Research Output

2020

Treatment of a Mouse Model of ALS by In Vivo Base Editing

Lim, C. K. W., Gapinske, M., Brooks, A. K., Woods, W. S., Powell, J. E., Zeballos C., M. A., Winter, J., Perez-Pinera, P. & Gaj, T., Jan 1 2020, (Accepted/In press) In : Molecular Therapy.

Research output: Contribution to journalArticle

Triggered Transience of Plastic Materials by a Single Electron Transfer Mechanism

Feinberg, A. M., Davydovich, O., Lloyd, E. M., Ivanoff, D. G., Shiang, B., Sottos, N. R. & Moore, J. S., Jan 1 2020, (Accepted/In press) In : ACS Central Science.

Research output: Contribution to journalArticle

Open Access

Two-photon microscope using a fiber-based approach for supercontinuum generation and light delivery to a small-footprint optical head

Zhao, Y., Maguluri, G., Daniel Ferguson, R., Tu, H., Paul, K., Boppart, S. A., Llano, D. A. & Iftimia, N., Feb 15 2020, In : Optics Letters. 45, 4, p. 909-912 4 p.

Research output: Contribution to journalArticle

Ultrafast magnetic resonance spectroscopic imaging using SPICE with learned subspaces

Lam, F., Li, Y., Guo, R., Clifford, B. & Liang, Z. P., Feb 1 2020, In : Magnetic Resonance in Medicine. 83, 2, p. 377-390 14 p.

Research output: Contribution to journalArticle

Ultrasensitive detection of nucleic acids using deformed graphene channel field effect biosensors

Hwang, M. T., Heiranian, M., Kim, Y., You, S., Leem, J., Taqieddin, A., Faramarzi, V., Jing, Y., Park, I., Van Der Zande, A. M., Nam, S., Aluru, N. R. & Bashir, R., Mar 24 2020, In : Nature communications. 11, 1, 1543.

Research output: Contribution to journalArticle

Open Access

Ultrasound localization microscopy of renal tumor xenografts in chicken embryo is correlated to hypoxia

Lowerison, M. R., Huang, C., Lucien, F., Chen, S. & Song, P., Dec 1 2020, In : Scientific reports. 10, 1, 2478.

Research output: Contribution to journalArticle

Open Access

Understanding and Modeling Metastasis Biology to Improve Therapeutic Strategies for Combating Osteosarcoma Progression

Fan, T. M., Roberts, R. D. & Lizardo, M. M., Jan 31 2020, In : Frontiers in Oncology. 10, 13.

Research output: Contribution to journalReview article

Open Access

Unleashing the power of energy storage: Engineering β-oxidation pathways for polyketide production

Wang, B. & Zhao, H., Mar 2020, In : Synthetic and Systems Biotechnology. 5, 1, p. 21-22 2 p.

Research output: Contribution to journalComment/debate

Open Access

Variation in mouse pelvic morphology maps to locations enriched in Sox9 Class II and Pitx1 regulatory features

Roseman, C. C., Capellini, T. D., Jagoda, E., Williams, S. A., Grabowski, M., O'Connor, C., Polk, J. D. & Cheverud, J. M., Mar 1 2020, In : Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 334, 2, p. 100-112 13 p.

Research output: Contribution to journalArticle

Venous Thromboprophylaxis in Spine Surgery

Alvarado, A. M., Porto, G. B. F., Wessell, J., Buchholz, A. L. & Arnold, P. M., Jan 1 2020, In : Global Spine Journal. 10, 1_suppl, p. 65S-70S

Research output: Contribution to journalArticle

Open Access

X-ray CT in Phase Contrast Enhancement Geometry of Alginate Microbeads in a Whole-Animal Model

Brown, J., Somo, S., Brooks, F., Komarov, S., Zhou, W., Anastasio, M. & Brey, E., Mar 1 2020, In : Annals of Biomedical Engineering. 48, 3, p. 1016-1024 9 p.

Research output: Contribution to journalArticle

2019

13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study

Jeon, S., Li, Q., Rubakhin, S. S., Sweedler, J. V., Smith, J. W., Neuringer, M., Kuchan, M. & Erdman, J. W., Jan 2019, In : Nutrition Research. 61, p. 102-108 7 p.

Research output: Contribution to journalArticle

3D Columnar Phase of Stacked Short DNA Organized by Coherent Membrane Undulations

Bouxsein, N. F., Leal, C., McAllister, C. S., Li, Y., Ewert, K. K., Samuel, C. E. & Safinya, C. R., Sep 10 2019, In : Langmuir. 35, 36, p. 11891-11901 11 p.

Research output: Contribution to journalArticle

A 27-band snapshot hyperspectral imaging system for label-free tumor detection during image-guided surgery

Blair, S., Garcia, M., Konopka, C., Dobrucki, L. & Gruev, V., Jan 1 2019, Label-Free Biomedical Imaging and Sensing, LBIS 2019. Shaked, N. T. & Hayden, O. (eds.). SPIE, 108900G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10890).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A bi-criteria multiple-choice secretary problem

Yu, G., Jacobson, S. H. & Kiyavash, N., Jun 3 2019, In : IISE Transactions. 51, 6, p. 577-588 12 p.

Research output: Contribution to journalArticle

Accelerating nonconvex learning via replica exchange Langevin diffusion

Chen, Y., Chen, J., Dong, J., Peng, J. & Wang, Z., Jan 1 2019.

Research output: Contribution to conferencePaper

A Chalcogen-Bonding Cascade Switch for Planarizable Push–Pull Probes

Macchione, M., Goujon, A., Strakova, K., Humeniuk, H. V., Licari, G., Tajkhorshid, E., Sakai, N. & Matile, S., Oct 28 2019, In : Angewandte Chemie - International Edition. 58, 44, p. 15752-15756 5 p.

Research output: Contribution to journalArticle

AcMC 2: Accelerated Markov Chain Monte Carlo for Probabilistic Models

Banerjee, S. S., Kalbarczyk, Z. T. & Iyer, R. K., Apr 4 2019, ASPLOS 2019 - 24th International Conference on Architectural Support for Programming Languages and Operating Systems. Association for Computing Machinery, p. 515-528 14 p. (International Conference on Architectural Support for Programming Languages and Operating Systems - ASPLOS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

A Community-Based Participatory Assessment of the Health Status and Obesity Risks in Children From Rural Farmworker Families in the Midwest

Muzaffar, H., Raffaelli, M., Teran-Garcia, M., Wiley, A., Gonzalez, M. & Hannon, B. A., Dec 1 2019, In : Hispanic Health Care International. 17, 4, p. 149-155 7 p.

Research output: Contribution to journalArticle

A comparison of glenohumeral joint kinematics and muscle activation during standard and geared manual wheelchair mobility

Slavens, B. A., Jahanian, O., Schnorenberg, A. J. & Hsiao-Wecksler, E. T., Aug 2019, In : Medical Engineering and Physics. 70, p. 1-8 8 p.

Research output: Contribution to journalArticle

A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data

Dinh, H. V., Suthers, P. F., Chan, S. H. J., Shen, Y., Xiao, T., Deewan, A., Jagtap, S. S., Zhao, H., Rao, C. V., Rabinowitz, J. D. & Maranas, C. D., Dec 2019, In : Metabolic Engineering Communications. 9, e00101.

Research output: Contribution to journalArticle

Open Access

A Computationally Efficient Model for Predicting Successful Memory Encoding Using Machine-Learning-based EEG Channel Selection

Saboo, K. V., Varatharajah, Y., Berry, B. M., Sperling, M. R., Gorniak, R., Davis, K. A., Jobst, B. C., Gross, R. E., Lega, B., Sheth, S. A., Kahana, M. J., Kucewicz, M. T., Worrell, G. A. & Iyer, R. K., May 16 2019, 9th International IEEE EMBS Conference on Neural Engineering, NER 2019. IEEE Computer Society, p. 323-327 5 p. 8717057. (International IEEE/EMBS Conference on Neural Engineering, NER; vol. 2019-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A connected cytoskeleton network generates axonal tension in embryonic: Drosophila

Fan, A., Joy, M. S. H. & Saif, T., Jan 1 2019, In : Lab on a chip. 19, 18, p. 3133-3139 7 p.

Research output: Contribution to journalArticle

A continuing career in biocatalysis: Frances H. Arnold

Fasan, R., Jennifer Kan, S. B. & Zhao, H., Nov 1 2019, In : ACS Catalysis. 9, 11, p. 9775-9788 14 p.

Research output: Contribution to journalArticle

Activate capture and digital counting (AC + DC) assay for protein biomarker detection integrated with a self-powered microfluidic cartridge

Che, C., Li, N., Long, K. D., Aguirre, M. Á., Canady, T. D., Huang, Q., Demirci, U. & Cunningham, B. T., Jan 1 2019, In : Lab on a chip. 19, 23, p. 3943-3953 11 p.

Research output: Contribution to journalArticle

Activation of silent biosynthetic gene clusters using transcription factor decoys

Wang, B., Guo, F., Dong, S. H. & Zhao, H., Feb 1 2019, In : Nature chemical biology. 15, 2, p. 111-114 4 p.

Research output: Contribution to journalArticle

Acute aerobic exercise effects on cognitive function in breast cancer survivors: A randomized crossover trial

Salerno, E. A., Rowland, K., Kramer, A. F. & McAuley, E., Apr 23 2019, In : BMC Cancer. 19, 1, 371.

Research output: Contribution to journalArticle

Open Access

Addressing myths about exercise in hemodialysis patients

Wilund, K. R., Jeong, J. H. & Greenwood, S. A., Jul 1 2019, In : Seminars in Dialysis. 32, 4, p. 297-302 6 p.

Research output: Contribution to journalArticle

Adolescent impulsivity as a sex-dependent and subtype-dependent predictor of impulsivity, alcohol drinking and dopamine D 2 receptor expression in adult rats

Hammerslag, L. R., Belagodu, A. P., Aladesuyi Arogundade, O. A., Karountzos, A. G., Guo, Q., Galvez, R., Roberts, B. W. & Gulley, J. M., Mar 2019, In : Addiction Biology. 24, 2, p. 193-205 13 p.

Research output: Contribution to journalArticle

Advances in Pulsed Doppler Methods for Peripheral Perfusion Imaging

Insana, M. F., Zhu, Y., Kim, M. W. & Dobrucki, L. W., Oct 2019, 2019 IEEE International Ultrasonics Symposium, IUS 2019. IEEE Computer Society, p. 1164-1168 5 p. 8925694. (IEEE International Ultrasonics Symposium, IUS; vol. 2019-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Advancing the Fields of Measurement Science with Partnerships and Awards

Sweedler, J. V., Apr 2 2019, In : Analytical chemistry. 91, 7, 1 p.

Research output: Contribution to journalEditorial

A gene cluster for taurine sulfur assimilation in an anaerobic human gut bacterium

Xing, M., Wei, Y., Hua, G., Li, M., Nanjaraj Urs, A. N., Wang, F., Hu, Y., Zhai, W., Liu, Y., Ang, E. L., Zhao, H. & Zhang, Y., Aug 15 2019, In : Biochemical Journal. 476, 15, p. 2271-2279 9 p.

Research output: Contribution to journalArticle

Aging and Central Auditory Disinhibition: Is It a Reflection of Homeostatic Downregulation or Metabolic Vulnerability?

Ibrahim, B. A. & Llano, D. A., Dec 1 2019, In : Brain Sciences. 9, 12, 351.

Research output: Contribution to journalArticle

Open Access

A ground-up approach to estimate the likelihood of business interruption

Nocera, F. & Gardoni, P., Dec 2019, In : International Journal of Disaster Risk Reduction. 41, 101314.

Research output: Contribution to journalArticle

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access

AirwayVR: Virtual reality trainer for endotracheal intubation

Rajeswarari, P., Varqhese, J., Kesavadas, T., Kumar, P. & Vozenilek, J., Mar 2019, 26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1345-1346 2 p. 8797998. (26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

AirwayVR: Virtual reality trainer for endotracheal intubation-design considerations and challenges

Rajeswaran, P., Kesavadas, T., Jani, P. & Kumar, P., Mar 2019, 26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1130-1131 2 p. 8798249. (26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Allosteric Interactions in Human Cytochrome P450 CYP3A4: The Role of Phenylalanine 213

Denisov, I. G., Grinkova, Y. V., Nandigrami, P., Shekhar, M., Tajkhorshid, E. & Sligar, S. G., Mar 12 2019, In : Biochemistry. 58, 10, p. 1411-1422 12 p.

Research output: Contribution to journalArticle

A load-transfer function for the side resistance of drilled shafts in soft rock

Asem, P. & Gardoni, P., Jan 1 2019, In : Soils and Foundations.

Research output: Contribution to journalArticle

An algorithm for enhancing spatiotemporal resolution of probabilistic risk assessment to address emergent safety concerns in nuclear power plants

Bui, H., Sakurahara, T., Pence, J., Reihani, S., Kee, E. & Mohaghegh, Z., May 2019, In : Reliability Engineering and System Safety. 185, p. 405-428 24 p.

Research output: Contribution to journalArticle

Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador

Zurita, M. F., Cárdenas, P. A., Sandoval, M. E., Peña, M. C., Fornasini, M., Flores, N., Monaco, M. H., Berding, K., Donovan, S. M., Kuntz, T., Gilbert, J. A. & Baldeón, M. E., Jan 1 2019, (Accepted/In press) In : Gut Microbes.

Research output: Contribution to journalArticle

Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer

Woodburn, E. V., Long, K. D. & Cunningham, B. T., Jan 15 2019, In : IEEE Sensors Journal. 19, 2, p. 508-514 7 p., 8494768.

Research output: Contribution to journalArticle

An application of the theory of normative social behavior to bystander intervention for sexual assault

Reynolds-Tylus, T., Lukacena, K. M. & Quick, B. L., Aug 18 2019, In : Journal of American College Health. 67, 6, p. 551-559 9 p.

Research output: Contribution to journalArticle

Androgen Mediation—and Antiandrogens Mitigation—of the Epidermal Growth Factor Receptor (EGFR) Inhibitor–Induced Rash: Results From a Pilot Randomized Trial and Small Translational Case Series

Le-Rademacher, J. G., Rowland, K. M., Atherton, P. J., Dakhil, C., Sun, Z., Tan, A., Schmidt, L., Nguyen, P. L., Radecki Breitkopf, C., Pittelkow, M., Tindall, D., Menon, S. & Jatoi, A., Jun 1 2019, In : American Journal of Hospice and Palliative Medicine. 36, 6, p. 519-525 7 p.

Research output: Contribution to journalArticle

An efficient gene knock-in strategy using 5′-modified double-stranded DNA donors with short homology arms

Yu, Y., Guo, Y., Tian, Q., Lan, Y., Yeh, H., Zhang, M., Tasan, I., Jain, S. & Zhao, H., Dec 23 2019, (Accepted/In press) In : Nature chemical biology.

Research output: Contribution to journalArticle

A network of phosphatidylinositol 4,5-bisphosphate binding sites regulates gating of the Ca2+-activated Cl channel ANO1 (TMEM16A)

Yu, K., Jiang, T., Cui, Y. Y., Tajkhorshid, E. & Criss Hartzell, H., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19952-19962 11 p.

Research output: Contribution to journalArticle

Open Access