Research Output 1969 2020

2019

Integration of machine learning and pharmacogenomic biomarkers for predicting response to antidepressant treatment: Can computational intelligence be used to augment clinical assessments?

Athreya, A. P., Iyer, R., Wang, L., Weinshilboum, R. M. & Bobo, W. V., Jan 1 2019, In : Pharmacogenomics. 20, 14, p. 983-988 6 p.

Research output: Contribution to journalReview article

Open Access
Artificial Intelligence
Pharmacogenetics
Antidepressive Agents
Biomarkers
Machine Learning

Integration of physical infrastructure and social systems in communities’ reliability and resilience analysis

Guidotti, R., Gardoni, P. & Rosenheim, N., May 2019, In : Reliability Engineering and System Safety. 185, p. 476-492 17 p.

Research output: Contribution to journalArticle

Critical infrastructures
Relocation
Potable water
Recovery

Integrin signaling: Linking mechanical stimulation to skeletal muscle hypertrophy

Boppart, M. D. & Mahmassani, Z. S., Jan 1 2019, In : American Journal of Physiology - Cell Physiology. 317, 4, p. C629-C641

Research output: Contribution to journalArticle

Integrins
Hypertrophy
Skeletal Muscle
Costameres
Resistance Training

Interstitial magnetic thermotherapy dosimetry based on shear wave magnetomotive optical coherence elastography

Huang, P. C., Chaney, E. J., Iyer, R. R., Spillman, D. R., Odintsov, B., Sobh, N. A. & Boppart, S. A., Jan 1 2019, In : Biomedical Optics Express. 10, 2, p. 539-551 13 p.

Research output: Contribution to journalArticle

Elasticity Imaging Techniques
Induced Hyperthermia
S waves
dosimeters
interstitials

Intra-operative imaging of surgical margins of canine soft tissue sarcoma using optical coherence tomography

Selmic, L. E., Samuelson, J. P., Reagan, J. K., Mesa, K. J., Driskell, E., Li, J., Marjanovic, M. & Boppart, S. A., Mar 2019, In : Veterinary and comparative oncology. 17, 1, p. 80-88 9 p.

Research output: Contribution to journalArticle

tomography
Optical Coherence Tomography
sarcoma
Sarcoma
Canidae

Introducing First-Year Medical Students to Product Innovation and Entrepreneurship

Coiado, O. C. & Ahmad, K., Jan 1 2019, (Accepted/In press) In : Medical Science Educator.

Research output: Contribution to journalArticle

Entrepreneurship
first-year student
Medical Education
Medical Students
entrepreneurship

Introduction to the Sixth Global Summit on the Health Effects of Yogurt: Yogurt, More than the Sum of Its Parts

Donovan, S. M. & Goulet, O., Sep 1 2019, In : Advances in Nutrition. 10, 5, p. 913S-916S

Research output: Contribution to journalArticle

Open Access
Yogurt
food matrix
yogurt
dairy products
Food

Investigating brain d-serine: Advocacy for good practices

Mothet, J. P., Billard, J. M., Pollegioni, L., Coyle, J. T. & Sweedler, J. V., May 2019, In : Acta Physiologica. 226, 1, e13257.

Research output: Contribution to journalReview article

Serine
Amino Acids
Brain
Molecular Models
Practice Guidelines

Investigating Gains in Neurocognition in an Intervention Trial of Exercise (IGNITE): Protocol

Erickson, K. I., Grove, G. A., Burns, J. M., Hillman, C. H., Kramer, A. F., McAuley, E., Vidoni, E. D., Becker, J. T., Butters, M. A., Gray, K., Huang, H., Jakicic, J. M., Kamboh, M. I., Kang, C., Klunk, W. E., Lee, P., Marsland, A. L., Mettenburg, J., Rogers, R. J., Stillman, C. M. & 6 others, Sutton, B. P., Szabo-Reed, A., Verstynen, T. D., Watt, J. C., Weinstein, A. M. & Wollam, M. E., Oct 2019, In : Contemporary Clinical Trials. 85, 105832.

Research output: Contribution to journalArticle

Clinical Protocols
Health
Brain
Biomarkers
Exercise
Carrier transport
Heterojunctions
Capacitance
Capacitance measurement
Metals

Investigations into the Mechanism of Action of Sublancin

Wu, C., Biswas, S., Garcia De Gonzalo, C. V. & van der Donk, W. A., Mar 8 2019, In : ACS Infectious Diseases. 5, 3, p. 454-459 6 p.

Research output: Contribution to journalArticle

Glucose
Biological Products
DNA Replication
Cell Wall
Carbon

In vivo detection of endotracheal tube biofilms in intubated critical care patients using catheter-based optical coherence tomography

Dsouza, R., Spillman, D. R., Barkalifa, R., Monroy, G. L., Chaney, E. J., White, K. C. & Boppart, S. A., Jan 1 2019, (Accepted/In press) In : Journal of Biophotonics. e201800307.

Research output: Contribution to journalArticle

biofilms
Catheters
Optical tomography
Optical Coherence Tomography
Biofilms

Is Preoperative Duration of Symptoms a Significant Predictor of Functional Outcomes in Patients Undergoing Surgery for the Treatment of Degenerative Cervical Myelopathy?

Tetreault, L., Wilson, J. R., Kotter, M. R. N., Côté, P., Nouri, A., Kopjar, B., Arnold, P. M. & Fehlings, M. G., Nov 1 2019, In : Clinical Neurosurgery. 85, 5, p. 642-647 6 p.

Research output: Contribution to journalArticle

Spinal Cord Diseases
Orthopedics
Therapeutics
Neck
Quality of Life
Public relations
Public health
Health care
longitudinal study
Health

Is the Power List a Representative List?

Sweedler, J. V., Dec 3 2019, In : Analytical chemistry. 91, 23, 1 p.

Research output: Contribution to journalEditorial

Open Access

Jewels in the crown: Exploring the motivations and team building processes of employee entrepreneurs

Shah, S. K., Agarwal, R. & Echambadi, R., Jan 1 2019, In : Strategic Management Journal. 40, 9, p. 1417-1452 36 p.

Research output: Contribution to journalArticle

Work place
Entrepreneurs
Team building
Employees
Factors

Knowledge flow: Improve upon your teachers

Liu, I. J., Peng, J. & Schwing, A. G., Jan 1 2019.

Research output: Contribution to conferencePaper

Students
teacher
Tuning
knowledge
student

Label-free molecular profiling for identification of biomarkers in carcinogenesis using multimodal multiphoton imaging

Liu, Y., Tu, H., You, S., Chaney, E. J., Marjanovic, M. & Boppart, S. A., Jan 1 2019, In : Quantitative Imaging in Medicine and Surgery. 9, 5, p. 742-756 15 p.

Research output: Contribution to journalArticle

Multimodal Imaging
Carcinogenesis
Biomarkers
Neoplasms
Photons

Label-Free Pathogen Detection Based on Yttrium-Doped Carbon Nanoparticles up to Single-Cell Resolution

Alafeef, M., Dighe, K. & Pan, D., Nov 20 2019, In : ACS Applied Materials and Interfaces. 11, 46, p. 42943-42955 13 p.

Research output: Contribution to journalArticle

Yttrium
Pathogens
Labels
Carbon
Nanoparticles

Label-free visualization and characterization of extracellular vesicles in breast cancer

You, S., Barkalifa, R., Chaney, E. J., Tu, H., Park, J., Sorrells, J. E., Sun, Y., Liu, Y. Z., Yang, L., Chen, D. Z., Marjanovic, M., Sinha, S. & Boppart, S. A., Nov 26 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 48, p. 24012-24018 7 p.

Research output: Contribution to journalArticle

Breast Neoplasms
NAD
Neoplasms
Metabolome
Masks

Lack of muscle mTOR kinase activity causes early onset myopathy and compromises whole-body homeostasis

Zhang, Q., Duplany, A., Moncollin, V., Mouradian, S., Goillot, E., Mazelin, L., Gauthier, K., Streichenberger, N., Angleraux, C., Chen, J., Ding, S., Schaeffer, L. & Gangloff, Y. G., Feb 2019, In : Journal of Cachexia, Sarcopenia and Muscle. 10, 1, p. 35-53 19 p.

Research output: Contribution to journalArticle

Muscular Diseases
Sirolimus
Homeostasis
Phosphotransferases
Muscles

Larger omental adipocytes correlate with greater Fetuin-A reduction following sleeve gastrectomy

Robinson, K. N., Rowitz, B. M., Oliphant, U. J., Donovan, S. M. & Teran-Garcia, M. D. L., May 6 2019, In : BMC Obesity. 6, 1, 15.

Research output: Contribution to journalArticle

Open Access
alpha-2-HS-Glycoprotein
Gastrectomy
Adipocytes
Insulin Resistance
Ambulatory Surgical Procedures

Learning belief representations for imitation learning in POMDPs

Gangwani, T., Lehman, J., Liu, Q. & Peng, J., Jan 1 2019.

Research output: Contribution to conferencePaper

Recurrent neural networks
Reinforcement learning
Ablation
Learning algorithms
Demonstrations

Learning self-imitating diverse policies

Gangwani, T., Liu, Q. & Peng, J., Jan 1 2019.

Research output: Contribution to conferencePaper

reward
learning
divergence
imitation
Reinforcement learning

Learning to play in a day: Faster deep reinforcement learning by optimality tightening

He, F. S., Liu, Y., Schwing, A. G. & Peng, J., Jan 1 2019.

Research output: Contribution to conferencePaper

Reinforcement learning
reinforcement
Constrained optimization
learning
reward

Lentivirus-mediated RNAi in skeletal myogenesis

Kim, D., Reyes-Ordoñez, A. & Chen, J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 95-110 16 p. (Methods in Molecular Biology; vol. 1889).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lentivirus
Muscle Development
RNA Interference
Small Interfering RNA
Muscle Cells

Lipid Analysis of 30 000 Individual Rodent Cerebellar Cells Using High-Resolution Mass Spectrometry

Neumann, E. K., Ellis, J. F., Triplett, A. E., Rubakhin, S. & Sweedler, J. V., Jan 1 2019, In : Analytical chemistry.

Research output: Contribution to journalArticle

Mass spectrometry
Lipids
Cyclotron resonance
Rodentia
Ionization
Lipids
Neurons
Ionization
Mass spectrometry
Desorption

Localized Dielectric Loss Heating in Dielectrophoresis Devices

Kwak, T. J., Hossen, I., Bashir, R., Chang, W. J. & Lee, C. H., Dec 1 2019, In : Scientific reports. 9, 1, 18977.

Research output: Contribution to journalArticle

Open Access
Heating
Equipment and Supplies
Temperature
Electrodes
Hot Temperature

Local wavefront mapping in tissue using computational adaptive optics OCT

South, F. A., Liu, Y. Z., Huang, P. C., Kohlfarber, T. & Boppart, S. A., Mar 1 2019, In : Optics Letters. 44, 5, p. 1186-1189 4 p.

Research output: Contribution to journalArticle

adaptive optics
aberration
tomography
high resolution
defects

Locking Two Rigid-body Bundles in an Outward-Facing Conformation: The Ion-coupling Mechanism in a LeuT-fold Transporter

Li, J., Zhao, Z. & Tajkhorshid, E., Dec 1 2019, In : Scientific reports. 9, 1, 19479.

Research output: Contribution to journalArticle

Open Access
Molecular Dynamics Simulation
Ions
Binding Sites
Proteins

Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle

Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., Ko, E., Platt, M. O. & Bashir, R., Jul 1 2019, In : Tissue Engineering - Part A. 25, 13-14, p. 1023-1036 14 p.

Research output: Contribution to journalArticle

Cryopreservation
Muscle
Skeletal Muscle
Tissue
Freezing

Machine Learning-Assisted Array-Based Biomolecular Sensing Using Surface-Functionalized Carbon Dots

Pandit, S., Banerjee, T., Srivastava, I., Nie, S. & Pan, D., Jan 1 2019, In : ACS Sensors. 4, 10, p. 2730-2737 8 p.

Research output: Contribution to journalArticle

machine learning
Pattern recognition
Learning systems
Carbon
pattern recognition

Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction

Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M. D., Im, S. G., Bashir, R. & Kong, H., Mar 20 2019, In : Advanced Science. 6, 6, 1801521.

Research output: Contribution to journalArticle

Neuromuscular Junction
Skeletal Muscle Fibers
Synaptic Transmission
Topography
topography

Mechanical properties of 3D printed polymeric Gyroid cellular structures: Experimental and finite element study

Abueidda, D. W., Elhebeary, M., Shiang, C. S. A., Pang, S., Abu Al-Rub, R. K. & Jasiuk, I. M., Mar 5 2019, In : Materials and Design. 165, 107597.

Research output: Contribution to journalArticle

Finite element method
Mechanical properties
Energy absorption
Compressive strength
Printing

Mechanistic interpretation of non-coding variants for discovering transcriptional regulators of drug response

Xie, X., Hanson, C. & Sinha, S., Jul 30 2019, In : BMC biology. 17, 1, 62.

Research output: Contribution to journalArticle

Open Access
phenotype
drug
Transcription Factors
transcription factors
drugs

Mechanistic Studies of the Kinase Domains of Class IV Lanthipeptide Synthetases

Hegemann, J. D., Shi, L., Gross, M. L. & Van Der Donk, W. A., Jun 5 2019, In : ACS chemical biology. 14, 7, p. 1583-1592 10 p.

Research output: Contribution to journalArticle

Ligases
Phosphotransferases
Protein Sorting Signals
Proteins
Enzymes

Mechano-acoustic sensing of physiological processes and body motions via a soft wireless device placed at the suprasternal notch

Lee, K. H., Ni, X., Lee, J. Y., Arafa, H., Pe, D. J., Xu, S., Avila, R., Irie, M., Lee, J. H., Easterlin, R. L., Kim, D. H., Chung, H. U., Olabisi, O. O., Getaneh, S., Chung, E., Hill, M., Bell, J., Jang, H., Liu, C., Park, J. B. & 12 others, Kim, J., Kim, S. B., Mehta, S., Pharr, M., Tzavelis, A., Reeder, J. T., Huang, I., Deng, Y., Xie, Z., Davies, C. R., Huang, Y. & Rogers, J. A., Jan 1 2019, (Accepted/In press) In : Nature biomedical engineering.

Research output: Contribution to journalArticle

Physiological Phenomena
Deglutition
Vibration
Acoustics
Stethoscopes

Metagenomic binning through low-density hashing

Luo, Y., Yu, Y. W., Zeng, J., Berger, B. & Peng, J., Jan 15 2019, In : Bioinformatics. 35, 2, p. 219-226 8 p.

Research output: Contribution to journalArticle

Open Access
Metagenomics
Binning
Hashing
Bioinformatics
Computational Biology

Metal-independent variants of phosphoglycerate mutase promote resistance to nutritional immunity and retention of glycolysis during infection

Radin, J. N., Kelliher, J. L., Solórzano, P. K. P., Grim, K. P., Ramezanifard, R., Slauch, J. M. & Kehl-Fie, T. E., Jul 2019, In : PLoS pathogens. 15, 7, e1007971.

Research output: Contribution to journalArticle

Open Access
Phosphoglycerate Mutase
Glycolysis
Manganese
Immunity
Metals

Microcavity-Mediated Spectrally Tunable Amplification of Absorption in Plasmonic Nanoantennas

Huang, Q. & Cunningham, B. T., Aug 14 2019, In : Nano letters. 19, 8, p. 5297-5303 7 p.

Research output: Contribution to journalArticle

Microcavities
Amplification
photonics
Hybrid systems
Photonics

Microscopic Characterization of GRP1 PH Domain Interaction with Anionic Membranes

Pant, S. & Tajkhorshid, E., Jan 1 2019, (Accepted/In press) In : Journal of Computational Chemistry. 41, 6, p. 489-499 11 p.

Research output: Contribution to journalArticle

Homology
Membrane
Membranes
Interaction
Lipids

Mineralization in micropores of calcium phosphate scaffolds

Rustom, L. E., Poellmann, M. J. & Wagoner Johnson, A. J., Jan 1 2019, In : Acta Biomaterialia. 83, p. 435-455 21 p.

Research output: Contribution to journalArticle

Calcium phosphate
Scaffolds
Bone
Bone and Bones
Bone Development

MIRAS: Model-based reinforcement learning for microservice resource allocation over scientific workflows

Yang, Z., Nguyen, P., Jin, H. & Nahrstedt, K., Jul 2019, Proceedings - 2019 39th IEEE International Conference on Distributed Computing Systems, ICDCS 2019. Institute of Electrical and Electronics Engineers Inc., p. 122-132 11 p. 8885267. (Proceedings - International Conference on Distributed Computing Systems; vol. 2019-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Reinforcement learning
Resource allocation
Architectural design
Software design
Simulators

Modeling of Osteoprobe indentation on bone

Idkaidek, A. & Jasiuk, I. M., Feb 2019, In : Journal of the Mechanical Behavior of Biomedical Materials. 90, p. 365-373 9 p.

Research output: Contribution to journalArticle

Indentation
Bone
Yield stress
Elastic moduli
Viscosity

Modeling the climate change effects on storm surge with metamodels

Contento, A., Xu, H., Gardoni, P. & Guerrier, S., Jan 1 2019, Life-Cycle Analysis and Assessment in Civil Engineering: Towards an Integrated Vision - Proceedings of the 6th International Symposium on Life-Cycle Civil Engineering, IALCCE 2018. Frangopol, D. M., Caspeele, R. & Taerwe, L. (eds.). CRC Press/Balkema, p. 1719-1726 8 p. (Life-Cycle Analysis and Assessment in Civil Engineering: Towards an Integrated Vision - Proceedings of the 6th International Symposium on Life-Cycle Civil Engineering, IALCCE 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Climate change
Hurricanes
Risk analysis

Modeling the joint probability distribution of main shock and aftershock spectral accelerations

Hu, S., Tabandeh, A. & Gardoni, P., Jan 1 2019.

Research output: Contribution to conferencePaper

Joint Distribution
Risk Analysis
Probability distributions
Risk analysis
Shock

Modular Syntheses of Phenanthroindolizidine Natural Products

Jo, Y. I., Burke, M. D. & Cheon, C. H., Jun 7 2019, In : Organic Letters. 21, 11, p. 4201-4204 4 p.

Research output: Contribution to journalArticle

Boronic Acids
Vanadium
Biological Products
Bromides
Alkaloids

Modulating Noncovalent Cross-links with Molecular Switches

Epstein, E. S., Martinetti, L., Kollarigowda, R. H., Carey-De La Torre, O., Moore, J. S., Ewoldt, R. H. & Braun, P. V., Feb 27 2019, In : Journal of the American Chemical Society. 141, 8, p. 3597-3604 8 p.

Research output: Contribution to journalArticle

polymer
Metals
Switches
Metal ions
Polymers