales, J. M., Cubillas-Tejeda, A. C., Cossío-Torres, P. E. & Aradillas-García, C., May 21 2019, In : Medicina. 55, 5, 183.

Research output: Contribution to journalArticle

Open Access
Body Mass Index
Neck
Pediatrics
Waist Circumference
Population

Neuromuscular actuation of biohybrid motile bots

Aydin, O., Zhang, X., Nuethong, S., Pagan-Diaz, G. J., Bashir, R., Gazzola, M. & Saif, M. T. A., Oct 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19841-19847 7 p.

Research output: Contribution to journalArticle

Open Access
Muscles
Motor Neurons
Locomotion
Optogenetics
Neural Stem Cells

Neuropeptidomics of the mammalian brain

Xie, F., Anapindi, K. D. B., Romanova, E. V. & Sweedler, J. V., Jan 1 2019, Neuromethods. Humana Press Inc., p. 161-177 17 p. (Neuromethods; vol. 146).

Research output: Chapter in Book/Report/Conference proceedingChapter

Brain
Peptides
Mass spectrometry
Mass Spectrometry
Liquid chromatography

Noise-Induced Hearing Loss in 3 Working Dogs

Schneider, D. C., Foss, K. D., De Risio, L., Hague, D. W., Mitek, A. E. & McMichael, M., Dec 2019, In : Topics in Companion Animal Medicine. 37, 100362.

Research output: Contribution to journalArticle

Noise-Induced Hearing Loss
hearing
Dogs
Brain Stem Auditory Evoked Potentials
dogs

Nonparametric variable selection and its application to additive models

Feng, Z., Lin, L., Zhu, R. & Zhu, L., Jan 1 2019, In : Annals of the Institute of Statistical Mathematics.

Research output: Contribution to journalArticle

Additive Models
Variable Selection
Nonparametric Model
Approximation
Two-stage Procedure

Nonribosomal Peptide Extension by a Peptide Amino-Acyl tRNA Ligase

Zhang, Z. & Van Der Donk, W. A., Jan 1 2019, (Accepted/In press) In : Journal of the American Chemical Society.

Research output: Contribution to journalArticle

Amino Acyl-tRNA Synthetases
peptide
Peptides
Amino acids
RNA, Transfer, Cys

Nontranslational function of leucyl-tRNA synthetase regulates myogenic differentiation and skeletal muscle regeneration

Son, K., You, J. S., Yoon, M. S., Dai, C., Kim, J. H., Khanna, N., Banerjee, A., Martinis, S. A., Han, G., Han, J. M., Kim, S. & Chen, J., May 1 2019, In : Journal of Clinical Investigation. 129, 5, p. 2088-2093 6 p.

Research output: Contribution to journalArticle

Open Access
Amino Acyl-tRNA Synthetases
Regeneration
Skeletal Muscle
Muscle Development
Transfer RNA Aminoacylation

Novel semiconductor quantum devices shaping our century

Bayram, C., Apr 2019, In : IEEE Nanotechnology Magazine. 13, 2, 1 p., 8674658.

Research output: Contribution to journalEditorial

Semiconductor materials

Observation of Microheterogeneity in Highly Concentrated Nonaqueous Electrolyte Solutions

Robertson, L. A., Li, Z., Cao, Y., Shkrob, I. A., Tyagi, M., Smith, K. C., Zhang, L., Moore, J. S. & Z, Y., Jan 1 2019, In : Journal of the American Chemical Society.

Research output: Contribution to journalArticle

electrolyte
Electrolytes
Observation
Neutrons
Fluids

Off-policy evaluation and learning from logged bandit feedback: Error reduction via surrogate policy

Xie, Y., Liu, Q., Zhou, Y., Liu, B., Wang, Z. & Peng, J., Jan 1 2019.

Research output: Contribution to conferencePaper

Maximum likelihood
Feedback
evaluation
learning
Recommender systems

O-Methyltransferase-Mediated Incorporation of a β-Amino Acid in Lanthipeptides

Acedo, J. Z., Bothwell, I. R., An, L., Trouth, A., Frazier, C. & Van Der Donk, W. A., Jan 1 2019, In : Journal of the American Chemical Society. 141, 42, p. 16790-16801 12 p.

Research output: Contribution to journalArticle

Methyltransferases
Isoaspartic Acid
peptide
Peptides
Amino acids

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In : Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.

Research output: Contribution to journalArticle

Trigeminal Nuclei
Trigeminal Ganglion
Hyperalgesia
Nucleus Accumbens
Circadian Rhythm

Optical excitation and detection of neuronal activity

Hu, C., Sam, R., Shan, M., Nastasa, V., Wang, M., Kim, T., Gillette, M., Sengupta, P. & Popescu, G., Mar 2019, In : Journal of Biophotonics. 12, 3, e201800269.

Research output: Contribution to journalArticle

Optogenetics
Photoexcitation
stimulation
Electrophysiology
Imaging techniques

Optical measures of cerebral arterial stiffness are associated with white matter signal abnormalities and cognitive performance in normal aging

Tan, C. H., Low, K. A., Chiarelli, A. M., Fletcher, M. A., Navarra, R., Burzynska, A. Z., Kong, T. S., Zimmerman, B., Maclin, E. L., Sutton, B. P., Gratton, G. & Fabiani, M., Dec 2019, In : Neurobiology of Aging. 84, p. 200-207 8 p.

Research output: Contribution to journalArticle

Vascular Stiffness
Aptitude
Elasticity
Pulse
White Matter
hemangiosarcoma
Hemangiosarcoma
burden of disease
body cavities
Canidae

Oxygen-dependent regulation of SPI1 type three secretion system by small RNAs in Salmonella enterica serovar Typhimurium

Kim, K., Golubeva, Y. A., Vanderpool, C. & Slauch, J. M., Mar 2019, In : Molecular Microbiology. 111, 3, p. 570-587 18 p.

Research output: Contribution to journalArticle

Genomic Islands
Salmonella enterica
Salmonella
RNA
Oxygen

PACAP and other neuropeptide targets link chronic migraine and opioid-induced hyperalgesia in mouse models

Anapindi, K. D. B., Yang, N., Romanova, E. V., Rubakhin, S. S., Tipton, A., Dripps, I., Sheets, Z., Sweedler, J. V. & Pradhan, A. A., Jan 1 2019, In : Molecular and Cellular Proteomics. 18, 12, p. 2447-2458 12 p.

Research output: Contribution to journalArticle

Pituitary Adenylate Cyclase-Activating Polypeptide
Hyperalgesia
Neuropeptides
Migraine Disorders
Opioid Analgesics

Pasteurella multocida: Genotypes and genomics

Peng, Z., Wang, X., Zhou, R., Chen, H., Wilson, B. A. & Wu, B., Jan 1 2019, In : Microbiology and Molecular Biology Reviews. 83, 4, e00014-19.

Research output: Contribution to journalReview article

Pasteurella multocida
Genomics
Genotype
Genome
Virulence

Patient satisfaction with treatment outcomes after surgery and/or radiotherapy for spinal metastases

for the AOSpine Knowledge Forum Tumor, Dec 1 2019, In : Cancer. 125, 23, p. 4269-4277 9 p.

Research output: Contribution to journalArticle

Open Access
Patient Satisfaction
Radiotherapy
Neoplasm Metastasis
Quality of Life
Pain

Peculiar lifespan changes of periodic leg movements during sleep in restless legs syndrome

Ferri, R., DelRosso, L. M., Silvani, A., Cosentino, F. I. I., Picchietti, D. L., Mogavero, P., Manconi, M. & Bruni, O., Jan 1 2019, In : Journal of Sleep Research. e12896.

Research output: Contribution to journalArticle

Restless Legs Syndrome
Leg
Sleep
Periodicity
Polysomnography

Pericyte transplantation improves skeletal muscle recovery following hindlimb immobilization

Munroe, M., Dvoretskiy, S., Lopez, A., Leong, J., Dyle, M. C., Kong, H. J., Adams, C. M. & Boppart, M., Jun 1 2019, In : FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 33, 6, p. 7694-7706 13 p.

Research output: Contribution to journalArticle

Hindlimb Suspension
Pericytes
Muscle
Skeletal Muscle
Transplantation

Periodic Earned Income Tax Credit (EITC) Payment, Financial Stress and Wellbeing: A Longitudinal Study

Kramer, K., Andrade, F. C. D., Greenlee, A. J., Mendenhall, R., Bellisle, D. & Lemons Blanks, R., Sep 15 2019, In : Journal of Family and Economic Issues. 40, 3, p. 511-523 13 p.

Research output: Contribution to journalArticle

Income Tax
Longitudinal Studies
Aptitude
Food Supply
Emergencies

Pharmacogenomics-Driven Prediction of Antidepressant Treatment Outcomes: A Machine-Learning Approach With Multi-trial Replication

Athreya, A. P., Neavin, D., Carrillo-Roa, T., Skime, M., Biernacka, J., Frye, M. A., Rush, A. J., Wang, L., Binder, E. B., Iyer, R. K., Weinshilboum, R. M. & Bobo, W. V., Oct 1 2019, In : Clinical Pharmacology and Therapeutics. 106, 4, p. 855-865 11 p.

Research output: Contribution to journalArticle

Pharmacogenetics
Serotonin Uptake Inhibitors
Antidepressive Agents
Major Depressive Disorder
Citalopram

Phase Dependent Mechanosensitivity in Cardiomyocytes

Williams, B. J. & Saif, M. T. A., Mar 15 2019, In : Experimental Mechanics. 59, 3, p. 387-393 7 p.

Research output: Contribution to journalArticle

Substrates
Rats
Tissue
Ions

Phase II trial of eribulin in patients with metastatic hormone refractory prostate cancer: A trial of the ECOG-ACRIN Cancer Research Group (E5805)

Stein, M. N., Chen, Y. H., Carducci, M. A., Hudes, G. R., Lerma, P. M., Tan, W. W., Dalune, R., Rowland, K. M., Kuzel, T. M. & DiPaola, R. S., Apr 1 2019, In : American Journal of Clinical Oncology: Cancer Clinical Trials. 42, 4, p. 375-381 7 p.

Research output: Contribution to journalArticle

eribulin
Prostatic Neoplasms
Hormones
Drug Therapy
Research

Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression

Cai, D., Feliciano, D., Dong, P., Flores, E., Gruebele, M., Porat-Shliom, N., Sukenik, S., Liu, Z. & Lippincott-Schwartz, J., Dec 1 2019, In : Nature Cell Biology. 21, 12, p. 1578-1589 12 p.

Research output: Contribution to journalArticle

Genome
Gene Expression
Proteins
Transcriptional Activation
Chromatin

Phosphatidic acid induces conformational changes in Sec18 protomers that prevent SNARE priming

Starr, M. L., Sparks, R. P., Arango, A. S., Hurst, L. R., Zhao, Z., Lihan, M., Jenkins, J. L., Tajkhorshid, E. & Fratti, R. A., Jan 1 2019, In : Journal of Biological Chemistry. 294, 9, p. 3100-3116 17 p.

Research output: Contribution to journalArticle

SNARE Proteins
Phosphatidic Acids
Protein Subunits
Membranes
N-Ethylmaleimide-Sensitive Proteins

pH selectively regulates citric acid and lipid production in Yarrowia lipolytica W29 during nitrogen-limited growth on glucose

Zhang, S., Jagtap, S. S., Deewan, A. & Rao, C. V., Jan 20 2019, In : Journal of Biotechnology. 290, p. 10-15 6 p.

Research output: Contribution to journalArticle

Yarrowia
Citric acid
Citric Acid
Lipids
Glucose

Picoliter Droplet Generation for Fast Monitoring the Brain Chemistry with Scaled Silicon Nanodyalisis Probe

Zhang, Y., Esters, A., Bi, O. & Vlasov, Y., Jun 2019, 2019 20th International Conference on Solid-State Sensors, Actuators and Microsystems and Eurosensors XXXIII, TRANSDUCERS 2019 and EUROSENSORS XXXIII. Institute of Electrical and Electronics Engineers Inc., p. 209-212 4 p. 8808797. (2019 20th International Conference on Solid-State Sensors, Actuators and Microsystems and Eurosensors XXXIII, TRANSDUCERS 2019 and EUROSENSORS XXXIII).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Silicon
Droplet
Chemistry
brain
Brain

Pituitary Adenylate Cyclase-Activating Peptide (PACAP)-Glutamate Co-transmission Drives Circadian Phase-Advancing Responses to Intrinsically Photosensitive Retinal Ganglion Cell Projections by Suprachiasmatic Nucleus

Lindberg, P. T., Mitchell, J. W., Burgoon, P. W., Beaulé, C., Weihe, E., Schäfer, M. K. H., Eiden, L. E., Jiang, S. Z. & Gillette, M. U., Dec 6 2019, In : Frontiers in Neuroscience. 13, 1281.

Research output: Contribution to journalArticle

Open Access
Suprachiasmatic Nucleus
Retinal Ganglion Cells
Adenylyl Cyclases
Glutamic Acid
Peptides

Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints

Gomez, A., Sharma, A. K., Mallott, E. K., Petrzelkova, K. J., Jost Robinson, C. A., Yeoman, C. J., Carbonero, F., Pafco, B., Rothman, J. M., Ulanov, A., Vlckova, K., Amato, K. R., Schnorr, S. L., Dominy, N. J., Modry, D., Todd, A., Torralba, M., Nelson, K. E., Burns, M. B., Blekhman, R. & 8 others, Remis, M., Stumpf, R. M., Wilson, B. A., Gaskins, H. R., Garber, P. A., White, B. A., Leigh, S. R. & Mcmahon, K., Jul 31 2019, In : mSphere. 4, 4, 14 p.

Research output: Contribution to journalArticle

Open Access
Microbiota
Primates
Haplorhini
Cercopithecidae
Population

Point-of-use detection of ascorbic acid using a spectrometric smartphone-based system

Aguirre, M. Á., Long, K. D., Canals, A. & Cunningham, B. T., Jan 30 2019, In : Food chemistry. 272, p. 141-147 7 p.

Research output: Contribution to journalArticle

Smartphones
Ascorbic Acid
Methylene Blue
ascorbic acid
methylene blue

Polarisation signals: A new currency for communication

Marshall, N. J., Powell, S. B., Cronin, T. W., Caldwell, R. L., Johnsen, S., Gruev, V., Chiou, T. H. S., Roberts, N. W. & How, M. J., Feb 2019, In : Journal of Experimental Biology. 222, 3, jeb134213.

Research output: Contribution to journalReview article

polarized light
currency
animal communication
polarization
Communication

Polymeric "clickase" Accelerates the Copper Click Reaction of Small Molecules, Proteins, and Cells

Chen, J., Wang, J., Li, K., Wang, Y., Gruebele, M. H. W., Ferguson, A. L. & Zimmerman, S. C., Jun 19 2019, In : Journal of the American Chemical Society. 141, 24, p. 9693-9700 8 p.

Research output: Contribution to journalArticle

Copper
Alkynes
Azides
catalyst
copper

Potential significance of facet joint fusion or posteromedial fusion observed on CT imaging following attempted posterolateral or posterior interbody fusion

Kim, D. H., Hwang, R. W., Lee, G. H., Joshi, R., Baker, K. C., Arnold, P., Sasso, R., Park, D. & Fischgrund, J., Jan 1 2019, (Accepted/In press) In : Spine Journal.

Research output: Contribution to journalArticle

Zygapophyseal Joint
Tomography
Bone and Bones
Autografts
Back Pain