Research Output

2019

Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer

Liu, W., Cui, Y., Ren, W. & Irudayaraj, J., Jan 30 2019, In : Clinical epigenetics. 11, 1, 16.

Research output: Contribution to journalArticle

Epigenetic loss of RNA-methyltransferase NSUN5 in glioma targets ribosomes to drive a stress adaptive translational program

Janin, M., Ortiz-Barahona, V., de Moura, M. C., Martínez-Cardús, A., Llinàs-Arias, P., Soler, M., Nachmani, D., Pelletier, J., Schumann, U., Calleja-Cervantes, M. E., Moran, S., Guil, S., Bueno-Costa, A., Piñeyro, D., Perez-Salvia, M., Rosselló-Tortella, M., Piqué, L., Bech-Serra, J. J., De La Torre, C., Vidal, A. & 36 others, Martínez-Iniesta, M., Martín-Tejera, J. F., Villanueva, A., Arias, A., Cuartas, I., Aransay, A. M., La Madrid, A. M., Carcaboso, A. M., Santa-Maria, V., Mora, J., Fernandez, A. F., Fraga, M. F., Aldecoa, I., Pedrosa, L., Graus, F., Vidal, N., Martínez-Soler, F., Tortosa, A., Carrato, C., Balañá, C., Boudreau, M. W., Hergenrother, P. J., Kötter, P., Entian, K. D., Hench, J., Frank, S., Mansouri, S., Zadeh, G., Dans, P. D., Orozco, M., Thomas, G., Blanco, S., Seoane, J., Preiss, T., Pandolfi, P. P. & Esteller, M., Dec 1 2019, In : Acta Neuropathologica. 138, 6, p. 1053-1074 22 p.

Research output: Contribution to journalArticle

Open Access

Epigenetic Remodeling through Downregulation of Polycomb Repressive Complex 2 Mediates Chemotherapy Resistance in Testicular Germ Cell Tumors

Singh, R., Fazal, Z., Corbet, A. K., Bikorimana, E., Rodriguez, J. C., Khan, E. M., Shahid, K., Spinella, S. J. & Spinella, M. J., Jun 8 2019, In : Cancers. 11, 6, 796.

Research output: Contribution to journalArticle

Open Access

Epi-illumination gradient light interference microscopy for imaging opaque structures

Kandel, M. E., Hu, C., Naseri Kouzehgarani, G., Min, E., Sullivan, K. M., Kong, H., Li, J. M., Robson, D. N., Gillette, M. U., Best-Popescu, C. & Popescu, G., Dec 1 2019, In : Nature communications. 10, 1, 4691.

Research output: Contribution to journalArticle

Open Access

EVALUATING THE CLINICAL AND PHYSIOLOGICAL EFFECTS OF LONG-TERM ULTRAVIOLET B RADIATION ON RABBITS (ORYCTOLAGUS CUNICULUS)

Watson, M. K., Mitchell, M. A., Stern, A. W., Labelle, A. L., Joslyn, S., Fan, T. M., Cavaretta, M., Kohles, M. & Marshall, K., Jan 2019, In : Journal of Exotic Pet Medicine. 28, p. 43-55 13 p.

Research output: Contribution to journalArticle

Event-driven stitching for tile-based live 360 video streaming

Chen, B., Yan, Z., Jin, H. & Nahrstedt, K., Jun 18 2019, Proceedings of the 10th ACM Multimedia Systems Conference, MMSys 2019. Association for Computing Machinery, Inc, p. 1-12 12 p. (Proceedings of the 10th ACM Multimedia Systems Conference, MMSys 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Evolutionary Stability of Salt Bridges Hints Its Contribution to Stability of Proteins

Ban, X., Lahiri, P., Dhoble, A. S., Li, D., Gu, Z., Li, C., Cheng, L., Hong, Y., Li, Z. & Bhalerao, K., 2019, In : Computational and Structural Biotechnology Journal. 17, p. 895-903 9 p.

Research output: Contribution to journalArticle

Open Access

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

Amato, K. R., G. Sanders, J., Song, S. J., Nute, M., Metcalf, J. L., Thompson, L. R., Morton, J. T., Amir, A., J. McKenzie, V., Humphrey, G., Gogul, G., Gaffney, J., L. Baden, A., A.O. Britton, G., P. Cuozzo, F., Di Fiore, A., J. Dominy, N., L. Goldberg, T., Gomez, A., Kowalewski, M. M. & 9 others, J. Lewis, R., Link, A., L. Sauther, M., Tecot, S., A. White, B., E. Nelson, K., M. Stumpf, R., Knight, R. & R. Leigh, S., Mar 1 2019, In : ISME Journal. 13, 3, p. 576-587 12 p.

Research output: Contribution to journalArticle

Exact distance measurements for structure and dynamics in solid proteins by fast-magic-angle-spinning NMR

Grohe, K., Nimerovsky, E., Singh, H., Vasa, S. K., Söldner, B., Vögeli, B., Rienstra, C. & Linser, R., Jan 1 2019, In : Chemical Communications. 55, 55, p. 7899-7902 4 p.

Research output: Contribution to journalArticle

Exercise and the Gut Microbiome: A Review of the Evidence, Potential Mechanisms, and Implications for Human Health

Mailing, L. J., Allen, J. M., Buford, T. W., Fields, C. J. & Woods, J. A., Apr 1 2019, In : Exercise and Sport Sciences Reviews. 47, 2, p. 75-85 11 p.

Research output: Contribution to journalReview article

Expanding the limits of the second genetic code with ribozymes

Lee, J., Schwieter, K. E., Watkins, A. M., Kim, D. S., Yu, H., Schwarz, K. J., Lim, J., Coronado, J., Byrom, M., Anslyn, E. V., Ellington, A. D., Moore, J. S. & Jewett, M. C., Dec 1 2019, In : Nature communications. 10, 1, 5097.

Research output: Contribution to journalArticle

Open Access

Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures

Neumann, E. K., Do, T. D., Comi, T. J. & Sweedler, J. V., Jul 8 2019, In : Angewandte Chemie - International Edition. 58, 28, p. 9348-9364 17 p.

Research output: Contribution to journalReview article

Exposure to di-(2-ethylhexyl) phthalate transgenerationally alters anxiety-like behavior and amygdala gene expression in adult male and female mice

Hatcher, K. M., Willing, J., Chiang, C., Rattan, S., Flaws, J. A. & Mahoney, M. M., Aug 1 2019, In : Physiology and Behavior. 207, p. 7-14 8 p.

Research output: Contribution to journalArticle

Extensive variability in the gut microbiome of a highly-specialized and critically endangered lemur species across sites

Donohue, M. E., Asangba, A. E., Ralainirina, J., Weisrock, D. W., Stumpf, R. M. & Wright, P. C., Oct 1 2019, In : American journal of primatology. 81, 10-11, e23046.

Research output: Contribution to journalArticle

Extracellular acidic pH inhibits acetate consumption by decreasing gene transcription of the tricarboxylic acid cycle and the glyoxylate shunt

Orr, J. S., Christensen, D. G., Wolfe, A. J. & Rao, C. V., Jan 1 2019, In : Journal of bacteriology. 201, 2, e00410-18.

Research output: Contribution to journalArticle

Feature extraction of video data for automatic visual tool tracking in robot assisted surgery

Huang, J., Li, X., Kesavadas, T. & Yang, L., Jul 26 2019, Proceedings of the 2019 4th International Conference on Robotics, Control and Automation, ICRCA 2019 - Workshop 2019 the 4th International Conference on Robotics and Machine Vision, ICRMV 2019. Association for Computing Machinery, p. 121-127 7 p. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

Berman, H. M., Adams, P. D., Bonvin, A. A., Burley, S. K., Carragher, B., Chiu, W., DiMaio, F., Ferrin, T. E., Gabanyi, M. J., Goddard, T. D., Griffin, P. R., Haas, J., Hanke, C. A., Hoch, J. C., Hummer, G., Kurisu, G., Lawson, C. L., Leitner, A., Markley, J. L., Meiler, J. & 18 others, Montelione, G. T., Phillips, G. N., Prisner, T., Rappsilber, J., Schriemer, D. C., Schwede, T., Seidel, C. A. M., Strutzenberg, T. S., Svergun, D. I., Tajkhorshid, E., Trewhella, J., Vallat, B., Velankar, S., Vuister, G. W., Webb, B., Westbrook, J. D., White, K. L. & Sali, A., Dec 3 2019, In : Structure. 27, 12, p. 1745-1759 15 p.

Research output: Contribution to journalArticle

Open Access

Feeding decision-making among first generation Latinas living in non-metropolitan and small metro areas

Pineros-Leano, M., Tabb, K., Liechty, J., Castañeda, Y. & Williams, M., Mar 2019, In : PloS one. 14, 3, e0213442.

Research output: Contribution to journalArticle

Open Access
Open Access

Firefighting Induces Acute Inflammatory Responses that are not Relieved by Aspirin in Older Firefighters

Smith, D. L., Friedman, N. M. G., Bloom, S. I., Armero, W. L., Pence, B. D., Cook, M. D., Fernhall, B., Horn, G. P. & Woods, J., Jul 1 2019, In : Journal of occupational and environmental medicine. 61, 7, p. 617-622 6 p.

Research output: Contribution to journalArticle

FIS: Facial Information Segmentation for Video Redaction

Chen, B. & Nahrstedt, K., Apr 22 2019, Proceedings - 2nd International Conference on Multimedia Information Processing and Retrieval, MIPR 2019. Institute of Electrical and Electronics Engineers Inc., p. 360-365 6 p. 8695409. (Proceedings - 2nd International Conference on Multimedia Information Processing and Retrieval, MIPR 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

From maternal tending to adolescent befriending: The adolescent transition of social support

Rodrigues, M. A., Sanford, S. R., Rogers, M. P., Lee, K. M. N., Wilson, M. A., Amos, J., Hunter, C. D. & Clancy, K. B. H., Jan 1 2019, (Accepted/In press) In : American journal of primatology. e23050.

Research output: Contribution to journalArticle

Frontal Ring-Opening Metathesis Copolymerization: Deviation of Front Velocity from Mixing Rules

Liu, H., Wei, H. & Moore, J. S., Jul 16 2019, In : ACS Macro Letters. 8, 7, p. 846-851 6 p.

Research output: Contribution to journalArticle

Fully Recyclable Metastable Polymers and Composites

Lloyd, E. M., Lopez Hernandez, H., Feinberg, A. M., Yourdkhani, M., Zen, E. K., Mejia, E. B., Sottos, N. R., Moore, J. S. & White, S. R., Jan 22 2019, In : Chemistry of Materials. 31, 2, p. 398-406 9 p.

Research output: Contribution to journalArticle

Functionalized and Degradable Polyphthalaldehyde Derivatives

Lutz, J. P., Davydovich, O., Hannigan, M. D., Moore, J. S., Zimmerman, P. M. & McNeil, A. J., Sep 18 2019, In : Journal of the American Chemical Society. 141, 37, p. 14544-14548 5 p.

Research output: Contribution to journalArticle

Gene-Edited Live Cell Sensor for Free Calcium

Sun, F., Lee, D. H., Gaj, T. & Cunningham, B. T., Oct 2019, 2019 IEEE Sensors, SENSORS 2019 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., 8956634. (Proceedings of IEEE Sensors; vol. 2019-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells

Roy, J., Dibaeinia, P., Fan, T. M., Sinha, S. & Das, A., Jan 1 2019, In : Journal of Lipid Research. 60, 2, p. 375-387 13 p.

Research output: Contribution to journalArticle

Global lysine acetylation in Escherichia coli results from growth conditions that favor acetate fermentation

Schilling, B., Basisty, N., Christensen, D. G., Sorensen, D., Orr, J. S., Wolfe, A. J. & Rao, C. V., May 1 2019, In : Journal of bacteriology. 201, 9, e00768-18.

Research output: Contribution to journalArticle

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Edwards, R. A., Vega, A. A., Norman, H. M., Ohaeri, M., Levi, K., Dinsdale, E. A., Cinek, O., Aziz, R. K., McNair, K., Barr, J. J., Bibby, K., Brouns, S. J. J., Cazares, A., de Jonge, P. A., Desnues, C., Díaz Muñoz, S. L., Fineran, P. C., Kurilshikov, A., Lavigne, R., Mazankova, K. & 97 others, McCarthy, D. T., Nobrega, F. L., Reyes Muñoz, A., Tapia, G., Trefault, N., Tyakht, A. V., Vinuesa, P., Wagemans, J., Zhernakova, A., Aarestrup, F. M., Ahmadov, G., Alassaf, A., Anton, J., Asangba, A., Billings, E. K., Cantu, V. A., Carlton, J. M., Cazares, D., Cho, G. S., Condeff, T., Cortés, P., Cranfield, M., Cuevas, D. A., De la Iglesia, R., Decewicz, P., Doane, M. P., Dominy, N. J., Dziewit, L., Elwasila, B. M., Eren, A. M., Franz, C., Fu, J., Garcia-Aljaro, C., Ghedin, E., Gulino, K. M., Haggerty, J. M., Head, S. R., Hendriksen, R. S., Hill, C., Hyöty, H., Ilina, E. N., Irwin, M. T., Jeffries, T. C., Jofre, J., Junge, R. E., Kelley, S. T., Khan Mirzaei, M., Kowalewski, M., Kumaresan, D., Leigh, S. R., Lipson, D., Lisitsyna, E. S., Llagostera, M., Maritz, J. M., Marr, L. C., McCann, A., Molshanski-Mor, S., Monteiro, S., Moreira-Grez, B., Morris, M., Mugisha, L., Muniesa, M., Neve, H., Nguyen, N. P., Nigro, O. D., Nilsson, A. S., O’Connell, T., Odeh, R., Oliver, A., Piuri, M., Prussin, A. J., Qimron, U., Quan, Z. X., Rainetova, P., Ramírez-Rojas, A., Raya, R., Reasor, K., Rice, G. A. O., Rossi, A., Santos, R., Shimashita, J., Stachler, E. N., Stene, L. C., Strain, R., Stumpf, R., Torres, P. J., Twaddle, A., Ugochi Ibekwe, M. A., Villagra, N., Wandro, S., White, B., Whiteley, A., Whiteson, K. L., Wijmenga, C., Zambrano, M. M., Zschach, H. & Dutilh, B. E., Oct 1 2019, In : Nature Microbiology. 4, 10, p. 1727-1736 10 p.

Research output: Contribution to journalArticle

Graphene oxide substrates with N-cadherin stimulates neuronal growth and intracellular transport

Qin, E. C., Kandel, M. E., Liamas, E., Shah, T. B., Kim, C., Kaufman, C. D., Zhang, Z. J., Popescu, G., Gillette, M. L., Leckband, D. E. & Kong, H. J., May 2019, In : Acta Biomaterialia. 90, p. 412-423 12 p.

Research output: Contribution to journalArticle

Growth effects on velopharyngeal anatomy from childhood to adulthood

Perry, J. L., Kollara, L., Sutton, B. P., Kuehn, D. P. & Fang, X., Mar 2019, In : Journal of Speech, Language, and Hearing Research. 62, 3, p. 682-692 11 p.

Research output: Contribution to journalArticle

Gut microbiome composition of wild western lowland gorillas is associated with individual age and sex factors

Pafčo, B., Sharma, A. K., Petrželková, K. J., Vlčková, K., Todd, A., Yeoman, C. J., Wilson, B. A., Stumpf, R., White, B. A., Nelson, K. E., Leigh, S. & Gomez, A., Jul 2019, In : American journal of physical anthropology. 169, 3, p. 575-585 11 p.

Research output: Contribution to journalArticle

Gut Microbiota and Cardiometabolic Risk Factors in Hemodialysis Patients: A Pilot Study

Biruete, A., Allen, J. M., Kistler, B. M., Jeong, J. H., Fitschen, P. J., Swanson, K. S. & Wilund, K. R., Apr 1 2019, In : Topics in Clinical Nutrition. 34, 2, p. 153-160 8 p.

Research output: Contribution to journalArticle

Head versus Heart: The Effect of Objective versus Feelings-Based Mental Imagery on New Product Creativity

Herd, K. B. & Mehta, R., Jun 1 2019, In : Journal of Consumer Research. 46, 1, p. 36-52

Research output: Contribution to journalArticle

Health benefits of yogurt among infants and toddlers aged 4 to 24 months: A systematic review

Donovan, S. M. & Rao, G., Jan 1 2019, In : Nutrition reviews. 77, 7, p. 478-486 9 p.

Research output: Contribution to journalReview article

Heat conduction in porcine muscle and blood: Experiments and time-fractional telegraph equation model

Madhukar, A., Park, Y., Kim, W., Sunaryanto, H. J., Berlin, R., Chamorro, L. P., Bentsman, J. & Ostoja-Starzewski, M., Nov 1 2019, In : Journal of the Royal Society Interface. 16, 160, 0726.

Research output: Contribution to journalArticle

Heat shock-induced chaperoning by Hsp70 is enabled in-cell

Guin, D., Gelman, H., Wang, Y. & Gruebele, M., Jan 1 2019, In : PloS one. 14, 9, e0222990.

Research output: Contribution to journalArticle

Open Access

HetespaceyWalk: A heterogeneous Spacey random walk for heterogeneous information network embedding

He, Y., Song, Y., Li, J., Ji, C., Peng, J. & Peng, H., Nov 3 2019, CIKM 2019 - Proceedings of the 28th ACM International Conference on Information and Knowledge Management. Association for Computing Machinery, p. 639-648 10 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

High-intensity focused ultrasound-induced mechanochemical transduction in synthetic elastomers

Kim, G., Lau, V. M., Halmes, A. J., Oelze, M. L., Moore, J. S. & Li, K. C., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10214-10222 9 p.

Research output: Contribution to journalArticle

Highly Efficient Single-Pot Scarless Golden Gate Assembly

Hamedirad, M., Weisberg, S., Chao, R., Lian, J. & Zhao, H., May 17 2019, In : ACS synthetic biology. 8, 5, p. 1047-1054 8 p.

Research output: Contribution to journalArticle

High-throughput stability screening of neoantigen/HLA complexes improves immunogenicity predictions

Blaha, D. T., Anderson, S. D., Yoakum, D. M., Hager, M. V., Zha, Y., Gajewski, T. F. & Kranz, D. M., Jan 2019, In : Cancer Immunology Research. 7, 1, p. 50-61 12 p.

Research output: Contribution to journalArticle

Honey bee neurogenomic responses to affiliative and agonistic social interactions

Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Corona, F., Cash-Ahmed, A. C., Seward, C. H., Chandrasekaran, S., Stubbs, L. J. & Robinson, G. E., Jan 2019, In : Genes, Brain and Behavior. 18, 1, e12509.

Research output: Contribution to journalArticle

Human Milk Proteins: Composition and Physiological Significance

Donovan, S. M., Jan 1 2019, In : Nestle Nutrition Institute Workshop Series. 90, p. 93-101 9 p.

Research output: Contribution to journalArticle

Human verbal memory encoding is hierarchically distributed in a continuous processing stream

Kucewicz, M. T., Saboo, K., Berry, B. M., Kremen, V., Miller, L. R., Khadjevand, F., Inman, C. S., Wanda, P., Sperling, M. R., Gorniak, R., Davis, K. A., Jobst, B. C., Lega, B., Sheth, S. A., Rizzuto, D. S., Iyer, R. K., Kahana, M. J. & Worrell, G. A., Jan 1 2019, In : eNeuro. 6, 1, e0214-18.2018.

Research output: Contribution to journalArticle

Open Access

Identification and characterization of a new sulfoacetaldehyde reductase from the human gut bacterium Bifidobacterium kashiwanohense

Zhou, Y., Wei, Y., Nanjaraj Urs, A. N., Lin, L., Xu, T., Hu, Y., Ang, E. L., Zhao, H., Yuchi, Z. & Zhang, Y., Jan 1 2019, In : Bioscience Reports. 39, 6, Y.

Research output: Contribution to journalArticle

Open Access

Identification and Characterization of Citrus Peel Uronic Acid Oxidase

Wei, Y., Tan, Y. L., Ang, E. L. & Zhao, H., Jan 1 2019, (Accepted/In press) In : ChemBioChem.

Research output: Contribution to journalArticle